Wall clock time and date at job start Tue Mar 31 2020 20:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40361 * 126.64351 * 2 1 4 4 C 1.35134 * 107.11185 * 180.22382 * 3 2 1 5 5 O 1.33929 * 108.76753 * 359.77883 * 4 3 2 6 6 C 1.34908 * 109.38610 * 0.02562 * 5 4 3 7 7 C 1.46661 * 125.99035 * 179.97438 * 6 5 4 8 8 O 1.21691 * 120.00145 * 180.02562 * 7 6 5 9 9 N 1.34774 * 119.99628 * 0.03020 * 7 6 5 10 10 C 1.47419 * 125.65081 * 359.96666 * 9 7 6 11 11 C 1.54908 * 104.83546 * 155.91549 * 10 9 7 12 12 C 1.55155 * 101.58016 * 37.01006 * 11 10 9 13 13 H 1.09000 * 110.72258 * 83.04063 * 12 11 10 14 14 N 1.46500 * 110.72120 * 206.13686 * 12 11 10 15 15 C 1.34779 * 120.00169 * 202.55599 * 14 12 11 16 16 O 1.21282 * 119.99922 * 0.02562 * 15 14 12 17 17 C 1.50699 * 120.00037 * 180.02562 * 15 14 12 18 18 S 1.81000 * 109.46881 * 180.02562 * 17 15 14 19 19 C 1.76206 * 99.99929 * 180.02562 * 18 17 15 20 20 H 1.07998 * 119.99720 * 359.97438 * 19 18 17 21 21 C 1.38796 * 119.99847 * 180.02562 * 19 18 17 22 22 N 1.31625 * 120.00398 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99778 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46907 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47393 * 119.99621 * 23 21 19 26 26 H 1.48503 * 109.46784 * 240.00115 * 23 21 19 27 27 C 1.47325 * 125.61122 * 180.20212 * 9 7 6 28 28 H 1.08997 * 109.47227 * 270.15595 * 1 2 3 29 29 H 1.09001 * 109.47218 * 30.15653 * 1 2 3 30 30 H 1.09004 * 109.47200 * 150.15268 * 1 2 3 31 31 H 1.08001 * 126.44414 * 359.97438 * 3 2 1 32 32 H 1.08005 * 125.61301 * 179.77655 * 4 3 2 33 33 H 1.09003 * 110.36766 * 37.07318 * 10 9 7 34 34 H 1.09001 * 110.36787 * 274.75297 * 10 9 7 35 35 H 1.08999 * 111.00459 * 278.93831 * 11 10 9 36 36 H 1.08997 * 111.03977 * 155.09588 * 11 10 9 37 37 H 0.96996 * 119.99986 * 22.56196 * 14 12 11 38 38 H 1.09000 * 109.47247 * 60.00371 * 17 15 14 39 39 H 1.09001 * 109.47358 * 299.99798 * 17 15 14 40 40 H 0.96996 * 120.00393 * 180.02562 * 22 21 19 41 41 H 1.08994 * 110.06333 * 61.67368 * 27 9 7 42 42 H 1.08999 * 109.84577 * 300.40504 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6744 -0.0050 5 8 3.6005 -0.6647 -0.0032 6 6 2.3220 -1.0955 0.0024 7 6 1.8843 -2.4953 0.0055 8 8 0.6968 -2.7614 0.0101 9 7 2.7971 -3.4868 0.0032 10 6 4.2604 -3.3075 -0.0030 11 6 4.8228 -4.6153 0.6077 12 6 3.8483 -5.6742 0.0276 13 1 4.1484 -5.9638 -0.9795 14 7 3.7767 -6.8471 0.9024 15 6 3.3783 -8.0350 0.4057 16 8 3.0795 -8.1330 -0.7657 17 6 3.3040 -9.2414 1.3057 18 16 2.7411 -10.6725 0.3512 19 6 2.7453 -11.9026 1.6128 20 1 3.0428 -11.6439 2.6182 21 6 2.3673 -13.2043 1.3141 22 7 2.0052 -13.5198 0.0886 23 14 2.3712 -14.5082 2.6518 24 1 2.8147 -13.9019 3.9327 25 1 1.0008 -15.0573 2.8118 26 1 3.3018 -15.6021 2.2740 27 6 2.4970 -4.9291 0.0016 28 1 -0.3633 0.0028 1.0276 29 1 -0.3634 0.8886 -0.5163 30 1 -0.3634 -0.8914 -0.5115 31 1 2.0306 2.1595 -0.0004 32 1 4.5046 1.2917 -0.0098 33 1 4.5403 -2.4512 0.6107 34 1 4.6225 -3.1788 -1.0230 35 1 4.7713 -4.5919 1.6963 36 1 5.8432 -4.7974 0.2707 37 1 4.0159 -6.7688 1.8391 38 1 2.6027 -9.0468 2.1172 39 1 4.2911 -9.4470 1.7200 40 1 1.7407 -14.4293 -0.1201 41 1 1.9443 -5.1951 -0.8994 42 1 1.9145 -5.1869 0.8861 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001687892177.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:47 Heat of formation + Delta-G solvation = -77.285281 kcal Electronic energy + Delta-G solvation = -25831.794958 eV Core-core repulsion = 21903.879519 eV Total energy + Delta-G solvation = -3927.915439 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.70530 -41.34208 -40.37629 -38.61009 -35.54269 -34.98371 -34.58515 -32.49813 -31.35858 -30.76624 -29.49232 -28.32964 -27.64089 -25.22638 -23.20420 -22.64249 -22.06630 -21.56872 -20.47493 -19.85485 -18.80280 -18.15771 -17.70683 -17.42920 -17.12377 -16.88897 -16.85797 -16.36644 -16.28083 -15.74819 -15.29855 -14.83162 -14.64152 -14.55646 -14.41884 -14.17290 -13.96649 -13.94453 -13.75501 -13.53809 -13.41180 -13.16155 -12.94589 -12.91322 -12.83573 -12.69960 -12.56983 -11.90593 -11.70345 -11.37231 -11.16093 -11.00464 -10.68747 -10.28524 -10.26721 -10.02888 -9.53071 -8.66586 -8.34960 -6.12780 -0.01461 1.24332 1.40059 1.40302 1.41364 1.49146 1.57383 1.60609 1.94796 2.00959 2.26510 2.32853 2.99412 3.27583 3.33236 3.40701 3.69117 3.78341 3.92940 3.94691 3.99024 4.10024 4.23392 4.31535 4.47580 4.51821 4.56131 4.60120 4.67002 4.69143 4.71400 4.75855 4.92717 4.98929 5.08293 5.13499 5.19392 5.40183 5.42376 5.45457 5.86932 6.20040 6.24236 6.45315 6.81901 7.06648 7.19836 8.74463 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.030161 B = 0.001883 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.117683 B =14864.113734 C =15282.618263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.095 4.095 3 C -0.237 4.237 4 C 0.018 3.982 5 O -0.162 6.162 6 C -0.114 4.114 7 C 0.606 3.394 8 O -0.561 6.561 9 N -0.610 5.610 10 C 0.099 3.901 11 C -0.120 4.120 12 C 0.139 3.861 13 H 0.095 0.905 14 N -0.702 5.702 15 C 0.537 3.463 16 O -0.561 6.561 17 C -0.130 4.130 18 S -0.153 6.153 19 C -0.545 4.545 20 H 0.084 0.916 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 0.999 3.001 24 H -0.256 1.256 25 H -0.276 1.276 26 H -0.273 1.273 27 C 0.098 3.902 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.059 0.941 31 H 0.181 0.819 32 H 0.259 0.741 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.123 0.877 37 H 0.421 0.579 38 H 0.109 0.891 39 H 0.115 0.885 40 H 0.271 0.729 41 H 0.051 0.949 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.656 33.406 4.846 35.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.098 4.098 3 C -0.255 4.255 4 C -0.051 4.051 5 O -0.058 6.058 6 C -0.165 4.165 7 C 0.397 3.603 8 O -0.442 6.442 9 N -0.342 5.342 10 C -0.022 4.022 11 C -0.158 4.158 12 C 0.033 3.967 13 H 0.113 0.887 14 N -0.356 5.356 15 C 0.323 3.677 16 O -0.438 6.438 17 C -0.281 4.281 18 S 0.074 5.926 19 C -0.692 4.692 20 H 0.102 0.898 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.179 1.179 25 H -0.201 1.201 26 H -0.199 1.199 27 C -0.026 4.026 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.078 0.922 31 H 0.198 0.802 32 H 0.275 0.725 33 H 0.124 0.876 34 H 0.104 0.896 35 H 0.121 0.879 36 H 0.141 0.859 37 H 0.259 0.741 38 H 0.127 0.873 39 H 0.133 0.867 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.697 32.805 2.798 34.053 hybrid contribution -0.294 -0.893 1.916 2.134 sum 8.403 31.911 4.714 33.334 Atomic orbital electron populations 1.20426 0.88480 1.03400 1.02994 1.21009 0.98062 0.92046 0.98657 1.22081 0.92422 1.00535 1.10504 1.25412 1.01293 0.79865 0.98530 1.84132 1.26814 1.23908 1.70927 1.21311 0.82867 0.93361 1.18948 1.16562 0.84520 0.82495 0.76708 1.90846 1.17096 1.83020 1.53288 1.48418 1.08517 1.05439 1.71860 1.22694 0.76856 0.99627 1.03035 1.23124 0.99740 0.90459 1.02491 1.21907 0.93601 0.84982 0.96248 0.88696 1.45648 1.68755 1.06894 1.14343 1.20125 0.75459 0.84442 0.87684 1.90713 1.48851 1.85311 1.18934 1.23374 1.06644 0.95913 1.02162 1.85612 1.87629 1.01718 1.17669 1.23242 1.52425 0.96314 0.97260 0.89790 1.26138 0.93822 1.00500 0.98828 1.70187 1.43126 1.20579 1.20932 0.84899 0.78098 0.77087 0.77822 1.17930 1.20123 1.19878 1.22383 0.98839 0.79595 1.01781 0.90587 0.89163 0.92187 0.80161 0.72527 0.87607 0.89566 0.87926 0.85889 0.74111 0.87287 0.86653 0.92024 0.93059 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.78 9.81 71.24 0.70 -1.08 16 2 C -0.09 -1.76 6.20 -19.74 -0.12 -1.88 16 3 C -0.24 -2.53 10.83 22.07 0.24 -2.29 16 4 C 0.02 0.13 12.08 67.10 0.81 0.94 16 5 O -0.16 -2.25 7.86 -4.96 -0.04 -2.29 16 6 C -0.11 -2.38 6.93 24.08 0.17 -2.21 16 7 C 0.61 16.25 7.82 86.44 0.68 16.93 16 8 O -0.56 -19.23 15.06 -4.32 -0.07 -19.29 16 9 N -0.61 -13.62 3.33 -815.75 -2.72 -16.34 16 10 C 0.10 1.30 6.17 86.86 0.54 1.83 16 11 C -0.12 -1.27 6.71 31.99 0.21 -1.06 16 12 C 0.14 2.86 3.27 46.18 0.15 3.01 16 13 H 0.09 2.30 7.62 -2.39 -0.02 2.28 16 14 N -0.70 -16.06 5.12 -436.91 -2.24 -18.30 16 15 C 0.54 18.94 7.85 87.66 0.69 19.63 16 16 O -0.56 -25.34 15.55 -3.04 -0.05 -25.39 16 17 C -0.13 -4.98 6.16 71.24 0.44 -4.54 16 18 S -0.15 -8.48 20.57 -56.49 -1.16 -9.64 16 19 C -0.54 -31.00 9.50 67.95 0.65 -30.35 16 20 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 21 C 0.01 0.67 5.49 84.86 0.47 1.14 16 22 N -0.91 -56.25 13.22 21.65 0.29 -55.96 16 23 Si 1.00 43.67 29.55 68.60 2.03 45.70 16 24 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 25 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 26 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 27 C 0.10 2.52 6.65 86.67 0.58 3.09 16 28 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.06 1.45 6.45 -2.39 -0.02 1.43 16 31 H 0.18 0.91 8.06 -2.91 -0.02 0.89 16 32 H 0.26 -0.89 8.06 -2.91 -0.02 -0.92 16 33 H 0.11 1.09 6.22 -2.39 -0.01 1.07 16 34 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.10 0.79 8.00 -2.39 -0.02 0.77 16 36 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.42 6.48 8.54 -92.71 -0.79 5.69 16 38 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 39 H 0.12 3.87 8.14 -2.40 -0.02 3.85 16 40 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 41 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.07 1.83 8.03 -2.39 -0.02 1.81 16 Total: -1.00 -86.90 371.12 2.50 -84.41 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.27 Total: 13.94 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: 6.18 Total: 3.17 kcal Atomic # 7 Polarization: -85.93 SS G_CDS: -4.67 Total: -90.60 kcal Atomic # 8 Polarization: -46.82 SS G_CDS: -0.15 Total: -46.97 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: -8.48 SS G_CDS: -1.16 Total: -9.64 kcal Total: -86.90 2.50 -84.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001687892177.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.121 kcal (2) G-P(sol) polarization free energy of solvation -86.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds