Wall clock time and date at job start Tue Mar 31 2020 20:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.34175 * 127.02669 * 2 1 4 4 O 1.34216 * 109.12686 * 179.97438 * 3 2 1 5 5 C 1.33648 * 110.91081 * 359.75614 * 4 3 2 6 6 C 1.36425 * 108.39315 * 0.39251 * 5 4 3 7 7 C 1.47375 * 127.18945 * 179.89180 * 6 5 4 8 8 O 1.21616 * 119.99903 * 179.68227 * 7 6 5 9 9 N 1.34775 * 120.00046 * 359.68716 * 7 6 5 10 10 C 1.46504 * 119.99904 * 179.97438 * 9 7 6 11 11 H 1.09002 * 110.88589 * 34.29587 * 10 9 7 12 12 C 1.55158 * 111.00367 * 158.17498 * 10 9 7 13 13 C 1.54330 * 102.94056 * 153.61244 * 12 10 9 14 14 N 1.47022 * 107.27093 * 337.81035 * 13 12 10 15 15 C 1.34778 * 125.64678 * 178.90795 * 14 13 12 16 16 O 1.21278 * 119.99957 * 180.02562 * 15 14 13 17 17 C 1.50701 * 119.99973 * 0.02562 * 15 14 13 18 18 S 1.81002 * 109.47070 * 180.02562 * 17 15 14 19 19 C 1.76197 * 99.99835 * 180.02562 * 18 17 15 20 20 H 1.07995 * 120.00198 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99649 * 180.02562 * 19 18 17 22 22 N 1.31628 * 120.00156 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99698 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47104 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.46871 * 119.99672 * 23 21 19 26 26 H 1.48492 * 109.46735 * 239.99444 * 23 21 19 27 27 C 1.47523 * 108.71559 * 358.93837 * 14 13 12 28 28 H 1.08999 * 109.47309 * 270.02920 * 1 2 3 29 29 H 1.09002 * 109.47557 * 30.02675 * 1 2 3 30 30 H 1.09001 * 109.47355 * 150.03048 * 1 2 3 31 31 H 1.08006 * 125.43700 * 359.97438 * 3 2 1 32 32 H 1.07998 * 125.80379 * 180.26807 * 5 4 3 33 33 H 0.96994 * 120.00442 * 359.97438 * 9 7 6 34 34 H 1.08996 * 110.72495 * 271.98001 * 12 10 9 35 35 H 1.09006 * 110.72015 * 35.08026 * 12 10 9 36 36 H 1.08998 * 109.87833 * 97.22798 * 13 12 10 37 37 H 1.08997 * 109.88363 * 218.23655 * 13 12 10 38 38 H 1.08995 * 109.47378 * 300.00320 * 17 15 14 39 39 H 1.08996 * 109.47169 * 60.00230 * 17 15 14 40 40 H 0.96994 * 119.99835 * 180.02562 * 22 21 19 41 41 H 1.09001 * 110.37251 * 265.30968 * 27 14 13 42 42 H 1.09004 * 110.41044 * 142.95250 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3149 1.0712 0.0000 4 8 3.5921 0.6587 0.0006 5 6 3.6623 -0.6759 0.0063 6 6 2.3922 -1.1739 0.0008 7 6 1.9913 -2.5920 0.0018 8 8 0.8123 -2.8907 0.0022 9 7 2.9311 -3.5580 0.0024 10 6 2.5326 -4.9678 0.0040 11 1 1.6170 -5.1134 -0.5693 12 6 3.6750 -5.8693 -0.5340 13 6 3.3954 -7.2254 0.1477 14 7 2.5854 -6.9536 1.3442 15 6 2.1150 -7.8811 2.2015 16 8 1.4538 -7.5411 3.1597 17 6 2.4106 -9.3405 1.9695 18 16 1.6473 -10.3266 3.2814 19 6 2.1387 -11.9413 2.7756 20 1 2.7354 -12.0699 1.8847 21 6 1.7579 -13.0482 3.5216 22 7 1.0302 -12.8915 4.6072 23 14 2.2783 -14.7601 2.9850 24 1 3.0843 -14.6654 1.7413 25 1 3.0923 -15.3886 4.0563 26 1 1.0716 -15.5872 2.7305 27 6 2.3720 -5.4978 1.4508 28 1 -0.3634 0.0005 1.0276 29 1 -0.3634 0.8897 -0.5142 30 1 -0.3634 -0.8902 -0.5134 31 1 1.9895 2.1011 -0.0004 32 1 4.5702 -1.2609 0.0120 33 1 3.8714 -3.3199 0.0018 34 1 3.6144 -5.9629 -1.6182 35 1 4.6478 -5.4782 -0.2358 36 1 2.8453 -7.8756 -0.5325 37 1 4.3353 -7.6977 0.4329 38 1 2.0053 -9.6444 1.0045 39 1 3.4891 -9.4983 1.9766 40 1 0.7645 -13.6649 5.1287 41 1 3.1219 -5.0512 2.1038 42 1 1.3695 -5.2867 1.8230 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001687913372.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:26 Heat of formation + Delta-G solvation = -53.326513 kcal Electronic energy + Delta-G solvation = -25612.293270 eV Core-core repulsion = 21685.416760 eV Total energy + Delta-G solvation = -3926.876509 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.00643 -40.34040 -39.21758 -37.26113 -34.55853 -34.21864 -32.42808 -31.69123 -30.45948 -29.69735 -27.85819 -27.59013 -25.49925 -24.38978 -23.22011 -21.60016 -20.79925 -20.53854 -19.38076 -18.49292 -17.70815 -16.99410 -16.66091 -16.61520 -16.21125 -15.53974 -15.34272 -15.00945 -14.80569 -14.73811 -14.23905 -13.92142 -13.75776 -13.66875 -13.59518 -13.38634 -13.00471 -12.87976 -12.67313 -12.54891 -12.04674 -11.92607 -11.88234 -11.74896 -11.16601 -11.06891 -11.01401 -10.76469 -10.33250 -9.97904 -9.81518 -9.58745 -9.36428 -9.12931 -9.07248 -8.53857 -8.22482 -6.50041 -6.21444 -3.92118 0.88947 1.61482 2.43933 2.55020 2.97160 3.01357 3.07315 3.21647 3.26988 3.31550 3.61979 4.01840 4.10175 4.19158 4.20752 4.34265 4.58307 4.61360 4.84372 4.92378 4.99333 5.04512 5.07823 5.13708 5.36498 5.39317 5.43607 5.46755 5.54971 5.58986 5.62095 5.64479 5.70606 5.81411 5.92234 6.02833 6.10207 6.13270 6.38298 6.49939 7.07273 7.59715 7.62851 7.85498 8.35584 8.54322 9.23786 10.86063 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.032753 B = 0.001846 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.687992 B =15163.977747 C =15584.107534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.130 4.130 3 C -0.047 4.047 4 O -0.172 6.172 5 C 0.022 3.978 6 C -0.233 4.233 7 C 0.588 3.412 8 O -0.523 6.523 9 N -0.718 5.718 10 C 0.134 3.866 11 H 0.109 0.891 12 C -0.136 4.136 13 C 0.104 3.896 14 N -0.626 5.626 15 C 0.549 3.451 16 O -0.512 6.512 17 C -0.146 4.146 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.099 3.901 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.208 0.792 32 H 0.211 0.789 33 H 0.399 0.601 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.268 0.732 41 H 0.067 0.933 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.921 27.139 -14.875 32.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C -0.113 4.113 4 O -0.066 6.066 5 C -0.049 4.049 6 C -0.238 4.238 7 C 0.376 3.624 8 O -0.399 6.399 9 N -0.370 5.370 10 C 0.028 3.972 11 H 0.127 0.873 12 C -0.174 4.174 13 C -0.019 4.019 14 N -0.364 5.364 15 C 0.337 3.663 16 O -0.385 6.385 17 C -0.297 4.297 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.746 3.254 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.026 4.026 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.225 0.775 32 H 0.227 0.773 33 H 0.234 0.766 34 H 0.109 0.891 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.170 27.462 -13.236 31.317 hybrid contribution 1.600 -1.510 -1.424 2.621 sum 8.770 25.952 -14.661 31.070 Atomic orbital electron populations 1.20263 0.88161 1.03303 1.02849 1.21454 0.97421 0.90278 1.04021 1.23754 0.79532 0.99806 1.08181 1.83786 1.29775 1.22257 1.70823 1.24408 0.98676 0.81299 1.00478 1.21402 0.93478 0.94134 1.14780 1.17285 0.85586 0.83706 0.75854 1.90821 1.17201 1.83119 1.48791 1.45679 1.09388 1.05532 1.76393 1.22120 0.99270 0.79187 0.96587 0.87301 1.22925 0.98451 0.94646 1.01420 1.21947 0.96094 0.96796 0.87106 1.48421 1.54785 1.06181 1.27062 1.20058 0.78298 0.86751 0.81155 1.90722 1.37755 1.81460 1.28609 1.23503 1.05289 0.93851 1.07014 1.85442 1.68728 0.99554 1.29707 1.22898 1.39320 0.91721 1.14342 0.90856 1.25003 0.94700 0.99348 0.94583 1.70028 1.34420 1.30960 1.14820 0.86110 0.78421 0.82322 0.78593 1.19617 1.20569 1.20560 1.22495 1.03053 0.80915 0.96123 0.90969 0.91642 0.89843 0.77516 0.77283 0.76643 0.89114 0.89910 0.90765 0.90734 0.89203 0.89254 0.92222 0.91517 0.89740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.72 10.00 36.00 0.36 -0.36 16 2 C -0.13 -1.10 6.37 -102.50 -0.65 -1.75 16 3 C -0.05 -0.29 11.96 29.30 0.35 0.06 16 4 O -0.17 -1.13 10.52 7.66 0.08 -1.05 16 5 C 0.02 0.12 11.61 30.08 0.35 0.47 16 6 C -0.23 -2.01 6.31 -103.27 -0.65 -2.66 16 7 C 0.59 6.13 7.81 -12.54 -0.10 6.03 16 8 O -0.52 -7.58 15.10 5.26 0.08 -7.50 16 9 N -0.72 -5.33 5.21 -52.81 -0.27 -5.61 16 10 C 0.13 1.23 3.37 -65.78 -0.22 1.01 16 11 H 0.11 1.19 7.63 -51.93 -0.40 0.80 16 12 C -0.14 -0.88 6.59 -24.89 -0.16 -1.04 16 13 C 0.10 1.02 6.49 -3.06 -0.02 1.00 16 14 N -0.63 -9.09 3.33 -170.44 -0.57 -9.65 16 15 C 0.55 10.84 7.87 -10.98 -0.09 10.75 16 16 O -0.51 -12.30 16.12 5.56 0.09 -12.21 16 17 C -0.15 -3.01 5.35 36.01 0.19 -2.82 16 18 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 19 C -0.53 -15.29 9.50 30.94 0.29 -15.00 16 20 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 21 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.31 13.22 55.49 0.73 -25.58 16 23 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 C 0.10 1.26 6.61 -2.48 -0.02 1.24 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.85 6.91 -51.93 -0.36 0.49 16 31 H 0.21 0.55 8.06 -52.48 -0.42 0.13 16 32 H 0.21 0.24 7.47 -52.49 -0.39 -0.15 16 33 H 0.40 1.53 7.51 -40.82 -0.31 1.22 16 34 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.37 8.00 -51.93 -0.42 -0.04 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 39 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 40 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.08 1.33 8.04 -51.93 -0.42 0.91 16 LS Contribution 375.14 15.07 5.65 5.65 Total: -1.00 -39.00 375.14 -7.54 -46.54 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -5.64 Total: -2.05 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -0.46 Total: -1.07 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: -0.11 Total: -40.84 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: 0.25 Total: -20.76 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -39.00 -7.54 -46.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001687913372.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.788 kcal (2) G-P(sol) polarization free energy of solvation -39.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds