Wall clock time and date at job start Tue Mar 31 2020 21:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47817 * 2 1 4 4 H 1.09000 * 109.46931 * 306.75866 * 3 2 1 5 5 C 1.50702 * 109.47516 * 186.75420 * 3 2 1 6 6 H 1.08001 * 120.00102 * 244.98830 * 5 3 2 7 7 C 1.37872 * 119.99608 * 64.99046 * 5 3 2 8 8 N 1.31517 * 120.00068 * 186.04388 * 7 5 3 9 9 Si 1.86799 * 120.00309 * 6.04579 * 7 5 3 10 10 H 1.48499 * 109.47131 * 269.99962 * 9 7 5 11 11 H 1.48503 * 109.47062 * 29.99857 * 9 7 5 12 12 H 1.48505 * 109.47006 * 149.99850 * 9 7 5 13 13 N 1.46501 * 109.47031 * 66.75567 * 3 2 1 14 14 C 1.34780 * 119.99985 * 275.00212 * 13 3 2 15 15 O 1.21367 * 119.99912 * 359.97438 * 14 13 3 16 16 C 1.49346 * 120.00089 * 179.97438 * 14 13 3 17 17 O 1.21381 * 119.99947 * 0.02562 * 16 14 13 18 18 N 1.34780 * 120.00089 * 180.02562 * 16 14 13 19 19 C 1.39858 * 120.00072 * 184.97249 * 18 16 14 20 20 C 1.38515 * 120.00810 * 29.93768 * 19 18 16 21 21 C 1.39609 * 119.79199 * 179.79083 * 20 19 18 22 22 C 1.47610 * 120.09513 * 180.20856 * 21 20 19 23 23 O 1.21491 * 119.99550 * 0.27263 * 22 21 20 24 24 O 1.34723 * 120.00335 * 180.27758 * 22 21 20 25 25 C 1.39734 * 119.81627 * 0.48413 * 21 20 19 26 26 C 1.37890 * 120.01886 * 359.76888 * 25 21 20 27 27 C 1.38507 * 120.20980 * 359.97438 * 26 25 21 28 28 F 1.35100 * 119.90884 * 180.02562 * 27 26 25 29 29 H 1.09000 * 109.47010 * 59.99690 * 1 2 3 30 30 H 1.08996 * 109.47654 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46814 * 300.00148 * 1 2 3 32 32 H 1.09003 * 109.46814 * 239.99852 * 2 1 3 33 33 H 1.08995 * 109.47014 * 120.00809 * 2 1 3 34 34 H 0.97004 * 119.99873 * 354.97730 * 8 7 5 35 35 H 0.96997 * 120.00189 * 94.99761 * 13 3 2 36 36 H 0.96999 * 119.99803 * 4.97311 * 18 16 14 37 37 H 1.07997 * 120.10625 * 0.02562 * 20 19 18 38 38 H 0.96707 * 117.00111 * 180.02562 * 24 22 21 39 39 H 1.07995 * 119.98852 * 179.74265 * 25 21 20 40 40 H 1.07999 * 119.89521 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5814 1.9899 -0.8233 5 6 3.5378 1.4456 -0.1671 6 1 4.1694 1.8086 0.6302 7 6 4.1017 0.9851 -1.3379 8 7 5.4084 0.8760 -1.4400 9 14 3.0100 0.5160 -2.7792 10 1 2.6487 -0.9209 -2.6795 11 1 1.7747 1.3399 -2.7532 12 1 3.7385 0.7562 -4.0508 13 7 1.6890 2.0845 1.2691 14 6 0.4757 2.6501 1.4252 15 8 -0.3259 2.6279 0.5142 16 6 0.1175 3.3042 2.7191 17 8 0.9194 3.3269 3.6301 18 7 -1.0960 3.8694 2.8754 19 6 -1.3946 4.5720 4.0472 20 6 -0.3873 5.2225 4.7407 21 6 -0.6912 5.9261 5.9076 22 6 0.3762 6.6256 6.6493 23 8 1.5203 6.5936 6.2417 24 8 0.0819 7.2994 7.7782 25 6 -2.0077 5.9616 6.3746 26 6 -3.0036 5.3068 5.6811 27 6 -2.7041 4.6129 4.5204 28 9 -3.6846 3.9741 3.8455 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 5.9788 1.1874 -0.7199 35 1 2.3297 2.1025 1.9971 36 1 -1.7623 3.7889 2.1750 37 1 0.6293 5.1887 4.3777 38 1 0.8141 7.7420 8.2289 39 1 -2.2451 6.5015 7.2793 40 1 -4.0203 5.3352 6.0442 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604981898.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:13 Heat of formation + Delta-G solvation = -174.313531 kcal Electronic energy + Delta-G solvation = -28779.659753 eV Core-core repulsion = 24281.323676 eV Total energy + Delta-G solvation = -4498.336076 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.116 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.43295 -41.22197 -40.49413 -39.19865 -38.14912 -36.42397 -35.84340 -35.07552 -32.52972 -31.61688 -31.44714 -30.41024 -27.59315 -25.35772 -25.03520 -23.15482 -22.35714 -21.72926 -20.69049 -19.79713 -19.13879 -18.59142 -18.17169 -17.68857 -17.33943 -16.82097 -16.55635 -16.26140 -15.93529 -15.84097 -15.55161 -15.21777 -14.52012 -14.43717 -14.21869 -13.90153 -13.54708 -13.43232 -13.14301 -12.91665 -12.77403 -12.55366 -12.40692 -12.15932 -11.94311 -11.89801 -11.40507 -11.07329 -11.03514 -10.95817 -10.81930 -10.57264 -9.91474 -9.79331 -9.50027 -9.32523 -8.99441 -8.67325 -8.62696 -8.36832 -6.63207 -4.31993 0.04030 0.60924 1.52717 2.07139 2.24438 2.60437 3.12799 3.30160 3.39429 3.43049 3.52381 3.57465 3.77499 4.15560 4.34413 4.50309 4.53365 4.67498 4.77956 5.04835 5.12051 5.29366 5.48549 5.57565 5.74162 5.80773 5.88475 5.94065 6.07097 6.09734 6.29894 6.51301 6.59937 6.68877 6.72728 6.83535 7.03602 7.17392 7.42099 7.52098 7.56318 8.08922 8.20403 8.39986 8.71046 9.39273 10.77990 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.016698 B = 0.002844 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.464202 B = 9844.142564 C =11226.470714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.139 4.139 3 C 0.239 3.761 4 H 0.055 0.945 5 C -0.614 4.614 6 H 0.066 0.934 7 C 0.038 3.962 8 N -0.900 5.900 9 Si 1.048 2.952 10 H -0.279 1.279 11 H -0.273 1.273 12 H -0.286 1.286 13 N -0.658 5.658 14 C 0.497 3.503 15 O -0.527 6.527 16 C 0.509 3.491 17 O -0.495 6.495 18 N -0.648 5.648 19 C 0.112 3.888 20 C -0.036 4.036 21 C -0.118 4.118 22 C 0.528 3.472 23 O -0.500 6.500 24 O -0.513 6.513 25 C -0.050 4.050 26 C -0.146 4.146 27 C 0.110 3.890 28 F -0.126 7.126 29 H 0.054 0.946 30 H 0.036 0.964 31 H 0.047 0.953 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.270 0.730 35 H 0.407 0.593 36 H 0.429 0.571 37 H 0.167 0.833 38 H 0.417 0.583 39 H 0.151 0.849 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.903 10.540 16.506 26.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.178 4.178 3 C 0.137 3.863 4 H 0.073 0.927 5 C -0.652 4.652 6 H 0.084 0.916 7 C -0.169 4.169 8 N -0.533 5.533 9 Si 0.877 3.123 10 H -0.206 1.206 11 H -0.198 1.198 12 H -0.212 1.212 13 N -0.307 5.307 14 C 0.275 3.725 15 O -0.405 6.405 16 C 0.292 3.708 17 O -0.367 6.367 18 N -0.296 5.296 19 C 0.016 3.984 20 C -0.057 4.057 21 C -0.120 4.120 22 C 0.371 3.629 23 O -0.388 6.388 24 O -0.325 6.325 25 C -0.069 4.069 26 C -0.165 4.165 27 C 0.088 3.912 28 F -0.104 7.104 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.242 0.758 36 H 0.268 0.732 37 H 0.184 0.816 38 H 0.276 0.724 39 H 0.169 0.831 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -17.793 9.609 14.533 24.903 hybrid contribution 0.314 0.724 1.849 2.011 sum -17.480 10.334 16.382 26.090 Atomic orbital electron populations 1.21920 0.97076 0.99471 1.01997 1.22288 0.94078 0.99473 1.01949 1.19503 0.96855 0.88906 0.81052 0.92718 1.22151 0.89337 1.49222 1.04498 0.91631 1.25718 0.97819 0.93585 0.99763 1.70821 1.03598 1.42099 1.36804 0.83957 0.75269 0.77205 0.75884 1.20579 1.19816 1.21249 1.46218 1.13084 1.52529 1.18838 1.19510 0.84627 0.81490 0.86844 1.90756 1.49352 1.59071 1.41340 1.21034 0.81531 0.78601 0.89639 1.90780 1.48601 1.55793 1.41534 1.43125 1.16746 1.51598 1.18101 1.17530 0.92192 0.97986 0.90698 1.21315 1.00939 0.90857 0.92562 1.18871 0.92661 1.03244 0.97242 1.20616 0.87566 0.76101 0.78585 1.90970 1.22067 1.58548 1.67209 1.84515 1.45818 1.64013 1.38173 1.21300 0.90419 0.96050 0.99167 1.20982 1.01618 0.99644 0.94240 1.17768 0.84043 0.96905 0.92470 1.91547 1.60494 1.79342 1.79021 0.92676 0.94491 0.93410 0.91663 0.92317 0.91925 0.75790 0.73207 0.81612 0.72402 0.83095 0.83088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 8.55 37.16 0.32 -2.45 16 2 C -0.14 -2.96 5.18 -26.74 -0.14 -3.10 16 3 C 0.24 5.52 1.80 -69.08 -0.12 5.39 16 4 H 0.06 1.35 6.08 -51.93 -0.32 1.03 16 5 C -0.61 -16.33 9.10 -34.44 -0.31 -16.65 16 6 H 0.07 1.85 7.95 -52.49 -0.42 1.43 16 7 C 0.04 1.04 5.42 -17.82 -0.10 0.94 16 8 N -0.90 -26.64 13.70 55.43 0.76 -25.88 16 9 Si 1.05 24.61 25.35 -169.99 -4.31 20.30 16 10 H -0.28 -6.18 6.75 56.52 0.38 -5.80 16 11 H -0.27 -6.09 6.37 56.52 0.36 -5.73 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 13 N -0.66 -13.25 5.03 -55.40 -0.28 -13.53 16 14 C 0.50 9.10 6.54 -11.63 -0.08 9.03 16 15 O -0.53 -10.24 13.63 5.48 0.07 -10.16 16 16 C 0.51 8.08 7.65 -11.63 -0.09 7.99 16 17 O -0.49 -8.59 13.92 5.47 0.08 -8.51 16 18 N -0.65 -8.40 5.25 -10.28 -0.05 -8.45 16 19 C 0.11 1.32 6.35 -83.70 -0.53 0.78 16 20 C -0.04 -0.45 8.21 -38.97 -0.32 -0.77 16 21 C -0.12 -1.19 5.87 -105.00 -0.62 -1.81 16 22 C 0.53 5.48 8.27 34.56 0.29 5.76 16 23 O -0.50 -7.11 17.13 -19.26 -0.33 -7.44 16 24 O -0.51 -3.28 12.67 -40.55 -0.51 -3.79 16 25 C -0.05 -0.36 9.61 -39.15 -0.38 -0.73 16 26 C -0.15 -1.02 10.00 -39.61 -0.40 -1.42 16 27 C 0.11 1.06 7.31 -39.09 -0.29 0.77 16 28 F -0.13 -1.25 16.87 2.25 0.04 -1.21 16 29 H 0.05 1.06 7.95 -51.93 -0.41 0.65 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.88 5.61 -51.93 -0.29 0.59 16 32 H 0.07 1.43 4.39 -51.93 -0.23 1.21 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.27 7.95 8.72 -40.82 -0.36 7.60 16 35 H 0.41 7.91 8.00 -40.82 -0.33 7.58 16 36 H 0.43 5.00 8.03 -40.82 -0.33 4.67 16 37 H 0.17 2.46 5.73 -52.49 -0.30 2.16 16 38 H 0.42 0.94 9.11 45.56 0.42 1.35 16 39 H 0.15 0.69 7.60 -52.49 -0.40 0.29 16 40 H 0.15 0.63 8.06 -52.49 -0.42 0.21 16 LS Contribution 347.14 15.07 5.23 5.23 Total: -1.00 -32.66 347.14 -5.15 -37.81 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -3.08 Total: 11.89 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: -2.76 Total: 3.75 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: 0.43 Total: -47.86 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -0.69 Total: -29.91 kcal Atomic # 9 Polarization: -1.25 SS G_CDS: 0.04 Total: -1.21 kcal Atomic # 14 Polarization: 24.61 SS G_CDS: -4.31 Total: 20.30 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.66 -5.15 -37.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604981898.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.507 kcal (2) G-P(sol) polarization free energy of solvation -32.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds