Wall clock time and date at job start Tue Mar 31 2020 21:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46944 * 2 1 4 4 H 1.08999 * 109.47083 * 305.00156 * 3 2 1 5 5 C 1.50700 * 109.46849 * 184.99595 * 3 2 1 6 6 H 1.08002 * 119.99512 * 240.00049 * 5 3 2 7 7 C 1.37868 * 119.99901 * 60.00292 * 5 3 2 8 8 N 1.31510 * 120.00306 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 120.00064 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46913 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47108 * 119.99839 * 9 7 5 12 12 H 1.48499 * 109.47545 * 240.00089 * 9 7 5 13 13 N 1.46508 * 109.46997 * 64.99754 * 3 2 1 14 14 C 1.34777 * 120.00093 * 275.00299 * 13 3 2 15 15 O 1.21358 * 119.99634 * 359.97438 * 14 13 3 16 16 C 1.49362 * 120.00051 * 180.02562 * 14 13 3 17 17 O 1.21369 * 119.99816 * 359.97438 * 16 14 13 18 18 N 1.34774 * 119.99883 * 180.27286 * 16 14 13 19 19 C 1.39256 * 119.99977 * 174.44727 * 18 16 14 20 20 C 1.39283 * 119.89688 * 326.36672 * 19 18 16 21 21 C 1.36552 * 120.27385 * 179.97438 * 20 19 18 22 22 C 1.39886 * 120.07298 * 0.02562 * 21 20 19 23 23 C 1.47308 * 120.09341 * 179.97438 * 22 21 20 24 24 O 1.21525 * 120.00221 * 179.97438 * 23 22 21 25 25 O 1.34769 * 120.00330 * 0.02562 * 23 22 21 26 26 C 1.40079 * 119.80691 * 0.02562 * 22 21 20 27 27 F 1.35097 * 120.13502 * 179.97438 * 26 22 21 28 28 C 1.38053 * 119.72367 * 359.72594 * 26 22 21 29 29 H 1.08998 * 109.47067 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47469 * 300.00187 * 1 2 3 31 31 H 1.09009 * 109.46783 * 60.00238 * 1 2 3 32 32 H 1.08994 * 109.47744 * 240.00288 * 2 1 3 33 33 H 1.08996 * 109.46981 * 119.99624 * 2 1 3 34 34 H 0.96999 * 120.00830 * 180.02562 * 8 7 5 35 35 H 0.96999 * 119.99669 * 94.99954 * 13 3 2 36 36 H 0.96997 * 119.99862 * 354.43955 * 18 16 14 37 37 H 1.08000 * 119.86903 * 359.97438 * 20 19 18 38 38 H 1.08001 * 119.96453 * 180.02562 * 21 20 19 39 39 H 0.96703 * 116.99777 * 179.97438 * 25 23 22 40 40 H 1.07996 * 120.03146 * 180.27884 * 28 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1237 6 1 4.1471 1.8890 0.6525 7 6 4.1432 0.8785 -1.2278 8 7 3.4063 0.3367 -2.1727 9 14 6.0050 0.8813 -1.3816 10 1 6.5987 1.5463 -0.1939 11 1 6.4971 -0.5175 -1.4627 12 1 6.3992 1.6168 -2.6099 13 7 1.6523 2.0976 1.2519 14 6 0.4349 2.6644 1.3670 15 8 -0.3399 2.6326 0.4335 16 6 0.0399 3.3326 2.6430 17 8 0.8151 3.3648 3.5764 18 7 -1.1794 3.8946 2.7600 19 6 -1.5917 4.4150 3.9841 20 6 -1.1768 3.8130 5.1696 21 6 -1.5761 4.3172 6.3742 22 6 -2.4056 5.4425 6.4229 23 6 -2.8370 5.9865 7.7221 24 8 -3.5573 6.9644 7.7624 25 8 -2.4321 5.4003 8.8661 26 6 -2.8257 6.0499 5.2326 27 9 -3.6273 7.1367 5.2718 28 6 -2.4130 5.5364 4.0194 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5137 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8293 -0.0617 -2.9493 35 1 2.2718 2.1232 1.9978 36 1 -1.7698 3.9367 1.9916 37 1 -0.5367 2.9438 5.1361 38 1 -1.2510 3.8467 7.2904 39 1 -2.7408 5.7934 9.6939 40 1 -2.7302 6.0035 3.0987 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595030835.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:04 Heat of formation + Delta-G solvation = -196.522225 kcal Electronic energy + Delta-G solvation = -28293.104446 eV Core-core repulsion = 23793.805329 eV Total energy + Delta-G solvation = -4499.299117 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.116 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.13860 -42.30185 -41.30011 -40.41824 -39.16091 -37.22820 -37.10705 -36.13629 -34.32050 -32.81500 -32.14733 -31.42363 -29.19460 -27.02247 -25.31197 -24.37297 -24.26685 -22.71697 -21.78770 -21.22534 -20.26220 -19.29040 -19.22039 -18.42914 -18.21836 -17.57213 -17.50591 -17.17736 -17.08775 -16.76776 -16.55808 -16.31747 -16.03493 -15.63228 -15.46911 -15.09557 -14.68726 -14.60889 -14.34779 -13.89235 -13.84388 -13.65608 -13.47119 -13.19738 -12.95972 -12.82186 -12.71660 -12.65218 -12.59649 -12.14072 -12.09525 -11.78306 -11.74323 -11.58088 -11.07931 -10.70681 -10.54310 -10.14314 -9.84102 -9.61144 -8.17927 -6.34408 -0.79599 -0.01069 0.31698 1.12945 1.36611 1.44883 1.48186 1.58517 1.93677 2.10279 2.38683 2.45354 2.61162 2.97408 3.12558 3.43550 3.49978 3.78646 3.88554 3.99085 4.19399 4.51268 4.57609 4.67257 4.73607 4.83436 4.85104 4.93458 5.03937 5.05439 5.24624 5.36558 5.40775 5.50675 5.53100 5.58210 5.67154 5.79286 5.88988 6.13553 6.42444 6.68250 6.74576 6.90468 7.10652 7.37707 8.87221 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.024353 B = 0.002168 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.467290 B =12915.002183 C =13283.300468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.124 4.124 3 C 0.276 3.724 4 H 0.016 0.984 5 C -0.551 4.551 6 H 0.069 0.931 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.966 3.034 10 H -0.264 1.264 11 H -0.279 1.279 12 H -0.284 1.284 13 N -0.669 5.669 14 C 0.496 3.504 15 O -0.543 6.543 16 C 0.524 3.476 17 O -0.504 6.504 18 N -0.636 5.636 19 C 0.214 3.786 20 C -0.153 4.153 21 C 0.005 3.995 22 C -0.197 4.197 23 C 0.535 3.465 24 O -0.544 6.544 25 O -0.498 6.498 26 C 0.175 3.825 27 F -0.123 7.123 28 C -0.185 4.185 29 H 0.047 0.953 30 H 0.043 0.957 31 H 0.035 0.965 32 H 0.077 0.923 33 H 0.041 0.959 34 H 0.266 0.734 35 H 0.410 0.590 36 H 0.437 0.563 37 H 0.149 0.851 38 H 0.177 0.823 39 H 0.436 0.564 40 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.099 6.501 17.589 21.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.163 4.163 3 C 0.174 3.826 4 H 0.034 0.966 5 C -0.589 4.589 6 H 0.087 0.913 7 C -0.179 4.179 8 N -0.548 5.548 9 Si 0.791 3.209 10 H -0.188 1.188 11 H -0.205 1.205 12 H -0.210 1.210 13 N -0.318 5.318 14 C 0.275 3.725 15 O -0.422 6.422 16 C 0.306 3.694 17 O -0.377 6.377 18 N -0.283 5.283 19 C 0.117 3.883 20 C -0.173 4.173 21 C -0.014 4.014 22 C -0.200 4.200 23 C 0.381 3.619 24 O -0.436 6.436 25 O -0.312 6.312 26 C 0.155 3.845 27 F -0.101 7.101 28 C -0.206 4.206 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.095 0.905 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.246 0.754 36 H 0.278 0.722 37 H 0.167 0.833 38 H 0.194 0.806 39 H 0.298 0.702 40 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -11.100 6.466 16.999 21.307 hybrid contribution 0.497 0.510 -0.091 0.718 sum -10.603 6.976 16.909 21.142 Atomic orbital electron populations 1.21712 0.96459 0.99703 1.00508 1.21825 0.94224 0.98524 1.01748 1.18646 0.94016 0.89620 0.80341 0.96599 1.21548 0.91292 1.39266 1.06780 0.91271 1.25648 1.02949 0.94297 0.95008 1.70006 1.36864 1.38066 1.09820 0.85384 0.79534 0.77833 0.78126 1.18840 1.20451 1.20953 1.46232 1.14262 1.52966 1.18378 1.19894 0.83760 0.81006 0.87807 1.90761 1.51405 1.59802 1.40231 1.20340 0.81999 0.78640 0.88423 1.90773 1.50853 1.55922 1.40158 1.43066 1.16612 1.56134 1.12499 1.17776 0.93546 0.91268 0.85661 1.21109 1.03134 1.02431 0.90675 1.21120 0.89991 0.90806 0.99461 1.19211 1.08759 1.02650 0.89414 1.20459 0.76276 0.79973 0.85192 1.90957 1.36743 1.27342 1.88529 1.84501 1.70856 1.58540 1.17317 1.17430 0.90093 0.84062 0.92938 1.91588 1.70138 1.51223 1.97191 1.20879 1.04350 0.97030 0.98292 0.93347 0.93791 0.94609 0.90470 0.94000 0.92432 0.75446 0.72186 0.83312 0.80603 0.70156 0.80952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.00 8.51 71.98 0.61 -4.39 16 2 C -0.12 -5.60 5.45 30.60 0.17 -5.43 16 3 C 0.28 13.00 2.24 44.25 0.10 13.09 16 4 H 0.02 0.88 7.58 -2.39 -0.02 0.86 16 5 C -0.55 -27.60 8.73 25.60 0.22 -27.38 16 6 H 0.07 3.33 7.74 -2.91 -0.02 3.30 16 7 C 0.02 1.12 5.29 84.65 0.45 1.56 16 8 N -0.91 -48.99 11.29 21.44 0.24 -48.74 16 9 Si 0.97 40.50 29.54 68.60 2.03 42.52 16 10 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 11 H -0.28 -11.48 7.11 99.48 0.71 -10.78 16 12 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 13 N -0.67 -25.67 5.01 -447.49 -2.24 -27.91 16 14 C 0.50 17.06 6.45 87.24 0.56 17.62 16 15 O -0.54 -20.74 13.62 -3.27 -0.04 -20.78 16 16 C 0.52 14.30 7.61 87.24 0.66 14.96 16 17 O -0.50 -14.73 14.15 -3.31 -0.05 -14.78 16 18 N -0.64 -13.17 5.30 -304.85 -1.62 -14.79 16 19 C 0.21 4.03 6.27 38.41 0.24 4.28 16 20 C -0.15 -2.79 8.57 22.13 0.19 -2.60 16 21 C 0.00 0.07 9.55 22.27 0.21 0.29 16 22 C -0.20 -3.67 5.88 -20.05 -0.12 -3.79 16 23 C 0.54 10.15 8.26 70.21 0.58 10.73 16 24 O -0.54 -14.08 16.12 19.75 0.32 -13.76 16 25 O -0.50 -5.51 12.67 -56.79 -0.72 -6.23 16 26 C 0.18 3.51 7.28 22.67 0.17 3.67 16 27 F -0.12 -2.93 15.55 44.97 0.70 -2.24 16 28 C -0.18 -3.12 9.93 22.42 0.22 -2.90 16 29 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.04 1.63 5.64 -2.39 -0.01 1.62 16 31 H 0.03 1.51 7.85 -2.38 -0.02 1.49 16 32 H 0.08 3.93 5.95 -2.39 -0.01 3.92 16 33 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.27 13.61 8.31 -92.71 -0.77 12.84 16 35 H 0.41 14.48 8.01 -92.71 -0.74 13.74 16 36 H 0.44 7.68 8.29 -92.71 -0.77 6.91 16 37 H 0.15 2.89 6.41 -2.91 -0.02 2.87 16 38 H 0.18 1.81 7.60 -2.91 -0.02 1.79 16 39 H 0.44 0.96 9.11 -74.06 -0.67 0.28 16 40 H 0.17 2.15 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -65.57 351.44 1.86 -63.71 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: -1.03 Total: 23.28 kcal Atomic # 6 Polarization: 15.44 SS G_CDS: 4.27 Total: 19.71 kcal Atomic # 7 Polarization: -87.82 SS G_CDS: -3.62 Total: -91.44 kcal Atomic # 8 Polarization: -55.06 SS G_CDS: -0.49 Total: -55.55 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.70 Total: -2.24 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.52 kcal Total: -65.57 1.86 -63.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030835.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.812 kcal (2) G-P(sol) polarization free energy of solvation -65.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds