Wall clock time and date at job start Tue Mar 31 2020 20:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40371 * 126.64331 * 2 1 4 4 C 1.35124 * 107.11123 * 180.29896 * 3 2 1 5 5 O 1.33932 * 108.77048 * 359.74160 * 4 3 2 6 6 C 1.34912 * 109.38411 * 0.02562 * 5 4 3 7 7 C 1.46654 * 125.99142 * 180.02562 * 6 5 4 8 8 O 1.21694 * 120.00275 * 180.02562 * 7 6 5 9 9 N 1.34781 * 119.99847 * 0.02562 * 7 6 5 10 10 C 1.46500 * 119.99985 * 179.97438 * 9 7 6 11 11 H 1.09002 * 112.85221 * 334.67013 * 10 9 7 12 12 C 1.53785 * 113.68813 * 105.94035 * 10 9 7 13 13 C 1.53777 * 87.08241 * 89.12417 * 12 10 9 14 14 H 1.08999 * 113.60923 * 139.97748 * 13 12 10 15 15 N 1.46497 * 113.69163 * 270.87365 * 13 12 10 16 16 C 1.34780 * 119.99934 * 252.53129 * 15 13 12 17 17 O 1.21282 * 119.99670 * 0.02562 * 16 15 13 18 18 C 1.50698 * 120.00100 * 180.02562 * 16 15 13 19 19 S 1.80998 * 109.47179 * 180.02562 * 18 16 15 20 20 C 1.76198 * 100.00022 * 179.97438 * 19 18 16 21 21 H 1.08000 * 120.00302 * 0.02562 * 20 19 18 22 22 C 1.38805 * 119.99840 * 179.97438 * 20 19 18 23 23 N 1.31630 * 119.99486 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 120.00055 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.46895 * 90.00057 * 24 22 20 26 26 H 1.48496 * 109.46729 * 209.99965 * 24 22 20 27 27 H 1.48498 * 109.47134 * 330.00060 * 24 22 20 28 28 C 1.53781 * 113.61339 * 203.47543 * 10 9 7 29 29 H 1.08999 * 109.47210 * 270.13345 * 1 2 3 30 30 H 1.09004 * 109.47454 * 30.13514 * 1 2 3 31 31 H 1.08996 * 109.46945 * 150.13055 * 1 2 3 32 32 H 1.07994 * 126.44440 * 0.04279 * 3 2 1 33 33 H 1.08006 * 125.61753 * 179.78250 * 4 3 2 34 34 H 0.96998 * 119.99866 * 0.02562 * 9 7 6 35 35 H 1.08999 * 113.61060 * 203.67840 * 12 10 9 36 36 H 1.08997 * 113.61198 * 334.57634 * 12 10 9 37 37 H 0.97002 * 120.00525 * 72.53733 * 15 13 12 38 38 H 1.09006 * 109.46839 * 300.00223 * 18 16 15 39 39 H 1.08997 * 109.46999 * 60.00576 * 18 16 15 40 40 H 0.97003 * 119.99472 * 180.02562 * 23 22 20 41 41 H 1.09000 * 113.61578 * 25.34726 * 28 10 9 42 42 H 1.09001 * 113.61682 * 156.17306 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1263 0.0000 4 6 3.6183 0.6745 -0.0067 5 8 3.6005 -0.6647 -0.0051 6 6 2.3220 -1.0955 0.0021 7 6 1.8842 -2.4952 0.0065 8 8 0.6968 -2.7613 0.0125 9 7 2.7971 -3.4868 0.0039 10 6 2.3598 -4.8850 0.0089 11 1 1.3691 -5.0171 0.4439 12 6 2.5378 -5.5928 -1.3447 13 6 3.9489 -5.9769 -0.8694 14 1 4.2410 -6.9907 -1.1435 15 7 4.9721 -4.9814 -1.1982 16 6 5.8737 -5.2365 -2.1670 17 8 5.8376 -6.2900 -2.7669 18 6 6.9267 -4.2127 -2.5049 19 16 7.9775 -4.8447 -3.8362 20 6 9.0845 -3.4867 -4.0232 21 1 8.9762 -2.6119 -3.3992 22 6 10.0963 -3.5416 -4.9718 23 7 10.9235 -2.5272 -5.1111 24 14 10.2840 -5.0550 -6.0506 25 1 9.4756 -4.8863 -7.2848 26 1 11.7131 -5.2290 -6.4148 27 1 9.8126 -6.2525 -5.3098 28 6 3.4123 -5.8575 0.5669 29 1 -0.3633 0.0024 1.0276 30 1 -0.3634 0.8888 -0.5159 31 1 -0.3633 -0.8911 -0.5118 32 1 2.0306 2.1595 0.0006 33 1 4.5046 1.2917 -0.0119 34 1 3.7436 -3.2746 -0.0005 35 1 1.8751 -6.4474 -1.4809 36 1 2.5340 -4.9130 -2.1967 37 1 5.0009 -4.1387 -0.7187 38 1 6.4454 -3.2900 -2.8293 39 1 7.5364 -4.0141 -1.6235 40 1 11.6304 -2.5655 -5.7742 41 1 4.1146 -5.3915 1.2580 42 1 2.9887 -6.7840 0.9546 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688039406.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:13 Heat of formation + Delta-G solvation = -32.579786 kcal Electronic energy + Delta-G solvation = -26322.085241 eV Core-core repulsion = 22396.108377 eV Total energy + Delta-G solvation = -3925.976864 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.02492 -40.86814 -39.29105 -38.01892 -34.64088 -33.80035 -32.94319 -32.46692 -30.71231 -29.33564 -27.98820 -26.08315 -25.67093 -24.92533 -23.09498 -21.78588 -20.89329 -20.30193 -19.86376 -18.45688 -17.89077 -16.82782 -16.68737 -16.35373 -16.30736 -15.93370 -15.30707 -15.06913 -15.00635 -14.70867 -14.55258 -13.95067 -13.79174 -13.40509 -13.39023 -13.30218 -13.02844 -12.88003 -12.86036 -12.82036 -12.25434 -12.09159 -12.08492 -11.29805 -11.10741 -11.03187 -10.81214 -10.58481 -10.46091 -10.03421 -9.88933 -9.61900 -9.51979 -9.09702 -9.02223 -8.90452 -8.54252 -6.95533 -6.32025 -4.03998 0.72130 2.01569 2.31559 2.61854 2.80586 2.83424 2.86493 3.25671 3.31504 3.48076 3.59109 4.10059 4.22067 4.30380 4.34196 4.44031 4.55884 4.61725 4.69575 4.79584 5.07203 5.15631 5.16923 5.19924 5.29208 5.35403 5.36976 5.41906 5.44994 5.59158 5.69387 5.72285 5.74518 5.78851 5.83441 5.94710 6.03888 6.15753 6.46741 6.53394 7.04794 7.44649 7.70593 7.91044 8.37978 8.38750 9.14170 10.77195 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.011926 B = 0.002912 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.274054 B = 9614.332749 C =11532.672837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.081 4.081 3 C -0.229 4.229 4 C 0.007 3.993 5 O -0.163 6.163 6 C -0.095 4.095 7 C 0.611 3.389 8 O -0.516 6.516 9 N -0.704 5.704 10 C 0.117 3.883 11 H 0.109 0.891 12 C -0.164 4.164 13 C 0.121 3.879 14 H 0.109 0.891 15 N -0.720 5.720 16 C 0.535 3.465 17 O -0.513 6.513 18 C -0.126 4.126 19 S -0.139 6.139 20 C -0.522 4.522 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 C -0.152 4.152 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.157 0.843 33 H 0.213 0.787 34 H 0.400 0.600 35 H 0.103 0.897 36 H 0.078 0.922 37 H 0.391 0.609 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.271 0.729 41 H 0.080 0.920 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.647 3.262 15.406 25.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.084 4.084 3 C -0.248 4.248 4 C -0.063 4.063 5 O -0.059 6.059 6 C -0.147 4.147 7 C 0.398 3.602 8 O -0.393 6.393 9 N -0.356 5.356 10 C 0.012 3.988 11 H 0.127 0.873 12 C -0.204 4.204 13 C 0.014 3.986 14 H 0.127 0.873 15 N -0.376 5.376 16 C 0.321 3.679 17 O -0.387 6.387 18 C -0.277 4.277 19 S 0.087 5.913 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.517 5.517 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 C -0.191 4.191 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.175 0.825 33 H 0.230 0.770 34 H 0.237 0.763 35 H 0.121 0.879 36 H 0.097 0.903 37 H 0.226 0.774 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.081 0.919 41 H 0.099 0.901 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -20.136 1.156 14.307 24.728 hybrid contribution 0.917 1.739 0.315 1.991 sum -19.219 2.895 14.622 24.322 Atomic orbital electron populations 1.20441 0.88178 1.03725 1.02876 1.20666 0.97681 0.91010 0.99082 1.21776 0.92419 1.00255 1.10350 1.24474 1.00168 0.80414 1.01252 1.84064 1.28106 1.22937 1.70747 1.21741 0.81794 0.94596 1.16559 1.16474 0.85642 0.81801 0.76265 1.90847 1.15596 1.82365 1.50515 1.45703 1.09599 1.05574 1.74736 1.22019 0.99579 0.79434 0.97746 0.87276 1.23935 0.97381 1.01316 0.97810 1.21880 0.87582 0.94439 0.94659 0.87307 1.45801 1.32046 1.20041 1.39673 1.20315 0.81056 0.87992 0.78555 1.90705 1.72312 1.25769 1.49868 1.23296 0.98996 1.00708 1.04652 1.84804 1.34968 1.27641 1.43872 1.22307 1.16327 1.02929 1.25382 0.89386 1.24712 0.94134 0.96413 0.96030 1.69937 1.17088 1.30336 1.34294 0.86737 0.78418 0.84562 0.82154 1.19193 1.19913 1.15906 1.23729 0.98119 1.00431 0.96838 0.90758 0.91353 0.89488 0.82534 0.77030 0.76306 0.87857 0.90320 0.77392 0.88491 0.88358 0.91915 0.90107 0.86956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.84 9.81 36.01 0.35 -0.49 16 2 C -0.08 -0.83 6.20 -104.43 -0.65 -1.47 16 3 C -0.23 -1.87 10.83 -39.89 -0.43 -2.30 16 4 C 0.01 0.05 12.08 29.62 0.36 0.41 16 5 O -0.16 -1.63 10.40 5.00 0.05 -1.58 16 6 C -0.10 -1.05 7.13 -36.80 -0.26 -1.31 16 7 C 0.61 6.99 7.79 -12.86 -0.10 6.89 16 8 O -0.52 -6.92 14.36 5.19 0.07 -6.85 16 9 N -0.70 -6.59 5.12 -54.33 -0.28 -6.87 16 10 C 0.12 0.99 4.30 -67.12 -0.29 0.71 16 11 H 0.11 0.95 7.50 -51.93 -0.39 0.56 16 12 C -0.16 -1.57 7.68 -25.92 -0.20 -1.77 16 13 C 0.12 1.24 4.32 -67.12 -0.29 0.95 16 14 H 0.11 1.28 7.46 -51.93 -0.39 0.89 16 15 N -0.72 -8.66 5.14 -53.01 -0.27 -8.93 16 16 C 0.53 9.13 7.85 -10.98 -0.09 9.05 16 17 O -0.51 -10.69 15.46 5.56 0.09 -10.61 16 18 C -0.13 -2.36 6.16 36.00 0.22 -2.14 16 19 S -0.14 -3.47 18.55 -107.50 -1.99 -5.47 16 20 C -0.52 -14.83 10.04 30.94 0.31 -14.52 16 21 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 22 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 23 N -0.88 -26.30 13.97 55.49 0.78 -25.52 16 24 Si 0.86 21.60 27.74 -169.99 -4.72 16.89 16 25 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.24 -5.91 6.74 56.52 0.38 -5.53 16 28 C -0.15 -1.08 7.58 -25.91 -0.20 -1.27 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.09 0.90 6.45 -51.93 -0.34 0.56 16 32 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.21 0.87 8.06 -52.48 -0.42 0.44 16 34 H 0.40 3.33 5.93 -40.82 -0.24 3.09 16 35 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.39 3.77 6.16 -40.82 -0.25 3.52 16 38 H 0.10 1.71 8.14 -51.91 -0.42 1.28 16 39 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 40 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 370.04 15.07 5.58 5.58 Total: -1.00 -35.67 370.04 -7.46 -43.13 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -5.41 Total: 4.81 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -1.35 Total: -4.59 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: 0.22 Total: -41.33 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: 0.21 Total: -19.03 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.72 Total: 16.89 kcal Atomic # 16 Polarization: -3.47 SS G_CDS: -1.99 Total: -5.47 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.67 -7.46 -43.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688039406.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.555 kcal (2) G-P(sol) polarization free energy of solvation -35.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds