Wall clock time and date at job start Tue Mar 31 2020 21:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47144 * 2 1 4 4 H 1.09007 * 109.47106 * 56.56890 * 3 2 1 5 5 C 1.50699 * 109.47216 * 176.56723 * 3 2 1 6 6 H 1.08002 * 119.99564 * 114.62740 * 5 3 2 7 7 C 1.37875 * 120.00281 * 294.62919 * 5 3 2 8 8 N 1.31508 * 119.99932 * 160.53695 * 7 5 3 9 9 Si 1.86800 * 120.00043 * 340.54421 * 7 5 3 10 10 H 1.48497 * 109.47069 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.46758 * 299.99336 * 9 7 5 12 12 H 1.48496 * 109.47445 * 59.99472 * 9 7 5 13 13 N 1.46494 * 109.46901 * 296.57367 * 3 2 1 14 14 C 1.34776 * 120.00298 * 85.00177 * 13 3 2 15 15 O 1.21366 * 120.00085 * 359.97438 * 14 13 3 16 16 C 1.49350 * 120.00078 * 179.97438 * 14 13 3 17 17 O 1.21380 * 119.99986 * 0.02562 * 16 14 13 18 18 N 1.34767 * 119.99860 * 179.97438 * 16 14 13 19 19 C 1.39847 * 119.99919 * 184.40235 * 18 16 14 20 20 C 1.39112 * 119.96196 * 141.45260 * 19 18 16 21 21 C 1.38098 * 120.27463 * 179.97438 * 20 19 18 22 22 C 1.38343 * 120.20598 * 0.04269 * 21 20 19 23 23 F 1.35097 * 120.03665 * 179.97438 * 22 21 20 24 24 C 1.39885 * 119.92781 * 359.97438 * 22 21 20 25 25 C 1.47583 * 120.13774 * 180.02562 * 24 22 21 26 26 O 1.21491 * 119.99837 * 359.97438 * 25 24 22 27 27 O 1.34725 * 120.00026 * 179.97438 * 25 24 22 28 28 C 1.38531 * 119.96538 * 321.18265 * 19 18 16 29 29 H 1.09002 * 109.47255 * 300.00097 * 1 2 3 30 30 H 1.09002 * 109.47308 * 59.99811 * 1 2 3 31 31 H 1.08997 * 109.47125 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47218 * 240.00097 * 2 1 3 33 33 H 1.09002 * 109.47098 * 119.99677 * 2 1 3 34 34 H 0.97004 * 120.00257 * 354.92743 * 8 7 5 35 35 H 0.96999 * 119.99676 * 264.99482 * 13 3 2 36 36 H 0.96994 * 120.00537 * 4.41167 * 18 16 14 37 37 H 1.07995 * 119.86926 * 359.97438 * 20 19 18 38 38 H 1.08004 * 119.89687 * 180.02562 * 21 20 19 39 39 H 0.96699 * 117.00179 * 179.97438 * 27 25 24 40 40 H 1.08000 * 120.10303 * 359.96995 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6273 1.9738 0.8577 5 6 3.5446 1.4434 0.0851 6 1 4.1319 1.8164 -0.7410 7 6 4.1714 0.9680 1.2174 8 7 5.4352 0.6077 1.1672 9 14 3.2254 0.8354 2.8227 10 1 4.1189 0.2996 3.8809 11 1 2.7361 2.1796 3.2212 12 1 2.0693 -0.0788 2.6419 13 7 1.6203 2.1088 -1.2353 14 6 0.4005 2.6766 -1.3137 15 8 -0.3504 2.6356 -0.3611 16 6 -0.0272 3.3564 -2.5729 17 8 0.7236 3.3971 -3.5258 18 7 -1.2471 3.9237 -2.6515 19 6 -1.6836 4.4791 -3.8585 20 6 -3.0108 4.3353 -4.2497 21 6 -3.4488 4.8816 -5.4400 22 6 -2.5699 5.5753 -6.2526 23 9 -3.0020 6.1078 -7.4166 24 6 -1.2334 5.7247 -5.8677 25 6 -0.2920 6.4643 -6.7307 26 8 -0.6772 6.9445 -7.7781 27 8 0.9945 6.6070 -6.3570 28 6 -0.7951 5.1766 -4.6605 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 5.9059 0.6065 0.3190 35 1 2.2203 2.1414 -1.9967 36 1 -1.8224 3.9470 -1.8709 37 1 -3.7015 3.7943 -3.6201 38 1 -4.4806 4.7666 -5.7376 39 1 1.5734 7.0991 -6.9552 40 1 0.2342 5.2927 -4.3549 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595030244.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:53 Heat of formation + Delta-G solvation = -173.816491 kcal Electronic energy + Delta-G solvation = -28662.901200 eV Core-core repulsion = 24164.586677 eV Total energy + Delta-G solvation = -4498.314523 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.116 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.25840 -41.20759 -40.40557 -39.29317 -38.12186 -36.36426 -35.78141 -34.89154 -32.57074 -32.08651 -31.56932 -29.87837 -27.60738 -25.33347 -25.06540 -23.25091 -22.44926 -21.59074 -20.60691 -19.79098 -19.19821 -18.35912 -18.16250 -17.77079 -17.33526 -16.62126 -16.55267 -16.29844 -15.98604 -15.62797 -15.48963 -15.30520 -14.68154 -14.27435 -13.97705 -13.84034 -13.59597 -13.46774 -13.22544 -12.90448 -12.79917 -12.57288 -12.41449 -12.12641 -11.88470 -11.85599 -11.47483 -11.03071 -10.99633 -10.84470 -10.59160 -10.56855 -10.00974 -9.79645 -9.72810 -9.37417 -9.19597 -8.61605 -8.48107 -8.39080 -6.68502 -4.32958 0.05607 0.58900 1.51094 2.09895 2.33166 2.59761 3.09144 3.30705 3.37240 3.41970 3.52028 3.69050 3.77345 4.13897 4.34653 4.39680 4.60417 4.77944 4.82040 4.91294 5.02859 5.30458 5.49666 5.51900 5.71180 5.83713 5.89888 5.93937 6.08749 6.13691 6.31069 6.47425 6.61153 6.70660 6.77275 6.82996 7.06806 7.19533 7.41646 7.54968 7.59249 8.09611 8.17949 8.38390 8.68917 9.35034 10.70894 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.020722 B = 0.002566 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.928817 B =10909.308331 C =11884.988942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.247 3.753 4 H 0.047 0.953 5 C -0.625 4.625 6 H 0.066 0.934 7 C 0.046 3.954 8 N -0.890 5.890 9 Si 1.034 2.966 10 H -0.282 1.282 11 H -0.279 1.279 12 H -0.270 1.270 13 N -0.658 5.658 14 C 0.496 3.504 15 O -0.530 6.530 16 C 0.508 3.492 17 O -0.500 6.500 18 N -0.652 5.652 19 C 0.123 3.877 20 C -0.072 4.072 21 C -0.147 4.147 22 C 0.151 3.849 23 F -0.115 7.115 24 C -0.149 4.149 25 C 0.530 3.470 26 O -0.503 6.503 27 O -0.504 6.504 28 C -0.032 4.032 29 H 0.054 0.946 30 H 0.043 0.957 31 H 0.034 0.966 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.272 0.728 35 H 0.407 0.593 36 H 0.427 0.573 37 H 0.149 0.851 38 H 0.153 0.847 39 H 0.418 0.582 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.772 8.401 -11.078 21.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.179 4.179 3 C 0.144 3.856 4 H 0.065 0.935 5 C -0.663 4.663 6 H 0.084 0.916 7 C -0.162 4.162 8 N -0.521 5.521 9 Si 0.861 3.139 10 H -0.208 1.208 11 H -0.205 1.205 12 H -0.196 1.196 13 N -0.307 5.307 14 C 0.275 3.725 15 O -0.408 6.408 16 C 0.291 3.709 17 O -0.372 6.372 18 N -0.300 5.300 19 C 0.029 3.971 20 C -0.092 4.092 21 C -0.166 4.166 22 C 0.130 3.870 23 F -0.093 7.093 24 C -0.152 4.152 25 C 0.373 3.627 26 O -0.392 6.392 27 O -0.316 6.316 28 C -0.053 4.053 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.242 0.758 36 H 0.266 0.734 37 H 0.166 0.834 38 H 0.170 0.830 39 H 0.277 0.723 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -16.853 7.869 -9.475 20.874 hybrid contribution 0.210 0.814 -2.335 2.481 sum -16.643 8.682 -11.810 22.178 Atomic orbital electron populations 1.21898 0.97352 0.99300 1.01644 1.22363 0.93816 0.99377 1.02295 1.19278 0.95961 0.88522 0.81845 0.93504 1.22041 0.89095 1.48921 1.06200 0.91624 1.25656 0.96440 0.92016 1.02125 1.70849 1.10928 1.40324 1.30023 0.84209 0.75823 0.77721 0.76190 1.20753 1.20541 1.19562 1.46224 1.13661 1.51940 1.18890 1.19560 0.84350 0.81537 0.87072 1.90748 1.52784 1.59771 1.37537 1.21002 0.81542 0.78699 0.89645 1.90781 1.51611 1.56620 1.38205 1.43185 1.18352 1.56497 1.11990 1.17625 0.93382 0.97299 0.88808 1.21142 0.94717 0.97631 0.95715 1.20918 1.00635 1.00408 0.94667 1.17656 0.90871 0.95336 0.83135 1.91603 1.89604 1.83322 1.44750 1.18945 0.91783 1.06807 0.97681 1.20444 0.81281 0.77183 0.83754 1.90956 1.78253 1.46096 1.23925 1.84589 1.20982 1.71800 1.54185 1.21519 1.01606 0.90782 0.91369 0.92664 0.93833 0.94668 0.92674 0.90963 0.91788 0.75812 0.73422 0.83371 0.82960 0.72330 0.81953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 8.48 37.16 0.32 -2.30 16 2 C -0.14 -2.89 5.32 -26.73 -0.14 -3.03 16 3 C 0.25 5.47 1.85 -69.08 -0.13 5.34 16 4 H 0.05 1.10 6.21 -51.93 -0.32 0.78 16 5 C -0.63 -16.10 8.99 -34.44 -0.31 -16.41 16 6 H 0.07 1.79 7.96 -52.49 -0.42 1.38 16 7 C 0.05 1.22 5.29 -17.82 -0.09 1.13 16 8 N -0.89 -25.53 13.69 55.43 0.76 -24.77 16 9 Si 1.03 23.55 26.37 -169.99 -4.48 19.06 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 12 H -0.27 -5.67 5.79 56.52 0.33 -5.34 16 13 N -0.66 -12.61 5.00 -55.40 -0.28 -12.88 16 14 C 0.50 8.45 6.38 -11.63 -0.07 8.38 16 15 O -0.53 -9.58 13.61 5.48 0.07 -9.50 16 16 C 0.51 7.28 7.71 -11.64 -0.09 7.19 16 17 O -0.50 -7.98 14.16 5.47 0.08 -7.90 16 18 N -0.65 -6.99 5.31 -10.32 -0.05 -7.05 16 19 C 0.12 1.22 6.22 -83.77 -0.52 0.70 16 20 C -0.07 -0.51 9.96 -39.31 -0.39 -0.90 16 21 C -0.15 -1.08 10.00 -39.59 -0.40 -1.47 16 22 C 0.15 1.55 7.28 -38.93 -0.28 1.26 16 23 F -0.11 -1.36 15.54 2.25 0.03 -1.33 16 24 C -0.15 -1.68 5.88 -104.95 -0.62 -2.30 16 25 C 0.53 6.26 8.27 34.54 0.29 6.55 16 26 O -0.50 -7.13 16.12 -19.26 -0.31 -7.44 16 27 O -0.50 -4.75 12.68 -40.56 -0.51 -5.27 16 28 C -0.03 -0.37 8.24 -38.95 -0.32 -0.69 16 29 H 0.05 1.02 7.75 -51.93 -0.40 0.62 16 30 H 0.04 0.76 5.68 -51.93 -0.30 0.47 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.07 1.56 4.99 -51.93 -0.26 1.30 16 34 H 0.27 7.75 8.73 -40.82 -0.36 7.39 16 35 H 0.41 7.53 8.00 -40.82 -0.33 7.20 16 36 H 0.43 3.75 8.30 -40.82 -0.34 3.42 16 37 H 0.15 0.64 8.06 -52.49 -0.42 0.22 16 38 H 0.15 0.70 8.06 -52.48 -0.42 0.28 16 39 H 0.42 1.95 9.11 45.56 0.42 2.36 16 40 H 0.16 2.04 6.06 -52.49 -0.32 1.73 16 LS Contribution 347.54 15.07 5.24 5.24 Total: -1.00 -32.22 347.54 -5.40 -37.62 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -3.18 Total: 10.77 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -2.77 Total: 3.45 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: 0.43 Total: -44.70 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -0.67 Total: -30.12 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.03 Total: -1.33 kcal Atomic # 14 Polarization: 23.55 SS G_CDS: -4.48 Total: 19.06 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.22 -5.40 -37.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030244.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.193 kcal (2) G-P(sol) polarization free energy of solvation -32.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds