Wall clock time and date at job start Tue Mar 31 2020 20:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.34175 * 127.02669 * 2 1 4 4 O 1.34216 * 109.12686 * 179.97438 * 3 2 1 5 5 C 1.33648 * 110.91081 * 359.75614 * 4 3 2 6 6 C 1.36425 * 108.39315 * 0.39251 * 5 4 3 7 7 C 1.47375 * 127.18945 * 179.89180 * 6 5 4 8 8 O 1.21616 * 119.99903 * 179.68227 * 7 6 5 9 9 N 1.34775 * 120.00046 * 359.68716 * 7 6 5 10 10 C 1.46504 * 119.99904 * 179.97438 * 9 7 6 11 11 H 1.09002 * 110.88589 * 34.29587 * 10 9 7 12 12 C 1.55158 * 111.00367 * 158.17498 * 10 9 7 13 13 C 1.54330 * 102.94056 * 153.61244 * 12 10 9 14 14 N 1.47022 * 107.27093 * 337.81035 * 13 12 10 15 15 C 1.34778 * 125.64678 * 178.90795 * 14 13 12 16 16 O 1.21278 * 119.99957 * 180.02562 * 15 14 13 17 17 C 1.50701 * 119.99973 * 0.02562 * 15 14 13 18 18 S 1.81002 * 109.47070 * 180.02562 * 17 15 14 19 19 C 1.76197 * 99.99835 * 180.02562 * 18 17 15 20 20 H 1.07995 * 120.00198 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99649 * 180.02562 * 19 18 17 22 22 N 1.31628 * 120.00156 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99698 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47104 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.46871 * 119.99672 * 23 21 19 26 26 H 1.48492 * 109.46735 * 239.99444 * 23 21 19 27 27 C 1.47523 * 108.71559 * 358.93837 * 14 13 12 28 28 H 1.08999 * 109.47309 * 270.02920 * 1 2 3 29 29 H 1.09002 * 109.47557 * 30.02675 * 1 2 3 30 30 H 1.09001 * 109.47355 * 150.03048 * 1 2 3 31 31 H 1.08006 * 125.43700 * 359.97438 * 3 2 1 32 32 H 1.07998 * 125.80379 * 180.26807 * 5 4 3 33 33 H 0.96994 * 120.00442 * 359.97438 * 9 7 6 34 34 H 1.08996 * 110.72495 * 271.98001 * 12 10 9 35 35 H 1.09006 * 110.72015 * 35.08026 * 12 10 9 36 36 H 1.08998 * 109.87833 * 97.22798 * 13 12 10 37 37 H 1.08997 * 109.88363 * 218.23655 * 13 12 10 38 38 H 1.08995 * 109.47378 * 300.00320 * 17 15 14 39 39 H 1.08996 * 109.47169 * 60.00230 * 17 15 14 40 40 H 0.96994 * 119.99835 * 180.02562 * 22 21 19 41 41 H 1.09001 * 110.37251 * 265.30968 * 27 14 13 42 42 H 1.09004 * 110.41044 * 142.95250 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3149 1.0712 0.0000 4 8 3.5921 0.6587 0.0006 5 6 3.6623 -0.6759 0.0063 6 6 2.3922 -1.1739 0.0008 7 6 1.9913 -2.5920 0.0018 8 8 0.8123 -2.8907 0.0022 9 7 2.9311 -3.5580 0.0024 10 6 2.5326 -4.9678 0.0040 11 1 1.6170 -5.1134 -0.5693 12 6 3.6750 -5.8693 -0.5340 13 6 3.3954 -7.2254 0.1477 14 7 2.5854 -6.9536 1.3442 15 6 2.1150 -7.8811 2.2015 16 8 1.4538 -7.5411 3.1597 17 6 2.4106 -9.3405 1.9695 18 16 1.6473 -10.3266 3.2814 19 6 2.1387 -11.9413 2.7756 20 1 2.7354 -12.0699 1.8847 21 6 1.7579 -13.0482 3.5216 22 7 1.0302 -12.8915 4.6072 23 14 2.2783 -14.7601 2.9850 24 1 3.0843 -14.6654 1.7413 25 1 3.0923 -15.3886 4.0563 26 1 1.0716 -15.5872 2.7305 27 6 2.3720 -5.4978 1.4508 28 1 -0.3634 0.0005 1.0276 29 1 -0.3634 0.8897 -0.5142 30 1 -0.3634 -0.8902 -0.5134 31 1 1.9895 2.1011 -0.0004 32 1 4.5702 -1.2609 0.0120 33 1 3.8714 -3.3199 0.0018 34 1 3.6144 -5.9629 -1.6182 35 1 4.6478 -5.4782 -0.2358 36 1 2.8453 -7.8756 -0.5325 37 1 4.3353 -7.6977 0.4329 38 1 2.0053 -9.6444 1.0045 39 1 3.4891 -9.4983 1.9766 40 1 0.7645 -13.6649 5.1287 41 1 3.1219 -5.0512 2.1038 42 1 1.3695 -5.2867 1.8230 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001687913372.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:25 Heat of formation + Delta-G solvation = -82.670581 kcal Electronic energy + Delta-G solvation = -25613.565724 eV Core-core repulsion = 21685.416760 eV Total energy + Delta-G solvation = -3928.148964 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.50639 -41.34944 -40.33634 -38.46285 -35.50139 -34.79319 -34.59469 -32.64827 -31.30051 -30.85345 -28.96742 -28.15943 -27.66426 -25.26895 -24.07872 -22.30823 -21.40817 -21.20899 -20.73624 -19.66677 -19.00225 -18.14800 -17.82875 -17.17015 -16.93288 -16.89614 -16.73689 -16.40594 -15.93547 -15.70254 -15.60525 -15.23752 -14.62062 -14.50085 -14.36787 -14.29283 -14.15182 -13.99681 -13.85479 -13.45078 -13.42057 -13.16369 -12.91746 -12.81987 -12.62658 -12.59442 -12.45854 -11.87288 -11.72928 -11.18916 -11.16574 -11.05494 -10.63062 -10.28891 -10.27016 -9.75177 -9.60644 -8.69969 -8.35371 -6.14648 0.35469 1.06747 1.20178 1.41806 1.42542 1.50854 1.56186 1.81862 2.06782 2.25065 2.26101 2.28643 2.98946 3.19387 3.38653 3.50940 3.60272 3.67642 3.87149 3.96388 4.05609 4.17514 4.21702 4.29827 4.35279 4.42863 4.49976 4.59516 4.72900 4.76275 4.77763 4.92022 4.95385 5.03254 5.06147 5.09322 5.20152 5.40608 5.41429 5.48998 6.00323 6.19421 6.31407 6.47859 7.05130 7.05830 7.16305 8.74318 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.032753 B = 0.001846 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.687992 B =15163.977747 C =15584.107534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.169 4.169 3 C -0.033 4.033 4 O -0.174 6.174 5 C 0.053 3.947 6 C -0.273 4.273 7 C 0.584 3.416 8 O -0.578 6.578 9 N -0.697 5.697 10 C 0.144 3.856 11 H 0.087 0.913 12 C -0.114 4.114 13 C 0.089 3.911 14 N -0.616 5.616 15 C 0.544 3.456 16 O -0.571 6.571 17 C -0.116 4.116 18 S -0.158 6.158 19 C -0.543 4.543 20 H 0.086 0.914 21 C 0.011 3.989 22 N -0.913 5.913 23 Si 1.002 2.998 24 H -0.254 1.254 25 H -0.274 1.274 26 H -0.275 1.275 27 C 0.095 3.905 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.053 0.947 31 H 0.241 0.759 32 H 0.257 0.743 33 H 0.421 0.579 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.109 0.891 39 H 0.113 0.887 40 H 0.271 0.729 41 H 0.079 0.921 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.829 27.888 -17.680 35.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.171 4.171 3 C -0.098 4.098 4 O -0.068 6.068 5 C -0.017 4.017 6 C -0.278 4.278 7 C 0.374 3.626 8 O -0.458 6.458 9 N -0.350 5.350 10 C 0.037 3.963 11 H 0.105 0.895 12 C -0.152 4.152 13 C -0.033 4.033 14 N -0.351 5.351 15 C 0.332 3.668 16 O -0.449 6.449 17 C -0.267 4.267 18 S 0.070 5.930 19 C -0.691 4.691 20 H 0.104 0.896 21 C -0.193 4.193 22 N -0.549 5.549 23 Si 0.823 3.177 24 H -0.177 1.177 25 H -0.199 1.199 26 H -0.201 1.201 27 C -0.029 4.029 28 H 0.081 0.919 29 H 0.107 0.893 30 H 0.072 0.928 31 H 0.257 0.743 32 H 0.273 0.727 33 H 0.260 0.740 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.100 0.900 37 H 0.112 0.888 38 H 0.127 0.873 39 H 0.131 0.869 40 H 0.080 0.920 41 H 0.097 0.903 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 11.164 28.256 -16.105 34.386 hybrid contribution 0.425 -1.573 -0.601 1.737 sum 11.588 26.683 -16.706 33.546 Atomic orbital electron populations 1.20169 0.88896 1.02938 1.02166 1.21680 0.97610 0.91486 1.06295 1.24275 0.78932 1.00567 1.06015 1.83836 1.29815 1.22691 1.70453 1.25177 0.98899 0.80982 0.96649 1.21406 0.95193 0.93120 1.18046 1.17680 0.85162 0.84936 0.74823 1.90800 1.19565 1.83981 1.51469 1.45439 1.10170 1.04248 1.75157 1.21875 1.00245 0.80555 0.93639 0.89466 1.22944 0.98358 0.91303 1.02599 1.22428 0.96115 0.99417 0.85325 1.48329 1.53560 1.06144 1.27106 1.19911 0.78294 0.87173 0.81392 1.90697 1.40651 1.82183 1.31385 1.23281 1.05799 0.93209 1.04448 1.85688 1.70801 1.02085 1.34469 1.23226 1.39416 0.91688 1.14764 0.89617 1.26185 0.94412 1.04355 0.94397 1.70201 1.35883 1.32472 1.16364 0.84862 0.78218 0.75818 0.78766 1.17730 1.19887 1.20055 1.22617 1.01113 0.80126 0.99052 0.91896 0.89309 0.92822 0.74339 0.72748 0.74014 0.86271 0.86539 0.90033 0.88788 0.87331 0.86888 0.91999 0.90251 0.93946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.49 10.00 71.23 0.71 -0.77 16 2 C -0.17 -2.80 6.37 -18.49 -0.12 -2.92 16 3 C -0.03 -0.33 11.96 66.89 0.80 0.47 16 4 O -0.17 -1.71 10.52 4.50 0.05 -1.67 16 5 C 0.05 0.41 11.61 67.40 0.78 1.20 16 6 C -0.27 -4.42 6.31 -18.99 -0.12 -4.54 16 7 C 0.58 12.18 7.81 86.65 0.68 12.86 16 8 O -0.58 -18.06 15.10 -4.08 -0.06 -18.12 16 9 N -0.70 -8.93 5.21 -439.25 -2.29 -11.21 16 10 C 0.14 2.41 3.37 46.38 0.16 2.57 16 11 H 0.09 1.92 7.63 -2.39 -0.02 1.90 16 12 C -0.11 -0.96 6.59 31.79 0.21 -0.75 16 13 C 0.09 1.44 6.49 86.73 0.56 2.01 16 14 N -0.62 -17.42 3.33 -811.53 -2.70 -20.13 16 15 C 0.54 21.90 7.87 87.66 0.69 22.59 16 16 O -0.57 -29.05 16.12 -3.02 -0.05 -29.09 16 17 C -0.12 -4.77 5.35 71.24 0.38 -4.39 16 18 S -0.16 -8.99 20.57 -56.49 -1.16 -10.16 16 19 C -0.54 -31.23 9.50 67.96 0.65 -30.59 16 20 H 0.09 4.53 7.80 -2.91 -0.02 4.51 16 21 C 0.01 0.63 5.49 84.86 0.47 1.10 16 22 N -0.91 -56.79 13.22 21.65 0.29 -56.51 16 23 Si 1.00 43.69 29.55 68.60 2.03 45.71 16 24 H -0.25 -10.22 7.11 99.48 0.71 -9.51 16 25 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 26 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 27 C 0.10 2.45 6.61 86.84 0.57 3.02 16 28 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.05 1.24 6.91 -2.39 -0.02 1.23 16 31 H 0.24 0.55 8.06 -2.91 -0.02 0.53 16 32 H 0.26 -0.82 7.47 -2.91 -0.02 -0.84 16 33 H 0.42 1.46 7.51 -92.71 -0.70 0.77 16 34 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.12 0.30 8.00 -2.38 -0.02 0.28 16 36 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.11 4.02 8.14 -2.40 -0.02 4.00 16 39 H 0.11 4.08 8.14 -2.40 -0.02 4.06 16 40 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 41 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.04 1.45 8.04 -2.38 -0.02 1.43 16 Total: -1.00 -93.96 375.14 2.88 -91.08 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 0.36 Total: 8.24 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: 6.42 Total: 1.85 kcal Atomic # 7 Polarization: -83.14 SS G_CDS: -4.70 Total: -87.85 kcal Atomic # 8 Polarization: -48.82 SS G_CDS: -0.06 Total: -48.88 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: -8.99 SS G_CDS: -1.16 Total: -10.16 kcal Total: -93.96 2.88 -91.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001687913372.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.412 kcal (2) G-P(sol) polarization free energy of solvation -93.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds