Wall clock time and date at job start Tue Mar 31 2020 20:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 S 1.70939 * 125.58789 * 2 1 4 4 C 1.70775 * 91.13716 * 179.97438 * 3 2 1 5 5 C 1.50695 * 124.70770 * 180.02562 * 4 3 2 6 6 H 1.09007 * 110.00103 * 346.09160 * 5 4 3 7 7 C 1.54316 * 109.77597 * 107.24557 * 5 4 3 8 8 C 1.55161 * 102.86300 * 141.88189 * 7 5 4 9 9 C 1.54906 * 101.58222 * 324.30966 * 8 7 5 10 10 N 1.47017 * 109.88232 * 224.99628 * 5 4 3 11 11 C 1.34786 * 125.64653 * 61.67754 * 10 5 4 12 12 O 1.21273 * 119.99807 * 359.71960 * 11 10 5 13 13 C 1.50698 * 119.99672 * 179.71650 * 11 10 5 14 14 H 1.09001 * 109.47612 * 300.00458 * 13 11 10 15 15 C 1.53006 * 109.47184 * 60.00403 * 13 11 10 16 16 C 1.50699 * 109.46911 * 179.97438 * 13 11 10 17 17 H 1.07999 * 120.00019 * 0.02562 * 16 13 11 18 18 C 1.37879 * 119.99908 * 180.02562 * 16 13 11 19 19 N 1.31516 * 119.99546 * 180.02562 * 18 16 13 20 20 Si 1.86797 * 120.00061 * 359.97438 * 18 16 13 21 21 H 1.48496 * 109.47023 * 90.00536 * 20 18 16 22 22 H 1.48503 * 109.47041 * 210.00292 * 20 18 16 23 23 H 1.48500 * 109.47388 * 329.99951 * 20 18 16 24 24 N 1.28621 * 110.58062 * 0.26154 * 4 3 2 25 25 C 1.33603 * 115.77256 * 359.52234 * 24 4 3 26 26 C 1.47104 * 123.15962 * 180.21358 * 25 24 4 27 27 O 1.21556 * 120.00601 * 180.30698 * 26 25 24 28 28 O 1.34797 * 119.99942 * 0.31327 * 26 25 24 29 29 H 1.08996 * 109.47588 * 0.03065 * 1 2 3 30 30 H 1.09004 * 109.46802 * 120.02876 * 1 2 3 31 31 H 1.09001 * 109.47456 * 240.02789 * 1 2 3 32 32 H 1.08998 * 110.92234 * 23.47036 * 7 5 4 33 33 H 1.08995 * 110.74439 * 260.21320 * 7 5 4 34 34 H 1.08995 * 111.00259 * 206.22966 * 8 7 5 35 35 H 1.08997 * 111.03300 * 82.39419 * 8 7 5 36 36 H 1.09002 * 110.36692 * 278.16919 * 9 8 7 37 37 H 1.08996 * 110.37071 * 155.84909 * 9 8 7 38 38 H 1.09001 * 109.47002 * 299.99404 * 15 13 11 39 39 H 1.08993 * 109.46955 * 59.99842 * 15 13 11 40 40 H 1.09000 * 109.47050 * 179.97438 * 15 13 11 41 41 H 0.97005 * 119.99945 * 180.02562 * 19 18 16 42 42 H 0.96701 * 117.00345 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5018 1.3901 0.0000 4 6 3.9100 0.4240 0.0008 5 6 5.3184 0.9602 0.0017 6 1 5.3132 2.0221 -0.2444 7 6 5.9586 0.7435 1.3889 8 6 7.4238 0.3716 1.0388 9 6 7.2343 -0.4487 -0.2615 10 7 6.1341 0.2245 -0.9754 11 6 5.9156 0.1780 -2.3046 12 8 4.9752 0.7737 -2.7858 13 6 6.8400 -0.6142 -3.1928 14 1 7.8529 -0.2209 -3.1060 15 6 6.8248 -2.0829 -2.7641 16 6 6.3788 -0.5042 -4.6233 17 1 5.5040 0.0811 -4.8650 18 6 7.0736 -1.1509 -5.6233 19 7 6.6712 -1.0545 -6.8717 20 14 8.5870 -2.1628 -5.2052 21 1 8.1832 -3.5633 -4.9215 22 1 9.5289 -2.1421 -6.3531 23 1 9.2523 -1.5873 -4.0088 24 7 3.6017 -0.8246 -0.0045 25 6 2.2944 -1.1002 0.0007 26 6 1.7611 -2.4712 0.0005 27 8 0.5597 -2.6561 -0.0002 28 8 2.6047 -3.5225 0.0012 29 1 -0.3634 1.0276 -0.0005 30 1 -0.3633 -0.5143 -0.8898 31 1 -0.3634 -0.5134 0.8902 32 1 5.4698 -0.0734 1.9199 33 1 5.9235 1.6600 1.9778 34 1 7.8703 -0.2383 1.8241 35 1 8.0205 1.2647 0.8538 36 1 6.9599 -1.4768 -0.0248 37 1 8.1448 -0.4265 -0.8602 38 1 7.1582 -2.1629 -1.7295 39 1 5.8120 -2.4762 -2.8510 40 1 7.4931 -2.6560 -3.4069 41 1 7.1598 -1.5097 -7.5753 42 1 2.2075 -4.4042 0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608065860.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:40 Heat of formation + Delta-G solvation = -101.057376 kcal Electronic energy + Delta-G solvation = -28028.570904 eV Core-core repulsion = 24099.624629 eV Total energy + Delta-G solvation = -3928.946275 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.94643 -41.19645 -40.00700 -38.34702 -37.26418 -35.89868 -34.10622 -33.50509 -32.08916 -31.00255 -28.48844 -27.16489 -25.86223 -25.74616 -24.44641 -22.90194 -22.01713 -21.13285 -20.11605 -19.45783 -18.87571 -18.62575 -17.54945 -17.42520 -17.20460 -17.10425 -16.95112 -16.10971 -15.65471 -15.39217 -15.06288 -14.66999 -14.62950 -14.41075 -14.34723 -14.28467 -13.93533 -13.82942 -13.76760 -13.35031 -13.12161 -12.89228 -12.83630 -12.68259 -12.51246 -12.49233 -12.19509 -11.96877 -11.80853 -11.66221 -11.43779 -11.22160 -10.89320 -10.79281 -10.52246 -10.46942 -10.00019 -9.62048 -8.29252 -6.36785 -0.71858 0.05269 0.41348 0.59955 1.31063 1.36856 1.48574 1.80683 1.92636 2.02306 2.19732 2.32476 2.93151 3.04434 3.54865 3.61740 3.69826 3.82423 4.00403 4.06081 4.17899 4.27390 4.36799 4.53391 4.53895 4.59296 4.65476 4.72768 4.73295 4.83962 4.92581 4.97074 4.99451 5.00697 5.14895 5.34232 5.38555 5.40759 5.44120 5.53537 6.24099 6.35895 6.55496 6.79799 6.88851 7.23857 7.41996 8.88519 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.011667 B = 0.004417 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.395512 B = 6337.040828 C = 7114.502618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.190 4.190 3 S 0.287 5.713 4 C 0.003 3.997 5 C 0.203 3.797 6 H 0.099 0.901 7 C -0.107 4.107 8 C -0.115 4.115 9 C 0.086 3.914 10 N -0.609 5.609 11 C 0.544 3.456 12 O -0.579 6.579 13 C 0.001 3.999 14 H 0.069 0.931 15 C -0.137 4.137 16 C -0.518 4.518 17 H 0.027 0.973 18 C 0.007 3.993 19 N -0.952 5.952 20 Si 0.958 3.042 21 H -0.265 1.265 22 H -0.296 1.296 23 H -0.227 1.227 24 N -0.431 5.431 25 C -0.026 4.026 26 C 0.567 3.433 27 O -0.524 6.524 28 O -0.497 6.497 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.120 0.880 34 H 0.115 0.885 35 H 0.093 0.907 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.030 0.970 40 H 0.046 0.954 41 H 0.267 0.733 42 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.165 2.445 25.554 25.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.315 4.315 3 S 0.547 5.453 4 C -0.278 4.278 5 C 0.095 3.905 6 H 0.117 0.883 7 C -0.146 4.146 8 C -0.153 4.153 9 C -0.036 4.036 10 N -0.344 5.344 11 C 0.335 3.665 12 O -0.457 6.457 13 C -0.021 4.021 14 H 0.087 0.913 15 C -0.194 4.194 16 C -0.557 4.557 17 H 0.045 0.955 18 C -0.189 4.189 19 N -0.593 5.593 20 Si 0.782 3.218 21 H -0.191 1.191 22 H -0.223 1.223 23 H -0.150 1.150 24 N -0.145 5.145 25 C -0.160 4.160 26 C 0.410 3.590 27 O -0.415 6.415 28 O -0.310 6.310 29 H 0.117 0.883 30 H 0.096 0.904 31 H 0.114 0.886 32 H 0.098 0.902 33 H 0.139 0.861 34 H 0.134 0.866 35 H 0.112 0.888 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.049 0.951 40 H 0.065 0.935 41 H 0.076 0.924 42 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -2.529 3.705 25.024 25.423 hybrid contribution -0.555 -2.196 -1.237 2.581 sum -3.084 1.508 23.787 24.034 Atomic orbital electron populations 1.20449 0.83729 1.04490 1.04361 1.26057 1.04882 0.96817 1.03741 1.82457 0.94191 1.06667 1.62016 1.27698 1.02998 0.92162 1.04986 1.20485 0.82129 0.95567 0.92275 0.88347 1.22733 0.95756 1.04705 0.91440 1.22825 0.95701 1.01104 0.95681 1.22762 0.89251 0.97195 0.94387 1.48603 1.29862 1.51341 1.04585 1.20773 0.85011 0.79648 0.81077 1.90544 1.33218 1.47044 1.74896 1.19160 0.96051 0.93839 0.93028 0.91320 1.22067 1.00554 0.95541 1.01255 1.21054 1.12735 1.31031 0.90853 0.95467 1.26025 1.01202 0.97472 0.94250 1.70080 1.42446 1.45365 1.01360 0.85728 0.78233 0.79236 0.78566 1.19110 1.22349 1.14972 1.66785 1.15687 1.18825 1.13206 1.19323 0.88828 0.92837 1.14971 1.19527 0.83369 0.84627 0.71522 1.90873 1.16207 1.86425 1.47998 1.84679 1.42639 1.19026 1.84653 0.88338 0.90403 0.88632 0.90233 0.86129 0.86635 0.88843 0.90863 0.89570 0.89650 0.95056 0.93545 0.92398 0.70705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.51 8.81 71.24 0.63 -0.89 16 2 C -0.19 -5.18 6.40 25.01 0.16 -5.02 16 3 S 0.29 6.96 22.89 -56.49 -1.29 5.67 16 4 C 0.00 0.08 5.29 88.58 0.47 0.55 16 5 C 0.20 5.27 3.35 44.59 0.15 5.42 16 6 H 0.10 2.42 8.14 -2.38 -0.02 2.40 16 7 C -0.11 -1.64 6.46 31.78 0.21 -1.43 16 8 C -0.12 -1.54 7.08 31.99 0.23 -1.31 16 9 C 0.09 1.98 5.14 86.85 0.45 2.42 16 10 N -0.61 -20.02 3.02 -792.22 -2.39 -22.41 16 11 C 0.54 24.93 7.00 87.65 0.61 25.54 16 12 O -0.58 -31.69 15.29 -3.01 -0.05 -31.74 16 13 C 0.00 0.04 1.58 -12.28 -0.02 0.02 16 14 H 0.07 3.04 6.90 -2.39 -0.02 3.03 16 15 C -0.14 -5.77 8.48 71.98 0.61 -5.16 16 16 C -0.52 -32.04 8.95 25.60 0.23 -31.81 16 17 H 0.03 1.98 7.00 -2.91 -0.02 1.96 16 18 C 0.01 0.41 5.45 84.65 0.46 0.87 16 19 N -0.95 -62.47 13.96 21.45 0.30 -62.18 16 20 Si 0.96 44.19 24.37 68.60 1.67 45.86 16 21 H -0.27 -11.64 6.87 99.48 0.68 -10.96 16 22 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 23 H -0.23 -8.95 6.53 99.48 0.65 -8.30 16 24 N -0.43 -14.65 10.55 -180.91 -1.91 -16.56 16 25 C -0.03 -0.85 6.71 40.52 0.27 -0.58 16 26 C 0.57 17.62 8.31 70.15 0.58 18.21 16 27 O -0.52 -16.56 15.49 19.65 0.30 -16.26 16 28 O -0.50 -13.40 13.37 -57.09 -0.76 -14.16 16 29 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.08 1.87 7.81 -2.38 -0.02 1.85 16 31 H 0.10 1.88 7.81 -2.39 -0.02 1.86 16 32 H 0.08 1.32 7.85 -2.39 -0.02 1.31 16 33 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.07 1.71 7.08 -2.39 -0.02 1.69 16 37 H 0.09 1.92 7.36 -2.39 -0.02 1.90 16 38 H 0.08 2.80 5.00 -2.39 -0.01 2.79 16 39 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.05 1.95 3.27 -2.39 -0.01 1.94 16 41 H 0.27 16.20 8.31 -92.70 -0.77 15.43 16 42 H 0.43 6.67 9.11 -74.06 -0.67 6.00 16 Total: -1.00 -90.33 354.81 1.23 -89.10 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.33 Total: 15.85 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: 5.03 Total: 6.83 kcal Atomic # 7 Polarization: -97.14 SS G_CDS: -4.00 Total: -101.15 kcal Atomic # 8 Polarization: -61.66 SS G_CDS: -0.50 Total: -62.16 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.67 Total: 45.86 kcal Atomic # 16 Polarization: 6.96 SS G_CDS: -1.29 Total: 5.67 kcal Total: -90.33 1.23 -89.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608065860.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.957 kcal (2) G-P(sol) polarization free energy of solvation -90.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds