Wall clock time and date at job start Tue Mar 31 2020 20:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 S 1.70931 * 125.59255 * 2 1 4 4 C 1.70768 * 91.14202 * 179.97438 * 3 2 1 5 5 C 1.50696 * 124.70913 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.87841 * 346.02076 * 5 4 3 7 7 C 1.54333 * 109.87890 * 107.19420 * 5 4 3 8 8 C 1.55152 * 102.93859 * 141.60802 * 7 5 4 9 9 C 1.55124 * 101.49070 * 324.33216 * 8 7 5 10 10 N 1.47023 * 109.88251 * 224.99858 * 5 4 3 11 11 C 1.34771 * 125.64666 * 61.61415 * 10 5 4 12 12 O 1.21284 * 120.00162 * 5.00859 * 11 10 5 13 13 C 1.50698 * 120.00251 * 185.01773 * 11 10 5 14 14 H 1.09004 * 109.46889 * 20.45513 * 13 11 10 15 15 C 1.53008 * 109.46867 * 260.45848 * 13 11 10 16 16 C 1.50699 * 109.47469 * 140.45683 * 13 11 10 17 17 H 1.07992 * 120.00055 * 5.34173 * 16 13 11 18 18 C 1.37880 * 119.99817 * 185.34160 * 16 13 11 19 19 N 1.31511 * 120.00383 * 10.20312 * 18 16 13 20 20 Si 1.86796 * 119.99639 * 190.20996 * 18 16 13 21 21 H 1.48501 * 109.47018 * 180.02562 * 20 18 16 22 22 H 1.48500 * 109.46977 * 299.99168 * 20 18 16 23 23 H 1.48500 * 109.47762 * 59.99595 * 20 18 16 24 24 N 1.28625 * 110.57826 * 0.26729 * 4 3 2 25 25 C 1.33610 * 115.77030 * 359.51891 * 24 4 3 26 26 C 1.47108 * 123.15515 * 180.21632 * 25 24 4 27 27 O 1.21555 * 120.00172 * 180.30644 * 26 25 24 28 28 O 1.34803 * 120.00042 * 0.30797 * 26 25 24 29 29 H 1.09005 * 109.47310 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47733 * 120.02281 * 1 2 3 31 31 H 1.08999 * 109.47094 * 240.02434 * 1 2 3 32 32 H 1.08994 * 110.72012 * 259.97130 * 7 5 4 33 33 H 1.09002 * 110.71813 * 23.06722 * 7 5 4 34 34 H 1.08997 * 111.00440 * 82.57968 * 8 7 5 35 35 H 1.09001 * 111.00233 * 206.42396 * 8 7 5 36 36 H 1.09000 * 110.50022 * 278.45574 * 9 8 7 37 37 H 1.09001 * 110.34504 * 156.06294 * 9 8 7 38 38 H 1.08990 * 109.47209 * 307.03061 * 15 13 11 39 39 H 1.09000 * 109.46800 * 67.03192 * 15 13 11 40 40 H 1.09006 * 109.46798 * 187.02667 * 15 13 11 41 41 H 0.97004 * 120.00126 * 356.09771 * 19 18 16 42 42 H 0.96701 * 116.99996 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5018 1.3900 0.0000 4 6 3.9100 0.4239 0.0008 5 6 5.3184 0.9601 0.0006 6 1 5.3109 2.0214 -0.2477 7 6 5.9613 0.7467 1.3873 8 6 7.4245 0.3677 1.0372 9 6 7.2276 -0.4581 -0.2612 10 7 6.1336 0.2236 -0.9765 11 6 5.9138 0.1752 -2.3053 12 8 5.0316 0.8453 -2.7988 13 6 6.7640 -0.7117 -3.1779 14 1 7.2320 -1.4827 -2.5657 15 6 7.8479 0.1285 -3.8565 16 6 5.8998 -1.3602 -4.2284 17 1 4.8590 -1.0860 -4.3161 18 6 6.4381 -2.3037 -5.0777 19 7 7.6402 -2.7851 -4.8486 20 14 5.4597 -2.8978 -6.5539 21 1 6.2547 -3.9048 -7.3018 22 1 4.1906 -3.5144 -6.0909 23 1 5.1559 -1.7472 -7.4422 24 7 3.6016 -0.8248 -0.0046 25 6 2.2942 -1.1003 0.0005 26 6 1.7609 -2.4713 0.0003 27 8 0.5595 -2.6561 -0.0005 28 8 2.6046 -3.5227 0.0009 29 1 -0.3634 1.0277 -0.0005 30 1 -0.3634 -0.5142 -0.8898 31 1 -0.3633 -0.5134 0.8902 32 1 5.9304 1.6658 1.9722 33 1 5.4668 -0.0651 1.9208 34 1 8.0248 1.2581 0.8507 35 1 7.8685 -0.2433 1.8231 36 1 6.9439 -1.4831 -0.0223 37 1 8.1383 -0.4455 -0.8601 38 1 7.3861 0.9736 -4.3668 39 1 8.5467 0.4956 -3.1048 40 1 8.3830 -0.4854 -4.5810 41 1 8.1709 -2.4360 -4.1155 42 1 2.2073 -4.4043 0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608065856.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:32 Heat of formation + Delta-G solvation = -88.060200 kcal Electronic energy + Delta-G solvation = -27987.596188 eV Core-core repulsion = 24059.213513 eV Total energy + Delta-G solvation = -3928.382675 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.76091 -39.81063 -38.69294 -36.97314 -36.08640 -34.14072 -32.93543 -31.41957 -30.28910 -29.63632 -27.37249 -25.04529 -24.71053 -24.22039 -22.90055 -21.77110 -20.84822 -19.80486 -18.96111 -18.20003 -17.48822 -16.77776 -16.42911 -16.27969 -15.97569 -15.89277 -14.87873 -14.40906 -13.85113 -13.73015 -13.65599 -13.63302 -13.41328 -13.17364 -12.97247 -12.89161 -12.71565 -12.57947 -12.14709 -11.82363 -11.60958 -11.48813 -11.35465 -11.18219 -11.04832 -10.96089 -10.87384 -10.64655 -10.63826 -10.29931 -10.05599 -9.71746 -9.40275 -9.00907 -8.75957 -8.52715 -8.24915 -8.22309 -6.37150 -4.05437 0.39379 1.11154 1.52850 1.78473 3.06467 3.17757 3.46195 3.48545 3.54410 3.59117 3.68485 4.03615 4.51016 4.56004 4.62883 4.67947 4.77618 4.95121 5.14082 5.21461 5.36293 5.43586 5.44524 5.57121 5.64493 5.74729 5.77998 5.85913 5.91717 5.92641 6.00298 6.23882 6.37316 6.42352 6.59748 6.69190 6.70355 7.12179 7.39243 7.48572 7.93947 7.97514 8.21592 8.50905 8.86451 9.07893 9.61651 11.01202 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.009604 B = 0.005088 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2914.675507 B = 5502.111637 C = 7026.708608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.187 4.187 3 S 0.226 5.774 4 C 0.028 3.972 5 C 0.214 3.786 6 H 0.091 0.909 7 C -0.119 4.119 8 C -0.129 4.129 9 C 0.106 3.894 10 N -0.614 5.614 11 C 0.552 3.448 12 O -0.543 6.543 13 C 0.025 3.975 14 H 0.038 0.962 15 C -0.133 4.133 16 C -0.579 4.579 17 H 0.057 0.943 18 C 0.024 3.976 19 N -0.909 5.909 20 Si 1.068 2.932 21 H -0.282 1.282 22 H -0.289 1.289 23 H -0.286 1.286 24 N -0.401 5.401 25 C 0.011 3.989 26 C 0.569 3.431 27 O -0.514 6.514 28 O -0.489 6.489 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.044 0.956 39 H 0.021 0.979 40 H 0.068 0.932 41 H 0.269 0.731 42 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.974 7.318 16.611 19.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.311 4.311 3 S 0.486 5.514 4 C -0.254 4.254 5 C 0.106 3.894 6 H 0.109 0.891 7 C -0.158 4.158 8 C -0.168 4.168 9 C -0.017 4.017 10 N -0.351 5.351 11 C 0.344 3.656 12 O -0.418 6.418 13 C 0.004 3.996 14 H 0.056 0.944 15 C -0.192 4.192 16 C -0.618 4.618 17 H 0.075 0.925 18 C -0.180 4.180 19 N -0.545 5.545 20 Si 0.896 3.104 21 H -0.207 1.207 22 H -0.215 1.215 23 H -0.213 1.213 24 N -0.114 5.114 25 C -0.122 4.122 26 C 0.411 3.589 27 O -0.403 6.403 28 O -0.299 6.299 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.063 0.937 39 H 0.040 0.960 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -6.313 7.608 14.916 17.895 hybrid contribution -0.642 -0.558 1.185 1.459 sum -6.955 7.050 16.101 18.903 Atomic orbital electron populations 1.20345 0.85460 1.02639 1.04648 1.25583 1.03394 0.96604 1.05552 1.82691 0.96297 1.08536 1.63880 1.27447 1.01443 0.91775 1.04783 1.20009 0.82733 0.95776 0.90918 0.89093 1.22687 0.96149 1.02937 0.94062 1.22823 0.95776 1.00627 0.97530 1.22296 0.90518 0.96516 0.92389 1.48825 1.29037 1.51423 1.05799 1.21475 0.84051 0.80902 0.79168 1.90535 1.34044 1.44328 1.72919 1.18940 0.93912 0.92543 0.94193 0.94408 1.21790 0.97662 0.99831 0.99877 1.21713 0.97619 1.25549 1.16871 0.92515 1.25757 0.97729 0.93712 1.00832 1.70829 1.11409 1.40100 1.32154 0.83554 0.74996 0.76284 0.75563 1.20703 1.21542 1.21275 1.66845 1.14985 1.17632 1.11948 1.19073 0.88427 0.91998 1.12742 1.19482 0.83391 0.84343 0.71675 1.90886 1.15928 1.86202 1.47318 1.84747 1.42345 1.17896 1.84880 0.91166 0.89269 0.89434 0.89722 0.89916 0.90402 0.89659 0.91125 0.90154 0.93692 0.96010 0.91356 0.92002 0.73064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 8.81 36.00 0.32 -0.51 16 2 C -0.19 -2.72 6.40 -35.36 -0.23 -2.95 16 3 S 0.23 3.00 22.88 -107.50 -2.46 0.54 16 4 C 0.03 0.45 5.41 -13.62 -0.07 0.38 16 5 C 0.21 3.21 3.32 -68.10 -0.23 2.98 16 6 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 7 C -0.12 -1.27 6.46 -24.89 -0.16 -1.43 16 8 C -0.13 -1.33 7.10 -24.47 -0.17 -1.50 16 9 C 0.11 1.58 6.16 -2.41 -0.01 1.57 16 10 N -0.61 -11.37 3.02 -164.19 -0.50 -11.87 16 11 C 0.55 13.06 6.52 -10.99 -0.07 12.99 16 12 O -0.54 -14.35 16.20 5.55 0.09 -14.26 16 13 C 0.03 0.65 1.79 -92.92 -0.17 0.48 16 14 H 0.04 0.98 6.25 -51.93 -0.32 0.65 16 15 C -0.13 -3.12 8.88 37.16 0.33 -2.79 16 16 C -0.58 -17.05 8.27 -34.44 -0.28 -17.33 16 17 H 0.06 1.79 7.33 -52.49 -0.38 1.41 16 18 C 0.02 0.68 5.12 -17.82 -0.09 0.59 16 19 N -0.91 -26.85 13.04 55.43 0.72 -26.13 16 20 Si 1.07 26.24 29.92 -169.99 -5.09 21.16 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 N -0.40 -7.43 10.55 -8.53 -0.09 -7.52 16 25 C 0.01 0.20 6.71 -84.54 -0.57 -0.37 16 26 C 0.57 9.44 8.31 34.33 0.29 9.73 16 27 O -0.51 -8.52 15.49 -19.31 -0.30 -8.82 16 28 O -0.49 -7.40 13.37 -40.77 -0.55 -7.95 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 1.11 7.81 -51.93 -0.41 0.70 16 31 H 0.09 0.95 7.81 -51.93 -0.41 0.54 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.93 7.84 -51.93 -0.41 0.52 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.08 1.19 7.58 -51.93 -0.39 0.80 16 38 H 0.04 1.06 8.13 -51.93 -0.42 0.64 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 1.70 6.41 -51.93 -0.33 1.37 16 41 H 0.27 7.76 6.12 -40.82 -0.25 7.51 16 42 H 0.41 3.87 9.11 45.56 0.42 4.28 16 LS Contribution 366.46 15.07 5.52 5.52 Total: -1.00 -37.40 366.46 -8.43 -45.83 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -4.67 Total: 1.64 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -1.12 Total: 1.85 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: 0.14 Total: -45.52 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -0.75 Total: -31.02 kcal Atomic # 14 Polarization: 26.24 SS G_CDS: -5.09 Total: 21.16 kcal Atomic # 16 Polarization: 3.00 SS G_CDS: -2.46 Total: 0.54 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -37.40 -8.43 -45.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608065856.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.229 kcal (2) G-P(sol) polarization free energy of solvation -37.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds