Wall clock time and date at job start Tue Mar 31 2020 20:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40371 * 126.64331 * 2 1 4 4 C 1.35124 * 107.11123 * 180.29896 * 3 2 1 5 5 O 1.33932 * 108.77048 * 359.74160 * 4 3 2 6 6 C 1.34912 * 109.38411 * 0.02562 * 5 4 3 7 7 C 1.46654 * 125.99142 * 180.02562 * 6 5 4 8 8 O 1.21694 * 120.00275 * 180.02562 * 7 6 5 9 9 N 1.34781 * 119.99847 * 0.02562 * 7 6 5 10 10 C 1.46500 * 119.99985 * 179.97438 * 9 7 6 11 11 H 1.09002 * 112.85221 * 334.67013 * 10 9 7 12 12 C 1.53785 * 113.68813 * 105.94035 * 10 9 7 13 13 C 1.53777 * 87.08241 * 89.12417 * 12 10 9 14 14 H 1.08999 * 113.60923 * 139.97748 * 13 12 10 15 15 N 1.46497 * 113.69163 * 270.87365 * 13 12 10 16 16 C 1.34780 * 119.99934 * 252.53129 * 15 13 12 17 17 O 1.21282 * 119.99670 * 0.02562 * 16 15 13 18 18 C 1.50698 * 120.00100 * 180.02562 * 16 15 13 19 19 S 1.80998 * 109.47179 * 180.02562 * 18 16 15 20 20 C 1.76198 * 100.00022 * 179.97438 * 19 18 16 21 21 H 1.08000 * 120.00302 * 0.02562 * 20 19 18 22 22 C 1.38805 * 119.99840 * 179.97438 * 20 19 18 23 23 N 1.31630 * 119.99486 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 120.00055 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.46895 * 90.00057 * 24 22 20 26 26 H 1.48496 * 109.46729 * 209.99965 * 24 22 20 27 27 H 1.48498 * 109.47134 * 330.00060 * 24 22 20 28 28 C 1.53781 * 113.61339 * 203.47543 * 10 9 7 29 29 H 1.08999 * 109.47210 * 270.13345 * 1 2 3 30 30 H 1.09004 * 109.47454 * 30.13514 * 1 2 3 31 31 H 1.08996 * 109.46945 * 150.13055 * 1 2 3 32 32 H 1.07994 * 126.44440 * 0.04279 * 3 2 1 33 33 H 1.08006 * 125.61753 * 179.78250 * 4 3 2 34 34 H 0.96998 * 119.99866 * 0.02562 * 9 7 6 35 35 H 1.08999 * 113.61060 * 203.67840 * 12 10 9 36 36 H 1.08997 * 113.61198 * 334.57634 * 12 10 9 37 37 H 0.97002 * 120.00525 * 72.53733 * 15 13 12 38 38 H 1.09006 * 109.46839 * 300.00223 * 18 16 15 39 39 H 1.08997 * 109.46999 * 60.00576 * 18 16 15 40 40 H 0.97003 * 119.99472 * 180.02562 * 23 22 20 41 41 H 1.09000 * 113.61578 * 25.34726 * 28 10 9 42 42 H 1.09001 * 113.61682 * 156.17306 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1263 0.0000 4 6 3.6183 0.6745 -0.0067 5 8 3.6005 -0.6647 -0.0051 6 6 2.3220 -1.0955 0.0021 7 6 1.8842 -2.4952 0.0065 8 8 0.6968 -2.7613 0.0125 9 7 2.7971 -3.4868 0.0039 10 6 2.3598 -4.8850 0.0089 11 1 1.3691 -5.0171 0.4439 12 6 2.5378 -5.5928 -1.3447 13 6 3.9489 -5.9769 -0.8694 14 1 4.2410 -6.9907 -1.1435 15 7 4.9721 -4.9814 -1.1982 16 6 5.8737 -5.2365 -2.1670 17 8 5.8376 -6.2900 -2.7669 18 6 6.9267 -4.2127 -2.5049 19 16 7.9775 -4.8447 -3.8362 20 6 9.0845 -3.4867 -4.0232 21 1 8.9762 -2.6119 -3.3992 22 6 10.0963 -3.5416 -4.9718 23 7 10.9235 -2.5272 -5.1111 24 14 10.2840 -5.0550 -6.0506 25 1 9.4756 -4.8863 -7.2848 26 1 11.7131 -5.2290 -6.4148 27 1 9.8126 -6.2525 -5.3098 28 6 3.4123 -5.8575 0.5669 29 1 -0.3633 0.0024 1.0276 30 1 -0.3634 0.8888 -0.5159 31 1 -0.3633 -0.8911 -0.5118 32 1 2.0306 2.1595 0.0006 33 1 4.5046 1.2917 -0.0119 34 1 3.7436 -3.2746 -0.0005 35 1 1.8751 -6.4474 -1.4809 36 1 2.5340 -4.9130 -2.1967 37 1 5.0009 -4.1387 -0.7187 38 1 6.4454 -3.2900 -2.8293 39 1 7.5364 -4.0141 -1.6235 40 1 11.6304 -2.5655 -5.7742 41 1 4.1146 -5.3915 1.2580 42 1 2.9887 -6.7840 0.9546 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688039406.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:12 Heat of formation + Delta-G solvation = -58.175606 kcal Electronic energy + Delta-G solvation = -26323.195159 eV Core-core repulsion = 22396.108377 eV Total energy + Delta-G solvation = -3927.086782 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.70957 -41.76110 -40.38373 -39.06682 -35.38800 -34.75948 -34.66614 -33.96979 -31.40480 -30.73889 -28.72131 -27.86774 -26.77709 -25.76381 -23.89930 -22.56684 -21.89627 -21.24732 -20.68441 -19.85163 -19.20517 -18.05649 -17.45339 -17.27889 -17.20341 -17.05076 -16.85821 -16.54383 -16.01364 -15.80438 -15.57609 -15.30278 -14.94447 -14.74511 -14.47285 -14.10874 -14.03229 -13.92195 -13.55581 -13.54707 -13.40346 -13.33755 -13.08295 -13.01940 -12.79628 -12.63834 -11.90976 -11.87899 -11.52724 -11.30051 -11.17739 -11.05060 -10.69959 -10.54952 -10.32438 -10.15585 -9.60712 -9.00556 -8.52171 -6.22849 -0.02484 0.96387 1.31022 1.37411 1.45030 1.48610 1.52712 1.62905 1.98182 2.01605 2.23471 2.28130 2.70258 2.86308 3.37232 3.49387 3.66501 3.77338 3.79676 3.87962 3.92966 4.08517 4.20254 4.42784 4.50267 4.56073 4.61508 4.69940 4.75153 4.76214 4.79300 4.80619 4.95550 4.99714 5.09490 5.16982 5.27170 5.42707 5.56755 5.70324 5.82122 6.11070 6.28993 6.32283 6.90221 6.93208 7.10785 8.60160 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.011926 B = 0.002912 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.274054 B = 9614.332749 C =11532.672837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.093 4.093 3 C -0.237 4.237 4 C 0.012 3.988 5 O -0.173 6.173 6 C -0.125 4.125 7 C 0.607 3.393 8 O -0.544 6.544 9 N -0.698 5.698 10 C 0.116 3.884 11 H 0.112 0.888 12 C -0.162 4.162 13 C 0.107 3.893 14 H 0.097 0.903 15 N -0.698 5.698 16 C 0.540 3.460 17 O -0.555 6.555 18 C -0.114 4.114 19 S -0.173 6.173 20 C -0.528 4.528 21 H 0.063 0.937 22 C 0.046 3.954 23 N -0.916 5.916 24 Si 0.913 3.087 25 H -0.264 1.264 26 H -0.259 1.259 27 H -0.236 1.236 28 C -0.127 4.127 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.181 0.819 33 H 0.248 0.752 34 H 0.405 0.595 35 H 0.122 0.878 36 H 0.053 0.947 37 H 0.405 0.595 38 H 0.110 0.890 39 H 0.117 0.883 40 H 0.277 0.723 41 H 0.092 0.908 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.330 3.221 16.680 26.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.096 4.096 3 C -0.255 4.255 4 C -0.057 4.057 5 O -0.069 6.069 6 C -0.176 4.176 7 C 0.395 3.605 8 O -0.424 6.424 9 N -0.350 5.350 10 C 0.012 3.988 11 H 0.129 0.871 12 C -0.202 4.202 13 C 0.001 3.999 14 H 0.115 0.885 15 N -0.353 5.353 16 C 0.325 3.675 17 O -0.432 6.432 18 C -0.265 4.265 19 S 0.054 5.946 20 C -0.676 4.676 21 H 0.082 0.918 22 C -0.159 4.159 23 N -0.554 5.554 24 Si 0.735 3.265 25 H -0.188 1.188 26 H -0.183 1.183 27 H -0.160 1.160 28 C -0.165 4.165 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.086 0.914 32 H 0.198 0.802 33 H 0.264 0.736 34 H 0.242 0.758 35 H 0.140 0.860 36 H 0.072 0.928 37 H 0.242 0.758 38 H 0.129 0.871 39 H 0.135 0.865 40 H 0.086 0.914 41 H 0.110 0.890 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -20.828 1.133 15.624 26.061 hybrid contribution 1.029 1.878 0.024 2.142 sum -19.799 3.011 15.648 25.415 Atomic orbital electron populations 1.20436 0.87722 1.03609 1.03242 1.21047 0.98393 0.91693 0.98444 1.22107 0.92253 1.00906 1.10278 1.25282 1.01475 0.79770 0.99199 1.84048 1.27642 1.24119 1.71041 1.21749 0.82487 0.94677 1.18725 1.16625 0.85515 0.82410 0.75930 1.90822 1.16622 1.82896 1.52050 1.45689 1.09568 1.05714 1.73983 1.22093 1.00392 0.79131 0.97222 0.87052 1.23971 0.97193 1.01641 0.97407 1.22128 0.87070 0.93186 0.97469 0.88482 1.45575 1.30902 1.20954 1.37822 1.19957 0.81398 0.86859 0.79246 1.90695 1.73570 1.27188 1.51764 1.23288 0.98836 1.01479 1.02876 1.84726 1.35718 1.26957 1.47249 1.22453 1.17092 1.03238 1.24789 0.91831 1.25546 0.93978 0.99055 0.97347 1.70013 1.17924 1.32130 1.35365 0.85889 0.79081 0.81172 0.80376 1.18847 1.18344 1.15973 1.23695 0.97041 1.01113 0.94681 0.90128 0.89556 0.91422 0.80175 0.73582 0.75783 0.86027 0.92799 0.75780 0.87150 0.86471 0.91367 0.88982 0.84143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.61 9.81 71.24 0.70 -0.91 16 2 C -0.09 -1.81 6.20 -19.74 -0.12 -1.93 16 3 C -0.24 -3.41 10.83 22.07 0.24 -3.17 16 4 C 0.01 0.16 12.08 67.10 0.81 0.97 16 5 O -0.17 -3.23 10.40 -5.03 -0.05 -3.28 16 6 C -0.13 -2.69 7.13 24.07 0.17 -2.52 16 7 C 0.61 13.74 7.79 86.44 0.67 14.41 16 8 O -0.54 -14.74 14.36 -4.33 -0.06 -14.80 16 9 N -0.70 -12.26 5.12 -444.01 -2.27 -14.53 16 10 C 0.12 1.76 4.30 45.52 0.20 1.96 16 11 H 0.11 1.73 7.50 -2.39 -0.02 1.71 16 12 C -0.16 -2.88 7.68 31.12 0.24 -2.64 16 13 C 0.11 1.99 4.32 45.52 0.20 2.19 16 14 H 0.10 2.14 7.46 -2.39 -0.02 2.12 16 15 N -0.70 -15.62 5.14 -440.03 -2.26 -17.88 16 16 C 0.54 17.86 7.85 87.66 0.69 18.55 16 17 O -0.55 -22.91 15.46 -3.04 -0.05 -22.96 16 18 C -0.11 -4.16 6.16 71.24 0.44 -3.72 16 19 S -0.17 -8.60 18.55 -56.49 -1.05 -9.65 16 20 C -0.53 -30.28 10.04 67.96 0.68 -29.60 16 21 H 0.06 3.83 8.03 -2.91 -0.02 3.80 16 22 C 0.05 2.68 5.50 84.86 0.47 3.15 16 23 N -0.92 -55.21 13.97 21.65 0.30 -54.91 16 24 Si 0.91 44.59 27.74 68.60 1.90 46.49 16 25 H -0.26 -12.63 7.11 99.48 0.71 -11.92 16 26 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 27 H -0.24 -11.47 6.74 99.48 0.67 -10.80 16 28 C -0.13 -1.40 7.58 31.12 0.24 -1.17 16 29 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 1.43 6.45 -2.39 -0.02 1.42 16 32 H 0.18 1.59 8.06 -2.91 -0.02 1.57 16 33 H 0.25 1.22 8.06 -2.91 -0.02 1.20 16 34 H 0.40 6.11 5.93 -92.71 -0.55 5.56 16 35 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.05 1.24 8.14 -2.39 -0.02 1.23 16 37 H 0.40 6.94 6.16 -92.71 -0.57 6.37 16 38 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 39 H 0.12 3.85 8.14 -2.40 -0.02 3.83 16 40 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 41 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -78.87 370.04 1.99 -76.88 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -0.09 Total: 19.06 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: 5.61 Total: -4.43 kcal Atomic # 7 Polarization: -83.08 SS G_CDS: -4.23 Total: -87.31 kcal Atomic # 8 Polarization: -40.88 SS G_CDS: -0.16 Total: -41.04 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.90 Total: 46.49 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.05 Total: -9.65 kcal Total: -78.87 1.99 -76.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688039406.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.706 kcal (2) G-P(sol) polarization free energy of solvation -78.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds