Wall clock time and date at job start Tue Mar 31 2020 21:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47144 * 2 1 4 4 H 1.09007 * 109.47106 * 56.56890 * 3 2 1 5 5 C 1.50699 * 109.47216 * 176.56723 * 3 2 1 6 6 H 1.08002 * 119.99564 * 114.62740 * 5 3 2 7 7 C 1.37875 * 120.00281 * 294.62919 * 5 3 2 8 8 N 1.31508 * 119.99932 * 160.53695 * 7 5 3 9 9 Si 1.86800 * 120.00043 * 340.54421 * 7 5 3 10 10 H 1.48497 * 109.47069 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.46758 * 299.99336 * 9 7 5 12 12 H 1.48496 * 109.47445 * 59.99472 * 9 7 5 13 13 N 1.46494 * 109.46901 * 296.57367 * 3 2 1 14 14 C 1.34776 * 120.00298 * 85.00177 * 13 3 2 15 15 O 1.21366 * 120.00085 * 359.97438 * 14 13 3 16 16 C 1.49350 * 120.00078 * 179.97438 * 14 13 3 17 17 O 1.21380 * 119.99986 * 0.02562 * 16 14 13 18 18 N 1.34767 * 119.99860 * 179.97438 * 16 14 13 19 19 C 1.39847 * 119.99919 * 184.40235 * 18 16 14 20 20 C 1.39112 * 119.96196 * 141.45260 * 19 18 16 21 21 C 1.38098 * 120.27463 * 179.97438 * 20 19 18 22 22 C 1.38343 * 120.20598 * 0.04269 * 21 20 19 23 23 F 1.35097 * 120.03665 * 179.97438 * 22 21 20 24 24 C 1.39885 * 119.92781 * 359.97438 * 22 21 20 25 25 C 1.47583 * 120.13774 * 180.02562 * 24 22 21 26 26 O 1.21491 * 119.99837 * 359.97438 * 25 24 22 27 27 O 1.34725 * 120.00026 * 179.97438 * 25 24 22 28 28 C 1.38531 * 119.96538 * 321.18265 * 19 18 16 29 29 H 1.09002 * 109.47255 * 300.00097 * 1 2 3 30 30 H 1.09002 * 109.47308 * 59.99811 * 1 2 3 31 31 H 1.08997 * 109.47125 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47218 * 240.00097 * 2 1 3 33 33 H 1.09002 * 109.47098 * 119.99677 * 2 1 3 34 34 H 0.97004 * 120.00257 * 354.92743 * 8 7 5 35 35 H 0.96999 * 119.99676 * 264.99482 * 13 3 2 36 36 H 0.96994 * 120.00537 * 4.41167 * 18 16 14 37 37 H 1.07995 * 119.86926 * 359.97438 * 20 19 18 38 38 H 1.08004 * 119.89687 * 180.02562 * 21 20 19 39 39 H 0.96699 * 117.00179 * 179.97438 * 27 25 24 40 40 H 1.08000 * 120.10303 * 359.96995 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6273 1.9738 0.8577 5 6 3.5446 1.4434 0.0851 6 1 4.1319 1.8164 -0.7410 7 6 4.1714 0.9680 1.2174 8 7 5.4352 0.6077 1.1672 9 14 3.2254 0.8354 2.8227 10 1 4.1189 0.2996 3.8809 11 1 2.7361 2.1796 3.2212 12 1 2.0693 -0.0788 2.6419 13 7 1.6203 2.1088 -1.2353 14 6 0.4005 2.6766 -1.3137 15 8 -0.3504 2.6356 -0.3611 16 6 -0.0272 3.3564 -2.5729 17 8 0.7236 3.3971 -3.5258 18 7 -1.2471 3.9237 -2.6515 19 6 -1.6836 4.4791 -3.8585 20 6 -3.0108 4.3353 -4.2497 21 6 -3.4488 4.8816 -5.4400 22 6 -2.5699 5.5753 -6.2526 23 9 -3.0020 6.1078 -7.4166 24 6 -1.2334 5.7247 -5.8677 25 6 -0.2920 6.4643 -6.7307 26 8 -0.6772 6.9445 -7.7781 27 8 0.9945 6.6070 -6.3570 28 6 -0.7951 5.1766 -4.6605 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 5.9059 0.6065 0.3190 35 1 2.2203 2.1414 -1.9967 36 1 -1.8224 3.9470 -1.8709 37 1 -3.7015 3.7943 -3.6201 38 1 -4.4806 4.7666 -5.7376 39 1 1.5734 7.0991 -6.9552 40 1 0.2342 5.2927 -4.3549 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595030244.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:52 Heat of formation + Delta-G solvation = -198.618551 kcal Electronic energy + Delta-G solvation = -28663.976698 eV Core-core repulsion = 24164.586677 eV Total energy + Delta-G solvation = -4499.390021 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.116 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.08708 -42.25486 -41.37309 -40.44094 -39.18602 -37.32039 -37.23182 -35.97478 -34.47834 -33.14861 -32.80378 -30.74066 -29.32752 -26.31645 -26.12133 -24.39814 -23.90572 -22.59512 -21.82599 -21.30664 -20.48366 -19.55927 -19.04232 -18.86201 -18.62483 -17.77922 -17.52783 -17.18335 -17.03881 -16.84474 -16.68207 -16.35187 -15.69540 -15.54944 -15.22229 -15.07722 -14.57312 -14.54109 -14.49361 -14.33676 -14.12061 -13.94513 -13.67786 -13.53855 -12.99826 -12.74197 -12.67606 -12.63566 -12.46022 -12.26134 -11.91706 -11.77651 -11.49064 -11.42183 -11.12276 -10.72974 -10.51485 -10.41246 -9.99958 -9.43746 -8.81138 -6.45359 -0.71295 -0.21628 0.36879 1.17310 1.30978 1.49870 1.54150 1.73437 1.84904 2.07001 2.40411 2.46207 2.61141 2.94420 2.98188 3.36626 3.49659 3.72338 3.86231 4.10309 4.23768 4.31409 4.39773 4.51471 4.58436 4.76711 4.80429 4.86477 4.94714 5.03999 5.11400 5.16175 5.25266 5.38507 5.41820 5.52822 5.55261 5.62751 5.86588 6.00051 6.43105 6.50480 6.67965 6.79760 6.98950 7.30538 8.57361 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.020722 B = 0.002566 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.928817 B =10909.308331 C =11884.988942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.138 4.138 3 C 0.252 3.748 4 H 0.040 0.960 5 C -0.624 4.624 6 H 0.036 0.964 7 C 0.000 4.000 8 N -0.924 5.924 9 Si 1.068 2.932 10 H -0.286 1.286 11 H -0.268 1.268 12 H -0.239 1.239 13 N -0.670 5.670 14 C 0.500 3.500 15 O -0.535 6.535 16 C 0.516 3.484 17 O -0.520 6.520 18 N -0.630 5.630 19 C 0.109 3.891 20 C -0.046 4.046 21 C -0.129 4.129 22 C 0.139 3.861 23 F -0.127 7.127 24 C -0.168 4.168 25 C 0.530 3.470 26 O -0.535 6.535 27 O -0.504 6.504 28 C -0.042 4.042 29 H 0.052 0.948 30 H 0.046 0.954 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.259 0.741 35 H 0.407 0.593 36 H 0.439 0.561 37 H 0.190 0.810 38 H 0.189 0.811 39 H 0.435 0.565 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.548 8.042 -10.554 24.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.177 4.177 3 C 0.148 3.852 4 H 0.057 0.943 5 C -0.661 4.661 6 H 0.054 0.946 7 C -0.202 4.202 8 N -0.558 5.558 9 Si 0.889 3.111 10 H -0.212 1.212 11 H -0.194 1.194 12 H -0.163 1.163 13 N -0.319 5.319 14 C 0.280 3.720 15 O -0.414 6.414 16 C 0.298 3.702 17 O -0.395 6.395 18 N -0.279 5.279 19 C 0.015 3.985 20 C -0.065 4.065 21 C -0.148 4.148 22 C 0.119 3.881 23 F -0.105 7.105 24 C -0.171 4.171 25 C 0.375 3.625 26 O -0.427 6.427 27 O -0.318 6.318 28 C -0.062 4.062 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.242 0.758 36 H 0.280 0.720 37 H 0.207 0.793 38 H 0.207 0.793 39 H 0.298 0.702 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -20.670 7.540 -8.969 23.760 hybrid contribution 1.368 1.009 -2.590 3.098 sum -19.302 8.549 -11.559 24.068 Atomic orbital electron populations 1.21795 0.94851 1.00921 1.01662 1.22259 0.95988 0.97750 1.01696 1.18981 0.93362 0.89882 0.82960 0.94250 1.22229 0.91378 1.47511 1.05006 0.94579 1.26907 0.96445 0.91451 1.05375 1.70959 1.12272 1.43236 1.29303 0.83790 0.75769 0.78934 0.72598 1.21220 1.19362 1.16278 1.46047 1.14904 1.52976 1.18010 1.19882 0.83331 0.80755 0.87994 1.90735 1.52752 1.59726 1.38175 1.20346 0.82639 0.79082 0.88109 1.90796 1.52531 1.57747 1.38433 1.42943 1.16987 1.55033 1.12920 1.17777 0.94503 0.97870 0.88357 1.21526 0.93601 0.95904 0.95495 1.21320 1.01649 0.98210 0.93623 1.18023 0.91029 0.95874 0.83215 1.91574 1.89623 1.83691 1.45654 1.19005 0.92434 1.07776 0.97895 1.20679 0.81812 0.76635 0.83376 1.90931 1.78871 1.47677 1.25235 1.84570 1.20577 1.71873 1.54742 1.21340 1.01181 0.91877 0.91846 0.92881 0.93488 0.92284 0.93052 0.91866 0.93224 0.75755 0.71999 0.79317 0.79343 0.70244 0.83882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.47 8.48 71.98 0.61 -3.86 16 2 C -0.14 -5.50 5.32 30.60 0.16 -5.34 16 3 C 0.25 11.03 1.85 44.25 0.08 11.11 16 4 H 0.04 1.81 6.21 -2.38 -0.01 1.79 16 5 C -0.62 -32.78 8.99 25.60 0.23 -32.55 16 6 H 0.04 2.06 7.96 -2.91 -0.02 2.04 16 7 C 0.00 -0.02 5.29 84.66 0.45 0.43 16 8 N -0.92 -54.59 13.69 21.45 0.29 -54.30 16 9 Si 1.07 46.87 26.37 68.60 1.81 48.68 16 10 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 11 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 12 H -0.24 -9.24 5.79 99.48 0.58 -8.67 16 13 N -0.67 -25.40 5.00 -447.53 -2.24 -27.64 16 14 C 0.50 16.29 6.38 87.24 0.56 16.85 16 15 O -0.54 -18.05 13.61 -3.30 -0.04 -18.10 16 16 C 0.52 13.98 7.71 87.24 0.67 14.65 16 17 O -0.52 -16.37 14.16 -3.34 -0.05 -16.42 16 18 N -0.63 -11.77 5.31 -304.91 -1.62 -13.39 16 19 C 0.11 1.86 6.22 38.14 0.24 2.09 16 20 C -0.05 -0.44 9.96 22.45 0.22 -0.22 16 21 C -0.13 -1.35 10.00 22.26 0.22 -1.13 16 22 C 0.14 2.60 7.28 22.69 0.17 2.77 16 23 F -0.13 -2.89 15.54 44.97 0.70 -2.19 16 24 C -0.17 -3.70 5.88 -20.07 -0.12 -3.82 16 25 C 0.53 12.76 8.27 70.29 0.58 13.34 16 26 O -0.54 -15.53 16.12 19.86 0.32 -15.21 16 27 O -0.50 -9.73 12.68 -56.35 -0.71 -10.45 16 28 C -0.04 -0.91 8.24 22.68 0.19 -0.72 16 29 H 0.05 1.78 7.75 -2.39 -0.02 1.76 16 30 H 0.05 1.51 5.68 -2.39 -0.01 1.49 16 31 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.06 2.61 4.99 -2.39 -0.01 2.60 16 34 H 0.26 15.43 8.73 -92.71 -0.81 14.62 16 35 H 0.41 15.32 8.00 -92.71 -0.74 14.58 16 36 H 0.44 6.12 8.30 -92.71 -0.77 5.35 16 37 H 0.19 0.37 8.06 -2.91 -0.02 0.34 16 38 H 0.19 0.67 8.06 -2.91 -0.02 0.64 16 39 H 0.44 4.19 9.11 -74.06 -0.67 3.51 16 40 H 0.14 3.65 6.06 -2.91 -0.02 3.64 16 Total: -1.00 -72.10 347.54 1.53 -70.58 By element: Atomic # 1 Polarization: 26.04 SS G_CDS: -1.19 Total: 24.85 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: 4.26 Total: 13.59 kcal Atomic # 7 Polarization: -91.77 SS G_CDS: -3.56 Total: -95.33 kcal Atomic # 8 Polarization: -59.69 SS G_CDS: -0.49 Total: -60.18 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.70 Total: -2.19 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 1.81 Total: 48.68 kcal Total: -72.10 1.53 -70.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030244.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.044 kcal (2) G-P(sol) polarization free energy of solvation -72.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds