Wall clock time and date at job start Tue Mar 31 2020 20:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 S 1.70939 * 125.58789 * 2 1 4 4 C 1.70775 * 91.13716 * 179.97438 * 3 2 1 5 5 C 1.50695 * 124.70770 * 180.02562 * 4 3 2 6 6 H 1.09007 * 110.00103 * 346.09160 * 5 4 3 7 7 C 1.54316 * 109.77597 * 107.24557 * 5 4 3 8 8 C 1.55161 * 102.86300 * 141.88189 * 7 5 4 9 9 C 1.54906 * 101.58222 * 324.30966 * 8 7 5 10 10 N 1.47017 * 109.88232 * 224.99628 * 5 4 3 11 11 C 1.34786 * 125.64653 * 61.67754 * 10 5 4 12 12 O 1.21273 * 119.99807 * 359.71960 * 11 10 5 13 13 C 1.50698 * 119.99672 * 179.71650 * 11 10 5 14 14 H 1.09001 * 109.47612 * 300.00458 * 13 11 10 15 15 C 1.53006 * 109.47184 * 60.00403 * 13 11 10 16 16 C 1.50699 * 109.46911 * 179.97438 * 13 11 10 17 17 H 1.07999 * 120.00019 * 0.02562 * 16 13 11 18 18 C 1.37879 * 119.99908 * 180.02562 * 16 13 11 19 19 N 1.31516 * 119.99546 * 180.02562 * 18 16 13 20 20 Si 1.86797 * 120.00061 * 359.97438 * 18 16 13 21 21 H 1.48496 * 109.47023 * 90.00536 * 20 18 16 22 22 H 1.48503 * 109.47041 * 210.00292 * 20 18 16 23 23 H 1.48500 * 109.47388 * 329.99951 * 20 18 16 24 24 N 1.28621 * 110.58062 * 0.26154 * 4 3 2 25 25 C 1.33603 * 115.77256 * 359.52234 * 24 4 3 26 26 C 1.47104 * 123.15962 * 180.21358 * 25 24 4 27 27 O 1.21556 * 120.00601 * 180.30698 * 26 25 24 28 28 O 1.34797 * 119.99942 * 0.31327 * 26 25 24 29 29 H 1.08996 * 109.47588 * 0.03065 * 1 2 3 30 30 H 1.09004 * 109.46802 * 120.02876 * 1 2 3 31 31 H 1.09001 * 109.47456 * 240.02789 * 1 2 3 32 32 H 1.08998 * 110.92234 * 23.47036 * 7 5 4 33 33 H 1.08995 * 110.74439 * 260.21320 * 7 5 4 34 34 H 1.08995 * 111.00259 * 206.22966 * 8 7 5 35 35 H 1.08997 * 111.03300 * 82.39419 * 8 7 5 36 36 H 1.09002 * 110.36692 * 278.16919 * 9 8 7 37 37 H 1.08996 * 110.37071 * 155.84909 * 9 8 7 38 38 H 1.09001 * 109.47002 * 299.99404 * 15 13 11 39 39 H 1.08993 * 109.46955 * 59.99842 * 15 13 11 40 40 H 1.09000 * 109.47050 * 179.97438 * 15 13 11 41 41 H 0.97005 * 119.99945 * 180.02562 * 19 18 16 42 42 H 0.96701 * 117.00345 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5018 1.3901 0.0000 4 6 3.9100 0.4240 0.0008 5 6 5.3184 0.9602 0.0017 6 1 5.3132 2.0221 -0.2444 7 6 5.9586 0.7435 1.3889 8 6 7.4238 0.3716 1.0388 9 6 7.2343 -0.4487 -0.2615 10 7 6.1341 0.2245 -0.9754 11 6 5.9156 0.1780 -2.3046 12 8 4.9752 0.7737 -2.7858 13 6 6.8400 -0.6142 -3.1928 14 1 7.8529 -0.2209 -3.1060 15 6 6.8248 -2.0829 -2.7641 16 6 6.3788 -0.5042 -4.6233 17 1 5.5040 0.0811 -4.8650 18 6 7.0736 -1.1509 -5.6233 19 7 6.6712 -1.0545 -6.8717 20 14 8.5870 -2.1628 -5.2052 21 1 8.1832 -3.5633 -4.9215 22 1 9.5289 -2.1421 -6.3531 23 1 9.2523 -1.5873 -4.0088 24 7 3.6017 -0.8246 -0.0045 25 6 2.2944 -1.1002 0.0007 26 6 1.7611 -2.4712 0.0005 27 8 0.5597 -2.6561 -0.0002 28 8 2.6047 -3.5225 0.0012 29 1 -0.3634 1.0276 -0.0005 30 1 -0.3633 -0.5143 -0.8898 31 1 -0.3634 -0.5134 0.8902 32 1 5.4698 -0.0734 1.9199 33 1 5.9235 1.6600 1.9778 34 1 7.8703 -0.2383 1.8241 35 1 8.0205 1.2647 0.8538 36 1 6.9599 -1.4768 -0.0248 37 1 8.1448 -0.4265 -0.8602 38 1 7.1582 -2.1629 -1.7295 39 1 5.8120 -2.4762 -2.8510 40 1 7.4931 -2.6560 -3.4069 41 1 7.1598 -1.5097 -7.5753 42 1 2.2075 -4.4042 0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608065860.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:41 Heat of formation + Delta-G solvation = -71.220570 kcal Electronic energy + Delta-G solvation = -28027.277083 eV Core-core repulsion = 24099.624629 eV Total energy + Delta-G solvation = -3927.652454 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.81231 -39.90154 -38.75322 -36.97425 -36.15707 -33.93782 -32.93252 -31.73943 -30.69973 -29.90700 -27.42332 -25.16372 -24.74284 -24.41278 -23.04170 -21.70863 -20.94988 -19.85087 -18.97535 -18.13554 -17.53111 -16.85703 -16.34765 -16.04267 -15.95748 -15.84364 -15.27371 -14.61647 -14.35278 -13.91765 -13.67229 -13.61756 -13.42319 -13.21982 -13.03062 -12.96226 -12.85632 -12.53134 -12.32943 -11.96121 -11.80253 -11.62933 -11.56284 -11.47862 -11.13506 -10.94617 -10.87143 -10.68675 -10.54515 -10.25673 -9.76328 -9.57659 -9.42171 -9.06509 -9.03798 -8.64639 -8.54972 -8.27524 -6.02812 -4.02704 0.37028 1.09120 1.50917 1.73769 3.01095 3.11900 3.26041 3.32087 3.37939 3.48820 3.52500 3.99638 4.40139 4.47349 4.58775 4.65190 4.74017 4.92214 5.09719 5.18021 5.27089 5.39219 5.42139 5.54986 5.60279 5.66846 5.73000 5.80965 5.84278 5.86353 5.94090 6.14779 6.23660 6.35369 6.36584 6.47171 6.66400 6.82189 7.23763 7.43247 7.57258 7.90677 8.05356 8.55763 9.04656 9.16077 9.56152 11.10195 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.011667 B = 0.004417 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.395512 B = 6337.040828 C = 7114.502618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.186 4.186 3 S 0.232 5.768 4 C 0.029 3.971 5 C 0.215 3.785 6 H 0.093 0.907 7 C -0.119 4.119 8 C -0.132 4.132 9 C 0.103 3.897 10 N -0.615 5.615 11 C 0.549 3.451 12 O -0.525 6.525 13 C 0.004 3.996 14 H 0.051 0.949 15 C -0.148 4.148 16 C -0.504 4.504 17 H 0.092 0.908 18 C 0.070 3.930 19 N -0.897 5.897 20 Si 0.885 3.115 21 H -0.278 1.278 22 H -0.296 1.296 23 H -0.267 1.267 24 N -0.404 5.404 25 C 0.010 3.990 26 C 0.569 3.431 27 O -0.512 6.512 28 O -0.492 6.492 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.041 0.959 39 H 0.055 0.945 40 H 0.046 0.954 41 H 0.264 0.736 42 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.349 2.562 21.946 22.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.311 4.311 3 S 0.492 5.508 4 C -0.253 4.253 5 C 0.107 3.893 6 H 0.111 0.889 7 C -0.158 4.158 8 C -0.170 4.170 9 C -0.020 4.020 10 N -0.353 5.353 11 C 0.340 3.660 12 O -0.399 6.399 13 C -0.018 4.018 14 H 0.068 0.932 15 C -0.205 4.205 16 C -0.542 4.542 17 H 0.110 0.890 18 C -0.131 4.131 19 N -0.535 5.535 20 Si 0.715 3.285 21 H -0.205 1.205 22 H -0.224 1.224 23 H -0.192 1.192 24 N -0.118 5.118 25 C -0.124 4.124 26 C 0.411 3.589 27 O -0.402 6.402 28 O -0.302 6.302 29 H 0.089 0.911 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -4.736 3.838 21.328 22.182 hybrid contribution 0.252 -2.321 -0.103 2.337 sum -4.484 1.517 21.225 21.746 Atomic orbital electron populations 1.20351 0.85480 1.02713 1.04622 1.25595 1.03427 0.96670 1.05390 1.82757 0.96136 1.08361 1.63531 1.27412 1.01455 0.91819 1.04634 1.20016 0.82658 0.95871 0.90785 0.88903 1.22683 0.96075 1.02990 0.94074 1.22817 0.95875 1.00793 0.97490 1.22379 0.90555 0.96527 0.92527 1.48782 1.28721 1.51987 1.05769 1.21140 0.85807 0.79940 0.79068 1.90576 1.31295 1.44812 1.73213 1.19253 0.95094 0.91722 0.95720 0.93153 1.22201 1.01849 0.97792 0.98638 1.20924 1.14455 1.31724 0.87089 0.89028 1.24966 0.97055 0.96167 0.94905 1.69886 1.40194 1.43672 0.99722 0.86906 0.83355 0.80888 0.77351 1.20524 1.22360 1.19227 1.66822 1.14962 1.17696 1.12282 1.19037 0.88470 0.91892 1.13025 1.19491 0.83404 0.84303 0.71719 1.90895 1.15943 1.86165 1.47177 1.84726 1.42464 1.17921 1.85048 0.91119 0.89246 0.89463 0.89926 0.89673 0.89706 0.90322 0.90937 0.90057 0.94035 0.92547 0.93514 0.92606 0.73108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 8.81 36.01 0.32 -0.48 16 2 C -0.19 -2.57 6.40 -35.36 -0.23 -2.80 16 3 S 0.23 2.93 22.89 -107.50 -2.46 0.47 16 4 C 0.03 0.44 5.29 -13.63 -0.07 0.37 16 5 C 0.21 2.99 3.35 -68.11 -0.23 2.76 16 6 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 7 C -0.12 -1.14 6.46 -24.90 -0.16 -1.30 16 8 C -0.13 -1.20 7.08 -24.58 -0.17 -1.38 16 9 C 0.10 1.37 5.14 -2.53 -0.01 1.36 16 10 N -0.61 -10.54 3.02 -164.33 -0.50 -11.04 16 11 C 0.55 12.40 7.00 -10.98 -0.08 12.33 16 12 O -0.53 -13.69 15.29 5.56 0.09 -13.60 16 13 C 0.00 0.09 1.58 -92.92 -0.15 -0.06 16 14 H 0.05 1.17 6.90 -51.93 -0.36 0.81 16 15 C -0.15 -3.22 8.48 37.16 0.32 -2.90 16 16 C -0.50 -14.87 8.95 -34.44 -0.31 -15.18 16 17 H 0.09 3.08 7.00 -52.49 -0.37 2.72 16 18 C 0.07 2.07 5.45 -17.82 -0.10 1.98 16 19 N -0.90 -28.13 13.96 55.43 0.77 -27.35 16 20 Si 0.88 21.70 24.37 -169.99 -4.14 17.56 16 21 H -0.28 -6.66 6.87 56.52 0.39 -6.27 16 22 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.27 -6.04 6.53 56.52 0.37 -5.67 16 24 N -0.40 -6.90 10.55 -8.53 -0.09 -6.99 16 25 C 0.01 0.15 6.71 -84.55 -0.57 -0.41 16 26 C 0.57 8.73 8.31 34.33 0.29 9.02 16 27 O -0.51 -8.03 15.49 -19.31 -0.30 -8.32 16 28 O -0.49 -6.63 13.37 -40.76 -0.54 -7.17 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 1.07 7.81 -51.93 -0.41 0.66 16 31 H 0.09 0.90 7.81 -51.93 -0.41 0.49 16 32 H 0.08 0.83 7.85 -51.93 -0.41 0.43 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.97 7.08 -51.93 -0.37 0.61 16 37 H 0.08 1.07 7.36 -51.93 -0.38 0.69 16 38 H 0.04 0.74 5.00 -51.93 -0.26 0.48 16 39 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 40 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 41 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 42 H 0.41 3.24 9.11 45.56 0.42 3.66 16 LS Contribution 354.81 15.07 5.35 5.35 Total: -1.00 -37.99 354.81 -7.41 -45.40 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -4.43 Total: 2.41 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -1.15 Total: 3.30 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: 0.19 Total: -45.38 kcal Atomic # 8 Polarization: -28.34 SS G_CDS: -0.76 Total: -29.10 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.14 Total: 17.56 kcal Atomic # 16 Polarization: 2.93 SS G_CDS: -2.46 Total: 0.47 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -37.99 -7.41 -45.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608065860.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.824 kcal (2) G-P(sol) polarization free energy of solvation -37.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds