Wall clock time and date at job start Tue Mar 31 2020 21:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47817 * 2 1 4 4 H 1.09000 * 109.46931 * 306.75866 * 3 2 1 5 5 C 1.50702 * 109.47516 * 186.75420 * 3 2 1 6 6 H 1.08001 * 120.00102 * 244.98830 * 5 3 2 7 7 C 1.37872 * 119.99608 * 64.99046 * 5 3 2 8 8 N 1.31517 * 120.00068 * 186.04388 * 7 5 3 9 9 Si 1.86799 * 120.00309 * 6.04579 * 7 5 3 10 10 H 1.48499 * 109.47131 * 269.99962 * 9 7 5 11 11 H 1.48503 * 109.47062 * 29.99857 * 9 7 5 12 12 H 1.48505 * 109.47006 * 149.99850 * 9 7 5 13 13 N 1.46501 * 109.47031 * 66.75567 * 3 2 1 14 14 C 1.34780 * 119.99985 * 275.00212 * 13 3 2 15 15 O 1.21367 * 119.99912 * 359.97438 * 14 13 3 16 16 C 1.49346 * 120.00089 * 179.97438 * 14 13 3 17 17 O 1.21381 * 119.99947 * 0.02562 * 16 14 13 18 18 N 1.34780 * 120.00089 * 180.02562 * 16 14 13 19 19 C 1.39858 * 120.00072 * 184.97249 * 18 16 14 20 20 C 1.38515 * 120.00810 * 29.93768 * 19 18 16 21 21 C 1.39609 * 119.79199 * 179.79083 * 20 19 18 22 22 C 1.47610 * 120.09513 * 180.20856 * 21 20 19 23 23 O 1.21491 * 119.99550 * 0.27263 * 22 21 20 24 24 O 1.34723 * 120.00335 * 180.27758 * 22 21 20 25 25 C 1.39734 * 119.81627 * 0.48413 * 21 20 19 26 26 C 1.37890 * 120.01886 * 359.76888 * 25 21 20 27 27 C 1.38507 * 120.20980 * 359.97438 * 26 25 21 28 28 F 1.35100 * 119.90884 * 180.02562 * 27 26 25 29 29 H 1.09000 * 109.47010 * 59.99690 * 1 2 3 30 30 H 1.08996 * 109.47654 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46814 * 300.00148 * 1 2 3 32 32 H 1.09003 * 109.46814 * 239.99852 * 2 1 3 33 33 H 1.08995 * 109.47014 * 120.00809 * 2 1 3 34 34 H 0.97004 * 119.99873 * 354.97730 * 8 7 5 35 35 H 0.96997 * 120.00189 * 94.99761 * 13 3 2 36 36 H 0.96999 * 119.99803 * 4.97311 * 18 16 14 37 37 H 1.07997 * 120.10625 * 0.02562 * 20 19 18 38 38 H 0.96707 * 117.00111 * 180.02562 * 24 22 21 39 39 H 1.07995 * 119.98852 * 179.74265 * 25 21 20 40 40 H 1.07999 * 119.89521 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5814 1.9899 -0.8233 5 6 3.5378 1.4456 -0.1671 6 1 4.1694 1.8086 0.6302 7 6 4.1017 0.9851 -1.3379 8 7 5.4084 0.8760 -1.4400 9 14 3.0100 0.5160 -2.7792 10 1 2.6487 -0.9209 -2.6795 11 1 1.7747 1.3399 -2.7532 12 1 3.7385 0.7562 -4.0508 13 7 1.6890 2.0845 1.2691 14 6 0.4757 2.6501 1.4252 15 8 -0.3259 2.6279 0.5142 16 6 0.1175 3.3042 2.7191 17 8 0.9194 3.3269 3.6301 18 7 -1.0960 3.8694 2.8754 19 6 -1.3946 4.5720 4.0472 20 6 -0.3873 5.2225 4.7407 21 6 -0.6912 5.9261 5.9076 22 6 0.3762 6.6256 6.6493 23 8 1.5203 6.5936 6.2417 24 8 0.0819 7.2994 7.7782 25 6 -2.0077 5.9616 6.3746 26 6 -3.0036 5.3068 5.6811 27 6 -2.7041 4.6129 4.5204 28 9 -3.6846 3.9741 3.8455 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 5.9788 1.1874 -0.7199 35 1 2.3297 2.1025 1.9971 36 1 -1.7623 3.7889 2.1750 37 1 0.6293 5.1887 4.3777 38 1 0.8141 7.7420 8.2289 39 1 -2.2451 6.5015 7.2793 40 1 -4.0203 5.3352 6.0442 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604981898.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:13 Heat of formation + Delta-G solvation = -200.017386 kcal Electronic energy + Delta-G solvation = -28780.774355 eV Core-core repulsion = 24281.323676 eV Total energy + Delta-G solvation = -4499.450679 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.116 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.19457 -42.35579 -41.42706 -40.42584 -39.22134 -37.43834 -37.15028 -36.27517 -34.52807 -33.26768 -32.19732 -31.30784 -29.39913 -26.60025 -25.89080 -24.44289 -23.85521 -22.54428 -22.09806 -21.41349 -20.49173 -19.64108 -19.26190 -18.78553 -18.49617 -17.93226 -17.62643 -17.35635 -17.09759 -16.81056 -16.65758 -16.46667 -15.78705 -15.55948 -15.21934 -15.03694 -14.94148 -14.56248 -14.53252 -14.38435 -14.11947 -13.85356 -13.75234 -13.63522 -13.14733 -12.76419 -12.66490 -12.59460 -12.47516 -12.30200 -11.97505 -11.83288 -11.72291 -11.51614 -11.02514 -10.80834 -10.72328 -10.18381 -10.08799 -9.55201 -8.84313 -6.53448 -0.72771 -0.27181 0.34082 1.04283 1.29083 1.42040 1.51892 1.68351 1.88426 1.97790 2.39590 2.43240 2.48661 2.81660 2.99366 3.27626 3.49548 3.80527 3.86545 3.90619 4.22447 4.23942 4.31923 4.42527 4.66995 4.68851 4.75422 4.90146 4.94617 5.01863 5.04425 5.08849 5.18531 5.30612 5.46827 5.49985 5.52622 5.53253 5.68214 5.93153 6.28338 6.42416 6.53779 6.88567 6.89452 7.26022 8.55844 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.016698 B = 0.002844 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.464202 B = 9844.142564 C =11226.470714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.138 4.138 3 C 0.245 3.755 4 H 0.043 0.957 5 C -0.613 4.613 6 H 0.035 0.965 7 C -0.010 4.010 8 N -0.932 5.932 9 Si 1.081 2.919 10 H -0.254 1.254 11 H -0.255 1.255 12 H -0.288 1.288 13 N -0.668 5.668 14 C 0.501 3.499 15 O -0.534 6.534 16 C 0.516 3.484 17 O -0.515 6.515 18 N -0.634 5.634 19 C 0.086 3.914 20 C -0.056 4.056 21 C -0.131 4.131 22 C 0.534 3.466 23 O -0.551 6.551 24 O -0.493 6.493 25 C -0.023 4.023 26 C -0.127 4.127 27 C 0.115 3.885 28 F -0.126 7.126 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.256 0.744 35 H 0.408 0.592 36 H 0.435 0.565 37 H 0.132 0.868 38 H 0.436 0.564 39 H 0.189 0.811 40 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.009 11.030 18.155 30.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.176 4.176 3 C 0.141 3.859 4 H 0.061 0.939 5 C -0.651 4.651 6 H 0.054 0.946 7 C -0.209 4.209 8 N -0.567 5.567 9 Si 0.903 3.097 10 H -0.179 1.179 11 H -0.180 1.180 12 H -0.214 1.214 13 N -0.317 5.317 14 C 0.281 3.719 15 O -0.413 6.413 16 C 0.298 3.702 17 O -0.389 6.389 18 N -0.282 5.282 19 C -0.009 4.009 20 C -0.077 4.077 21 C -0.132 4.132 22 C 0.380 3.620 23 O -0.443 6.443 24 O -0.307 6.307 25 C -0.042 4.042 26 C -0.145 4.145 27 C 0.093 3.907 28 F -0.105 7.105 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.243 0.757 36 H 0.275 0.725 37 H 0.150 0.850 38 H 0.299 0.701 39 H 0.206 0.794 40 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -21.961 10.138 16.246 29.138 hybrid contribution 1.510 0.731 1.536 2.274 sum -20.452 10.869 17.781 29.199 Atomic orbital electron populations 1.21826 0.94762 1.01246 1.01764 1.22196 0.96097 0.97578 1.01776 1.19213 0.94215 0.90431 0.82015 0.93929 1.22340 0.91422 1.47844 1.03458 0.94625 1.27024 0.98078 0.93374 1.02443 1.70934 1.04653 1.44488 1.36660 0.83568 0.74410 0.78798 0.72905 1.17880 1.17995 1.21432 1.46051 1.14157 1.53467 1.18013 1.19801 0.83693 0.80701 0.87733 1.90737 1.49412 1.59138 1.42015 1.20397 0.82505 0.78974 0.88287 1.90789 1.49482 1.56893 1.41775 1.42914 1.15520 1.50753 1.18973 1.17633 0.93339 0.99217 0.90671 1.21086 0.99700 0.92739 0.94135 1.18971 0.94167 1.03391 0.96718 1.20715 0.86799 0.75560 0.78956 1.90960 1.24065 1.60546 1.68705 1.84459 1.46592 1.63165 1.36519 1.21701 0.88564 0.94431 0.99488 1.21445 1.03416 0.97332 0.92357 1.17920 0.82856 0.96833 0.93054 1.91553 1.60231 1.79433 1.79240 0.93054 0.91716 0.93460 0.92144 0.92216 0.93424 0.75697 0.72515 0.85022 0.70112 0.79418 0.79001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.91 8.55 71.98 0.62 -4.30 16 2 C -0.14 -5.73 5.18 30.59 0.16 -5.57 16 3 C 0.24 11.39 1.80 44.24 0.08 11.47 16 4 H 0.04 2.10 6.08 -2.39 -0.01 2.09 16 5 C -0.61 -33.69 9.10 25.60 0.23 -33.46 16 6 H 0.04 2.12 7.95 -2.91 -0.02 2.10 16 7 C -0.01 -0.54 5.42 84.65 0.46 -0.08 16 8 N -0.93 -57.06 13.70 21.45 0.29 -56.76 16 9 Si 1.08 49.31 25.35 68.60 1.74 51.05 16 10 H -0.25 -10.51 6.75 99.48 0.67 -9.84 16 11 H -0.26 -10.86 6.37 99.48 0.63 -10.22 16 12 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 13 N -0.67 -27.56 5.03 -447.53 -2.25 -29.81 16 14 C 0.50 18.53 6.54 87.24 0.57 19.10 16 15 O -0.53 -20.51 13.63 -3.30 -0.04 -20.55 16 16 C 0.52 16.74 7.65 87.24 0.67 17.41 16 17 O -0.51 -18.70 13.92 -3.34 -0.05 -18.75 16 18 N -0.63 -16.32 5.25 -304.77 -1.60 -17.92 16 19 C 0.09 1.96 6.35 38.18 0.24 2.20 16 20 C -0.06 -1.40 8.21 22.67 0.19 -1.22 16 21 C -0.13 -2.43 5.87 -20.11 -0.12 -2.55 16 22 C 0.53 10.59 8.27 70.30 0.58 11.17 16 23 O -0.55 -16.22 17.13 19.87 0.34 -15.88 16 24 O -0.49 -4.95 12.67 -56.33 -0.71 -5.66 16 25 C -0.02 -0.23 9.61 22.55 0.22 -0.02 16 26 C -0.13 -1.18 10.00 22.25 0.22 -0.95 16 27 C 0.12 1.89 7.31 22.59 0.17 2.05 16 28 F -0.13 -2.14 16.87 44.97 0.76 -1.39 16 29 H 0.05 1.85 7.95 -2.39 -0.02 1.83 16 30 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.05 1.66 5.61 -2.39 -0.01 1.65 16 32 H 0.06 2.56 4.39 -2.39 -0.01 2.55 16 33 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.26 15.89 8.72 -92.71 -0.81 15.08 16 35 H 0.41 16.64 8.00 -92.71 -0.74 15.90 16 36 H 0.43 9.83 8.03 -92.71 -0.74 9.09 16 37 H 0.13 4.24 5.73 -2.91 -0.02 4.22 16 38 H 0.44 0.89 9.11 -74.05 -0.67 0.21 16 39 H 0.19 0.56 7.60 -2.91 -0.02 0.53 16 40 H 0.19 0.32 8.06 -2.91 -0.02 0.30 16 Total: -1.00 -74.66 347.14 1.62 -73.04 By element: Atomic # 1 Polarization: 28.50 SS G_CDS: -1.14 Total: 27.36 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: 4.28 Total: 15.26 kcal Atomic # 7 Polarization: -100.94 SS G_CDS: -3.56 Total: -104.49 kcal Atomic # 8 Polarization: -60.38 SS G_CDS: -0.46 Total: -60.84 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.76 Total: -1.39 kcal Atomic # 14 Polarization: 49.31 SS G_CDS: 1.74 Total: 51.05 kcal Total: -74.66 1.62 -73.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604981898.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.977 kcal (2) G-P(sol) polarization free energy of solvation -74.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds