Wall clock time and date at job start Tue Mar 31 2020 21:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46917 * 2 1 4 4 H 1.09006 * 109.46868 * 54.63409 * 3 2 1 5 5 C 1.50703 * 109.46978 * 174.63095 * 3 2 1 6 6 H 1.07992 * 119.99678 * 119.99856 * 5 3 2 7 7 C 1.37883 * 119.99914 * 300.00198 * 5 3 2 8 8 N 1.31514 * 119.99513 * 179.97438 * 7 5 3 9 9 Si 1.86798 * 120.00260 * 359.97438 * 7 5 3 10 10 H 1.48503 * 109.47153 * 90.00106 * 9 7 5 11 11 H 1.48500 * 109.47408 * 210.00136 * 9 7 5 12 12 H 1.48499 * 109.47114 * 330.00148 * 9 7 5 13 13 N 1.46497 * 109.47198 * 294.63072 * 3 2 1 14 14 S 1.65599 * 119.99849 * 144.20830 * 13 3 2 15 15 O 1.42103 * 106.40422 * 310.20648 * 14 13 3 16 16 O 1.42101 * 106.40199 * 177.28670 * 14 13 3 17 17 C 1.76198 * 107.22078 * 63.74497 * 14 13 3 18 18 C 1.38306 * 119.92320 * 89.99762 * 17 14 13 19 19 C 1.38107 * 120.08566 * 180.02562 * 18 17 14 20 20 C 1.38866 * 119.89645 * 0.28976 * 19 18 17 21 21 C 1.38847 * 119.86403 * 359.47731 * 20 19 18 22 22 C 1.38085 * 119.97643 * 0.49404 * 21 20 19 23 23 C 1.50657 * 119.83962 * 180.22238 * 21 20 19 24 24 C 1.52908 * 109.52423 * 326.29438 * 23 21 20 25 25 C 1.50500 * 109.89520 * 48.59441 * 24 23 21 26 26 O 1.21280 * 119.61831 * 144.80891 * 25 24 23 27 27 N 1.34570 * 120.76668 * 324.83063 * 25 24 23 28 28 H 1.09002 * 109.47664 * 55.74238 * 1 2 3 29 29 H 1.09003 * 109.47170 * 175.74466 * 1 2 3 30 30 H 1.09010 * 109.47308 * 295.74540 * 1 2 3 31 31 H 1.08992 * 109.47462 * 239.99823 * 2 1 3 32 32 H 1.09005 * 109.46933 * 119.99597 * 2 1 3 33 33 H 0.97005 * 119.99639 * 179.97438 * 8 7 5 34 34 H 0.96994 * 120.00109 * 324.21084 * 13 3 2 35 35 H 1.07992 * 119.95265 * 359.97438 * 18 17 14 36 36 H 1.08009 * 120.04685 * 180.02562 * 19 18 17 37 37 H 1.08000 * 119.98850 * 179.75392 * 22 21 20 38 38 H 1.08996 * 109.46510 * 86.31549 * 23 21 20 39 39 H 1.09005 * 109.46053 * 206.28132 * 23 21 20 40 40 H 1.08999 * 109.40216 * 168.72328 * 24 23 21 41 41 H 1.08998 * 109.40039 * 288.55753 * 24 23 21 42 42 H 0.97001 * 119.77113 * 180.77087 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6002 1.9834 0.8381 5 6 3.5411 1.4447 0.1330 6 1 4.1510 1.8875 -0.6404 7 6 4.1357 0.8811 1.2420 8 7 5.4458 0.8825 1.3577 9 14 3.0807 0.1156 2.5800 10 1 2.8607 -1.3212 2.2756 11 1 3.7706 0.2443 3.8887 12 1 1.7721 0.8150 2.6393 13 7 1.6600 2.0948 -1.2555 14 16 1.2443 3.6978 -1.2630 15 8 0.2848 3.8684 -0.2289 16 8 0.9948 4.0413 -2.6191 17 6 2.6708 4.6089 -0.7734 18 6 3.5699 5.0485 -1.7279 19 6 4.6893 5.7624 -1.3478 20 6 4.9144 6.0333 -0.0046 21 6 4.0072 5.5947 0.9506 22 6 2.8894 4.8818 0.5645 23 6 4.2493 5.8932 2.4073 24 6 5.7524 5.8830 2.6881 25 6 6.4707 6.7178 1.6623 26 8 7.4458 7.3608 1.9889 27 7 6.0433 6.7594 0.3870 28 1 -0.3634 0.5785 -0.8494 29 1 -0.3634 -1.0249 -0.0763 30 1 -0.3634 0.4464 0.9257 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 5.8641 0.4863 2.1381 34 1 1.6518 1.5878 -2.0823 35 1 3.3967 4.8325 -2.7718 36 1 5.3909 6.1058 -2.0939 37 1 2.1857 4.5371 1.3077 38 1 3.8412 6.8744 2.6497 39 1 3.7604 5.1353 3.0195 40 1 5.9379 6.2914 3.6815 41 1 6.1222 4.8587 2.6428 42 1 6.5238 7.2934 -0.2648 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647140049.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:03 Heat of formation + Delta-G solvation = -90.947816 kcal Electronic energy + Delta-G solvation = -28349.360724 eV Core-core repulsion = 24420.852833 eV Total energy + Delta-G solvation = -3928.507891 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.92114 -38.61524 -36.87720 -36.27359 -35.42536 -35.24347 -33.94672 -32.32004 -31.11945 -30.08861 -29.57120 -27.28293 -24.63894 -23.22478 -22.79860 -22.74132 -20.70771 -19.75984 -18.69558 -17.98020 -17.54111 -17.08186 -16.70767 -16.65742 -15.92199 -15.58495 -14.95912 -14.83184 -14.45657 -14.01866 -13.98266 -13.65160 -13.59811 -13.26482 -13.22988 -12.81244 -12.48943 -12.29499 -12.18206 -12.07481 -11.72935 -11.64296 -11.58025 -11.50453 -11.25354 -11.06902 -10.91331 -10.75393 -10.64891 -10.49129 -10.10612 -10.05570 -9.83732 -9.53471 -8.74946 -8.70579 -8.45547 -8.17558 -6.25781 -4.27776 0.83265 1.10254 1.48016 2.45557 2.96405 3.12844 3.25527 3.26604 3.49517 3.77255 4.22030 4.27799 4.34773 4.61440 4.69264 4.93595 5.00322 5.02866 5.15539 5.27933 5.43742 5.50170 5.72976 5.73067 5.78332 5.89001 5.92883 5.94637 6.05174 6.10369 6.18407 6.18824 6.34137 6.43327 6.50752 6.61656 6.65115 6.83886 6.84976 7.12592 7.15086 7.41683 7.74217 7.90703 8.31192 8.79572 9.34304 10.86084 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.011186 B = 0.005660 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.450573 B = 4946.080351 C = 6586.402719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.133 4.133 3 C 0.246 3.754 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.083 0.917 7 C 0.080 3.920 8 N -0.888 5.888 9 Si 0.869 3.131 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.259 1.259 13 N -1.095 6.095 14 S 2.699 3.301 15 O -0.969 6.969 16 O -0.981 6.981 17 C -0.674 4.674 18 C 0.013 3.987 19 C -0.175 4.175 20 C 0.210 3.790 21 C -0.141 4.141 22 C 0.040 3.960 23 C -0.075 4.075 24 C -0.141 4.141 25 C 0.527 3.473 26 O -0.533 6.533 27 N -0.664 5.664 28 H 0.053 0.947 29 H 0.043 0.957 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.265 0.735 34 H 0.410 0.590 35 H 0.140 0.860 36 H 0.132 0.868 37 H 0.143 0.857 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.108 0.892 41 H 0.114 0.886 42 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.055 6.995 -1.788 8.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.172 4.172 3 C 0.140 3.860 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.101 0.899 7 C -0.124 4.124 8 N -0.525 5.525 9 Si 0.698 3.302 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.184 1.184 13 N -0.854 5.854 14 S 2.789 3.211 15 O -0.959 6.959 16 O -0.972 6.972 17 C -0.762 4.762 18 C -0.007 4.007 19 C -0.196 4.196 20 C 0.113 3.887 21 C -0.144 4.144 22 C 0.021 3.979 23 C -0.112 4.112 24 C -0.181 4.181 25 C 0.317 3.683 26 O -0.409 6.409 27 N -0.307 5.307 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.244 0.756 35 H 0.158 0.842 36 H 0.150 0.850 37 H 0.160 0.840 38 H 0.099 0.901 39 H 0.115 0.885 40 H 0.126 0.874 41 H 0.132 0.868 42 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -4.192 7.686 -1.317 8.853 hybrid contribution 0.801 -0.678 0.257 1.080 sum -3.391 7.008 -1.060 7.857 Atomic orbital electron populations 1.21872 0.97353 1.00343 1.01751 1.22143 0.93982 0.99170 1.01902 1.19030 0.95891 0.90136 0.80959 0.93419 1.21385 0.89210 1.39531 1.07186 0.89854 1.24868 0.94692 0.95242 0.97576 1.69881 1.08772 1.44495 1.29361 0.87144 0.81195 0.80389 0.81460 1.20210 1.22134 1.18395 1.55221 1.86199 1.26753 1.17274 1.01440 0.73908 0.72863 0.72910 1.93549 1.57338 1.85880 1.59095 1.93528 1.84983 1.83552 1.35089 1.30737 1.23876 1.20186 1.01422 1.20579 0.90577 0.90717 0.98808 1.20719 1.00313 1.04948 0.93622 1.17780 0.85767 0.91476 0.93677 1.19450 0.95812 1.04331 0.94828 1.20478 0.94156 0.89268 0.94043 1.20404 0.94834 1.03372 0.92584 1.21740 0.95728 1.02344 0.98258 1.20885 0.83716 0.80885 0.82830 1.90751 1.26982 1.43648 1.79529 1.43710 1.28097 1.47231 1.11670 0.92787 0.93784 0.93099 0.91482 0.92284 0.92474 0.75648 0.84190 0.85015 0.83962 0.90149 0.88474 0.87354 0.86809 0.75210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 9.85 37.16 0.37 -2.17 16 2 C -0.13 -2.51 5.03 -26.73 -0.13 -2.65 16 3 C 0.25 4.99 1.86 -69.08 -0.13 4.86 16 4 H 0.05 1.01 6.59 -51.93 -0.34 0.66 16 5 C -0.53 -12.69 9.42 -34.44 -0.32 -13.02 16 6 H 0.08 2.17 8.06 -52.49 -0.42 1.74 16 7 C 0.08 2.02 5.45 -17.82 -0.10 1.92 16 8 N -0.89 -24.15 13.96 55.43 0.77 -23.38 16 9 Si 0.87 19.36 24.41 -169.99 -4.15 15.21 16 10 H -0.28 -6.06 6.83 56.52 0.39 -5.67 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.26 -5.49 6.53 56.52 0.37 -5.12 16 13 N -1.09 -19.13 4.85 -5.88 -0.03 -19.16 16 14 S 2.70 46.82 5.70 -107.50 -0.61 46.21 16 15 O -0.97 -18.64 16.67 -57.17 -0.95 -19.59 16 16 O -0.98 -17.79 17.27 -57.17 -0.99 -18.78 16 17 C -0.67 -11.27 5.93 -39.54 -0.23 -11.51 16 18 C 0.01 0.20 9.51 -39.60 -0.38 -0.18 16 19 C -0.17 -2.41 9.92 -39.40 -0.39 -2.80 16 20 C 0.21 3.04 6.50 -83.76 -0.54 2.50 16 21 C -0.14 -2.13 5.66 -104.47 -0.59 -2.73 16 22 C 0.04 0.67 9.16 -39.62 -0.36 0.30 16 23 C -0.07 -0.94 6.00 -27.95 -0.17 -1.10 16 24 C -0.14 -1.82 6.07 -28.03 -0.17 -1.99 16 25 C 0.53 7.72 7.72 -11.17 -0.09 7.64 16 26 O -0.53 -9.22 17.91 5.56 0.10 -9.12 16 27 N -0.66 -8.75 5.37 -10.01 -0.05 -8.81 16 28 H 0.05 0.82 7.65 -51.93 -0.40 0.42 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.84 8.14 -51.92 -0.42 0.41 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.06 1.20 3.22 -51.93 -0.17 1.03 16 33 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 34 H 0.41 6.20 8.84 -34.47 -0.30 5.90 16 35 H 0.14 1.85 7.61 -52.49 -0.40 1.45 16 36 H 0.13 1.41 8.06 -52.48 -0.42 0.98 16 37 H 0.14 2.24 7.61 -52.49 -0.40 1.84 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.10 1.15 8.06 -51.93 -0.42 0.73 16 40 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.11 1.61 8.14 -51.93 -0.42 1.19 16 42 H 0.41 4.47 8.83 -40.82 -0.36 4.11 16 LS Contribution 356.39 15.07 5.37 5.37 Total: -1.00 -31.70 356.39 -9.14 -40.84 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -5.36 Total: 12.12 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: -3.24 Total: -20.93 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: 0.69 Total: -51.34 kcal Atomic # 8 Polarization: -45.64 SS G_CDS: -1.84 Total: -47.48 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.15 Total: 15.21 kcal Atomic # 16 Polarization: 46.82 SS G_CDS: -0.61 Total: 46.21 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.70 -9.14 -40.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647140049.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.112 kcal (2) G-P(sol) polarization free energy of solvation -31.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds