Wall clock time and date at job start Tue Mar 31 2020 21:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47249 * 2 1 4 4 H 1.09002 * 109.46619 * 305.69404 * 3 2 1 5 5 C 1.50703 * 109.47275 * 185.69981 * 3 2 1 6 6 H 1.08001 * 119.99680 * 245.44219 * 5 3 2 7 7 C 1.37877 * 120.00073 * 65.43943 * 5 3 2 8 8 N 1.31517 * 119.99867 * 356.38354 * 7 5 3 9 9 Si 1.86801 * 119.99907 * 176.38577 * 7 5 3 10 10 H 1.48495 * 109.47266 * 94.99603 * 9 7 5 11 11 H 1.48506 * 109.46771 * 214.99643 * 9 7 5 12 12 H 1.48497 * 109.46961 * 334.99233 * 9 7 5 13 13 N 1.46497 * 109.46879 * 65.69718 * 3 2 1 14 14 C 1.34775 * 119.99896 * 274.99754 * 13 3 2 15 15 O 1.21358 * 120.00054 * 0.02562 * 14 13 3 16 16 C 1.49346 * 119.99979 * 180.02562 * 14 13 3 17 17 O 1.21378 * 119.99993 * 0.02562 * 16 14 13 18 18 N 1.34778 * 119.99972 * 180.27572 * 16 14 13 19 19 C 1.39840 * 119.99777 * 174.59745 * 18 16 14 20 20 C 1.39111 * 119.96567 * 146.57435 * 19 18 16 21 21 C 1.38093 * 120.27998 * 180.02562 * 20 19 18 22 22 C 1.38341 * 120.20515 * 359.97438 * 21 20 19 23 23 F 1.35099 * 120.03632 * 180.02562 * 22 21 20 24 24 C 1.39887 * 119.92880 * 0.02562 * 22 21 20 25 25 C 1.47578 * 120.14036 * 180.02562 * 24 22 21 26 26 O 1.21488 * 119.99420 * 359.97438 * 25 24 22 27 27 O 1.34718 * 120.00097 * 179.97438 * 25 24 22 28 28 C 1.38532 * 119.96659 * 326.29874 * 19 18 16 29 29 H 1.09004 * 109.46856 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47142 * 299.99683 * 1 2 3 31 31 H 1.08997 * 109.47482 * 60.00426 * 1 2 3 32 32 H 1.09005 * 109.47538 * 239.99523 * 2 1 3 33 33 H 1.09010 * 109.47338 * 119.99797 * 2 1 3 34 34 H 0.97005 * 119.99537 * 179.97438 * 8 7 5 35 35 H 0.96999 * 120.00158 * 95.00616 * 13 3 2 36 36 H 0.97000 * 119.99722 * 354.60600 * 18 16 14 37 37 H 1.08003 * 119.85998 * 0.02562 * 20 19 18 38 38 H 1.07994 * 119.89705 * 180.02562 * 21 20 19 39 39 H 0.96705 * 116.99996 * 179.97438 * 27 25 24 40 40 H 1.07996 * 120.10382 * 0.02562 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5958 1.9849 -0.8346 5 6 3.5404 1.4449 -0.1411 6 1 4.1582 1.8061 0.6677 7 6 4.1243 0.9859 -1.3027 8 7 3.3766 0.4801 -2.2592 9 14 5.9774 1.0823 -1.5179 10 1 6.5900 -0.2100 -1.1184 11 1 6.2965 1.3625 -2.9410 12 1 6.5186 2.1712 -0.6656 13 7 1.6668 2.0924 1.2588 14 6 0.4510 2.6588 1.3902 15 8 -0.3349 2.6301 0.4658 16 6 0.0707 3.3218 2.6733 17 8 0.8569 3.3509 3.5976 18 7 -1.1472 3.8834 2.8065 19 6 -1.5458 4.4038 4.0418 20 6 -2.3739 5.5205 4.0908 21 6 -2.7710 6.0401 5.3070 22 6 -2.3482 5.4529 6.4861 23 9 -2.7392 5.9638 7.6741 24 6 -1.5153 4.3297 6.4470 25 6 -1.0619 3.6993 7.7020 26 8 -1.4116 4.1562 8.7720 27 8 -0.2603 2.6174 7.6610 28 6 -1.1202 3.8033 5.2154 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8901 34 1 3.7875 0.1576 -3.0766 35 1 2.2948 2.1151 1.9977 36 1 -1.7473 3.9264 2.0456 37 1 -2.7077 5.9830 3.1736 38 1 -3.4143 6.9069 5.3378 39 1 0.0109 2.2396 8.5089 40 1 -0.4806 2.9339 5.1781 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595030243.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:48 Heat of formation + Delta-G solvation = -197.849873 kcal Electronic energy + Delta-G solvation = -28612.503176 eV Core-core repulsion = 24113.146488 eV Total energy + Delta-G solvation = -4499.356689 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.116 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.05737 -42.21674 -41.33259 -40.35888 -39.13120 -37.22152 -37.16676 -35.93756 -34.29224 -32.85993 -32.76575 -30.70251 -29.13328 -26.36853 -26.10951 -24.88746 -23.89968 -22.50244 -21.75128 -21.20959 -20.27278 -19.28048 -18.97962 -18.62727 -18.18694 -17.63307 -17.40407 -17.16890 -17.09372 -16.78730 -16.63017 -16.32587 -15.94569 -15.63863 -15.19900 -15.02823 -14.60752 -14.53272 -14.34002 -14.02775 -13.85750 -13.67941 -13.48072 -13.17504 -12.99718 -12.88149 -12.71303 -12.68446 -12.54870 -12.14485 -12.10992 -11.88989 -11.59716 -11.51992 -11.07672 -10.66756 -10.56657 -10.39038 -9.81307 -9.35604 -8.18923 -6.34314 -0.68900 -0.20340 0.44724 1.23164 1.33345 1.45277 1.47637 1.57471 1.87319 2.13025 2.39816 2.45258 2.70790 2.97206 3.12521 3.43259 3.55177 3.74287 3.88498 4.12327 4.24998 4.50528 4.57261 4.59947 4.73009 4.78443 4.88585 4.95599 5.04162 5.06072 5.24428 5.37359 5.41501 5.41973 5.55872 5.57860 5.68925 5.79037 5.95314 6.09834 6.52699 6.69612 6.78799 6.82822 7.12489 7.37681 8.87266 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.018903 B = 0.002467 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.915019 B =11347.149143 C =11877.037705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.121 4.121 3 C 0.277 3.723 4 H 0.019 0.981 5 C -0.552 4.552 6 H 0.068 0.932 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.965 3.035 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.267 1.267 13 N -0.671 5.671 14 C 0.496 3.504 15 O -0.543 6.543 16 C 0.517 3.483 17 O -0.516 6.516 18 N -0.631 5.631 19 C 0.114 3.886 20 C -0.052 4.052 21 C -0.127 4.127 22 C 0.135 3.865 23 F -0.128 7.128 24 C -0.165 4.165 25 C 0.531 3.469 26 O -0.535 6.535 27 O -0.502 6.502 28 C -0.046 4.046 29 H 0.048 0.952 30 H 0.043 0.957 31 H 0.036 0.964 32 H 0.070 0.930 33 H 0.041 0.959 34 H 0.266 0.734 35 H 0.408 0.592 36 H 0.437 0.563 37 H 0.188 0.812 38 H 0.189 0.811 39 H 0.435 0.565 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.652 8.483 13.763 20.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.160 4.160 3 C 0.174 3.826 4 H 0.037 0.963 5 C -0.591 4.591 6 H 0.086 0.914 7 C -0.179 4.179 8 N -0.548 5.548 9 Si 0.790 3.210 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.191 1.191 13 N -0.321 5.321 14 C 0.276 3.724 15 O -0.422 6.422 16 C 0.300 3.700 17 O -0.391 6.391 18 N -0.280 5.280 19 C 0.020 3.980 20 C -0.071 4.071 21 C -0.146 4.146 22 C 0.115 3.885 23 F -0.106 7.106 24 C -0.168 4.168 25 C 0.376 3.624 26 O -0.427 6.427 27 O -0.316 6.316 28 C -0.067 4.067 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.244 0.756 36 H 0.279 0.721 37 H 0.205 0.795 38 H 0.206 0.794 39 H 0.298 0.702 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -12.803 8.629 13.472 20.490 hybrid contribution 1.281 -0.466 0.489 1.448 sum -11.522 8.162 13.960 19.856 Atomic orbital electron populations 1.21715 0.96365 0.99733 1.00607 1.21801 0.94345 0.98565 1.01249 1.18633 0.94087 0.89603 0.80243 0.96268 1.21524 0.91388 1.43968 1.02173 0.91369 1.25653 1.02845 0.94133 0.95242 1.70037 1.37068 1.40339 1.07314 0.85435 0.79576 0.78625 0.77346 1.20002 1.21000 1.19144 1.46248 1.14267 1.53235 1.18304 1.19933 0.83709 0.80910 0.87861 1.90746 1.50602 1.59750 1.41066 1.20360 0.82398 0.79013 0.88270 1.90780 1.50523 1.56562 1.41218 1.43015 1.16091 1.56620 1.12238 1.17803 1.00095 0.95702 0.84448 1.21475 0.94490 0.90923 1.00247 1.21296 1.02376 1.02483 0.88424 1.17996 0.95564 0.92554 0.82410 1.91571 1.88565 1.85635 1.44804 1.18986 1.06056 0.99820 0.91899 1.20643 0.75176 0.78079 0.88522 1.90930 1.55982 1.63517 1.32288 1.84567 1.61608 1.42253 1.43215 1.21277 0.97018 0.98918 0.89465 0.93336 0.93750 0.94479 0.91156 0.94000 0.92431 0.75630 0.72148 0.79481 0.79422 0.70221 0.83751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.07 8.53 71.98 0.61 -4.46 16 2 C -0.12 -5.49 5.49 30.59 0.17 -5.32 16 3 C 0.28 13.18 2.17 44.25 0.10 13.28 16 4 H 0.02 1.07 7.58 -2.39 -0.02 1.05 16 5 C -0.55 -28.06 8.67 25.60 0.22 -27.84 16 6 H 0.07 3.33 7.72 -2.91 -0.02 3.31 16 7 C 0.02 1.15 5.34 84.65 0.45 1.60 16 8 N -0.91 -49.50 11.57 21.45 0.25 -49.25 16 9 Si 0.97 40.91 29.54 68.60 2.03 42.94 16 10 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 11 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 12 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 13 N -0.67 -26.43 5.02 -447.53 -2.25 -28.68 16 14 C 0.50 17.44 6.49 87.24 0.57 18.01 16 15 O -0.54 -20.78 13.62 -3.27 -0.04 -20.82 16 16 C 0.52 14.72 7.62 87.24 0.66 15.38 16 17 O -0.52 -16.37 14.17 -3.33 -0.05 -16.42 16 18 N -0.63 -12.84 5.33 -304.91 -1.62 -14.47 16 19 C 0.11 2.06 6.27 38.14 0.24 2.30 16 20 C -0.05 -0.56 9.95 22.45 0.22 -0.33 16 21 C -0.13 -1.44 10.00 22.26 0.22 -1.22 16 22 C 0.14 2.61 7.28 22.69 0.17 2.77 16 23 F -0.13 -2.95 15.54 44.97 0.70 -2.25 16 24 C -0.16 -3.67 5.88 -20.07 -0.12 -3.79 16 25 C 0.53 12.74 8.27 70.29 0.58 13.33 16 26 O -0.54 -15.51 16.12 19.88 0.32 -15.19 16 27 O -0.50 -9.50 12.68 -56.27 -0.71 -10.21 16 28 C -0.05 -1.02 8.22 22.68 0.19 -0.84 16 29 H 0.05 1.70 8.14 -2.38 -0.02 1.69 16 30 H 0.04 1.67 5.63 -2.39 -0.01 1.66 16 31 H 0.04 1.57 7.89 -2.39 -0.02 1.55 16 32 H 0.07 3.60 6.27 -2.38 -0.01 3.59 16 33 H 0.04 1.81 8.14 -2.38 -0.02 1.80 16 34 H 0.27 13.77 8.31 -92.70 -0.77 13.00 16 35 H 0.41 15.04 8.00 -92.71 -0.74 14.30 16 36 H 0.44 7.08 8.30 -92.71 -0.77 6.31 16 37 H 0.19 0.62 8.06 -2.91 -0.02 0.60 16 38 H 0.19 0.83 8.06 -2.91 -0.02 0.81 16 39 H 0.44 3.95 9.11 -74.05 -0.67 3.28 16 40 H 0.14 3.69 5.98 -2.91 -0.02 3.67 16 Total: -1.00 -68.98 352.23 1.87 -67.11 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: -1.03 Total: 24.38 kcal Atomic # 6 Polarization: 18.59 SS G_CDS: 4.28 Total: 22.87 kcal Atomic # 7 Polarization: -88.78 SS G_CDS: -3.62 Total: -92.40 kcal Atomic # 8 Polarization: -62.16 SS G_CDS: -0.48 Total: -62.65 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.70 Total: -2.25 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Total: -68.98 1.87 -67.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030243.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.744 kcal (2) G-P(sol) polarization free energy of solvation -68.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds