Wall clock time and date at job start Tue Mar 31 2020 20:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34181 * 127.02182 * 2 1 4 4 O 1.34218 * 109.12387 * 180.26620 * 3 2 1 5 5 C 1.33650 * 110.90453 * 359.71298 * 4 3 2 6 6 C 1.36418 * 108.40287 * 359.97438 * 5 4 3 7 7 C 1.47371 * 127.19564 * 180.02562 * 6 5 4 8 8 O 1.21616 * 120.00321 * 180.02562 * 7 6 5 9 9 N 1.34776 * 119.99909 * 0.02728 * 7 6 5 10 10 C 1.46509 * 120.00025 * 174.39520 * 9 7 6 11 11 C 1.52997 * 115.55888 * 319.39676 * 10 9 7 12 12 N 1.46499 * 109.47314 * 279.59513 * 11 10 9 13 13 C 1.34778 * 120.00077 * 185.00801 * 12 11 10 14 14 O 1.21281 * 120.00249 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99982 * 179.97438 * 13 12 11 16 16 S 1.81000 * 109.47177 * 179.97438 * 15 13 12 17 17 C 1.76198 * 99.99854 * 180.02562 * 16 15 13 18 18 H 1.07998 * 120.00285 * 0.02562 * 17 16 15 19 19 C 1.38800 * 119.99726 * 179.97438 * 17 16 15 20 20 N 1.31635 * 119.99905 * 179.97438 * 19 17 16 21 21 Si 1.86793 * 120.00247 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.46912 * 90.00084 * 21 19 17 23 23 H 1.48504 * 109.47436 * 209.99738 * 21 19 17 24 24 H 1.48495 * 109.47237 * 330.00065 * 21 19 17 25 25 C 1.53000 * 117.50019 * 173.70801 * 10 9 7 26 26 C 1.52999 * 60.03039 * 252.49851 * 25 10 9 27 27 H 1.08999 * 109.47314 * 270.20450 * 1 2 3 28 28 H 1.09003 * 109.47280 * 30.20064 * 1 2 3 29 29 H 1.08997 * 109.47538 * 150.19814 * 1 2 3 30 30 H 1.08006 * 125.44157 * 359.97438 * 3 2 1 31 31 H 1.08008 * 125.79888 * 180.02562 * 5 4 3 32 32 H 0.97000 * 120.00375 * 354.38985 * 9 7 6 33 33 H 1.09000 * 109.47381 * 39.59532 * 11 10 9 34 34 H 1.08999 * 109.47287 * 159.59501 * 11 10 9 35 35 H 0.97002 * 120.00188 * 4.99890 * 12 11 10 36 36 H 1.08994 * 109.47258 * 299.99973 * 15 13 12 37 37 H 1.09000 * 109.47049 * 59.99594 * 15 13 12 38 38 H 0.96997 * 120.00084 * 180.02562 * 20 19 17 39 39 H 1.08998 * 117.49673 * 359.97438 * 25 10 9 40 40 H 1.09000 * 117.49731 * 144.99161 * 25 10 9 41 41 H 1.09000 * 117.50036 * 107.50492 * 26 25 10 42 42 H 1.09003 * 117.49930 * 252.51974 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5921 0.6588 -0.0059 5 6 3.6622 -0.6758 -0.0036 6 6 2.3922 -1.1738 0.0046 7 6 1.9913 -2.5919 0.0102 8 8 0.8124 -2.8906 0.0170 9 7 2.9312 -3.5579 0.0079 10 6 2.5377 -4.9632 0.1374 11 6 1.4214 -5.2459 1.1448 12 7 1.9821 -5.2814 2.4978 13 6 1.1996 -5.6158 3.5430 14 8 0.0311 -5.8868 3.3635 15 6 1.7765 -5.6528 4.9347 16 16 0.4861 -6.1315 6.1102 17 6 1.4097 -6.0947 7.6102 18 1 2.4562 -5.8284 7.5936 19 6 0.7921 -6.4069 8.8133 20 7 1.4822 -6.3799 9.9339 21 14 -1.0185 -6.8654 8.8424 22 1 -1.1599 -8.3341 8.6742 23 1 -1.6120 -6.4565 10.1408 24 1 -1.7230 -6.1703 7.7354 25 6 3.6321 -6.0207 -0.0196 26 6 2.5889 -5.8309 -1.1226 27 1 -0.3634 0.0037 1.0276 28 1 -0.3634 0.8882 -0.5170 29 1 -0.3634 -0.8917 -0.5107 30 1 1.9895 2.1012 -0.0004 31 1 4.5702 -1.2608 -0.0069 32 1 3.8682 -3.3228 -0.0796 33 1 0.6691 -4.4596 1.0838 34 1 0.9612 -6.2074 0.9169 35 1 2.9165 -5.0644 2.6414 36 1 2.5894 -6.3779 4.9718 37 1 2.1578 -4.6658 5.1963 38 1 1.0507 -6.5984 10.7747 39 1 4.6449 -5.6709 -0.2197 40 1 3.5572 -6.9177 0.5951 41 1 2.9155 -5.3562 -2.0479 42 1 1.8274 -6.6028 -1.2333 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689570923.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:25 Heat of formation + Delta-G solvation = -28.962705 kcal Electronic energy + Delta-G solvation = -26108.407827 eV Core-core repulsion = 22182.587812 eV Total energy + Delta-G solvation = -3925.820015 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.94199 -40.42556 -38.97271 -37.64115 -34.19369 -33.99230 -33.39979 -32.41628 -30.68574 -29.81895 -27.52122 -26.51272 -25.55077 -24.37844 -22.95318 -21.46913 -20.58527 -20.33971 -20.00677 -18.48846 -17.88529 -16.85962 -16.60560 -16.44098 -16.30647 -15.56689 -15.36997 -15.04088 -14.99574 -14.86198 -14.59394 -13.93054 -13.77462 -13.63582 -13.28162 -13.21809 -13.06527 -12.81509 -12.78513 -12.64119 -11.97702 -11.87195 -11.78279 -11.47757 -11.23598 -10.99307 -10.98442 -10.58054 -10.07243 -9.90703 -9.83608 -9.53811 -9.20613 -9.05143 -8.98206 -8.75437 -8.46387 -6.88519 -6.26996 -3.98128 0.93853 1.68469 2.48549 2.61044 2.75641 2.95234 3.06599 3.22176 3.35285 3.51342 3.53970 3.78015 4.09461 4.18108 4.21844 4.35748 4.40845 4.52550 4.61356 4.79548 4.89564 5.05863 5.12203 5.14415 5.21976 5.34224 5.46519 5.48728 5.52674 5.56392 5.63973 5.68407 5.71210 5.80200 5.97849 6.04272 6.18291 6.23441 6.56728 6.59122 7.10496 7.68300 7.90742 7.96215 8.43331 8.57537 9.19480 10.82293 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.012490 B = 0.002622 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.231915 B =10674.699357 C =11732.237947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.128 4.128 3 C -0.047 4.047 4 O -0.171 6.171 5 C 0.021 3.979 6 C -0.233 4.233 7 C 0.591 3.409 8 O -0.513 6.513 9 N -0.698 5.698 10 C 0.093 3.907 11 C 0.137 3.863 12 N -0.733 5.733 13 C 0.529 3.471 14 O -0.518 6.518 15 C -0.122 4.122 16 S -0.141 6.141 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.882 5.882 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C -0.168 4.168 26 C -0.170 4.170 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.209 0.791 31 H 0.209 0.791 32 H 0.399 0.601 33 H 0.108 0.892 34 H 0.077 0.923 35 H 0.396 0.604 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.270 0.730 39 H 0.102 0.898 40 H 0.111 0.889 41 H 0.101 0.899 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.810 11.376 -26.547 30.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.130 4.130 3 C -0.112 4.112 4 O -0.066 6.066 5 C -0.050 4.050 6 C -0.237 4.237 7 C 0.380 3.620 8 O -0.389 6.389 9 N -0.350 5.350 10 C 0.005 3.995 11 C 0.013 3.987 12 N -0.387 5.387 13 C 0.315 3.685 14 O -0.392 6.392 15 C -0.273 4.273 16 S 0.085 5.915 17 C -0.668 4.668 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.518 5.518 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.159 1.159 25 C -0.206 4.206 26 C -0.209 4.209 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.101 0.899 30 H 0.225 0.775 31 H 0.226 0.774 32 H 0.234 0.766 33 H 0.126 0.874 34 H 0.096 0.904 35 H 0.229 0.771 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.080 0.920 39 H 0.120 0.880 40 H 0.130 0.870 41 H 0.119 0.881 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.207 10.902 -26.622 29.430 hybrid contribution 1.754 0.207 0.548 1.850 sum 7.961 11.109 -26.074 29.439 Atomic orbital electron populations 1.20270 0.88107 1.03232 1.03005 1.21457 0.97448 0.90228 1.03892 1.23759 0.79493 0.99826 1.08153 1.83785 1.29802 1.22194 1.70805 1.24372 0.98599 0.81373 1.00657 1.21392 0.93496 0.94087 1.14771 1.17243 0.85480 0.83502 0.75821 1.90732 1.17335 1.82628 1.48226 1.45133 1.09507 1.04583 1.75735 1.20870 0.99850 0.79111 0.99676 1.21279 0.94240 1.04039 0.79153 1.45907 1.13847 1.72471 1.06474 1.20242 0.86349 0.76020 0.85869 1.90707 1.16329 1.46937 1.85250 1.23265 1.04125 1.05576 0.94352 1.84809 1.15256 1.90423 1.00969 1.22326 0.99492 1.54103 0.90913 0.89442 1.24712 0.98623 0.93633 0.94351 1.69941 1.36792 1.46860 0.98242 0.86734 0.85131 0.80484 0.79522 1.19201 1.19952 1.15864 1.23388 0.94771 0.99903 1.02546 1.23485 1.01980 1.02207 0.93239 0.90823 0.91659 0.89866 0.77490 0.77416 0.76581 0.87420 0.90445 0.77053 0.88598 0.88657 0.91965 0.87997 0.87029 0.88106 0.87531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.85 10.00 36.00 0.36 -0.49 16 2 C -0.13 -1.24 6.37 -102.50 -0.65 -1.89 16 3 C -0.05 -0.34 11.96 29.30 0.35 0.01 16 4 O -0.17 -1.30 10.52 7.65 0.08 -1.22 16 5 C 0.02 0.13 11.61 30.08 0.35 0.48 16 6 C -0.23 -2.23 6.31 -103.28 -0.65 -2.88 16 7 C 0.59 6.56 7.58 -12.54 -0.10 6.46 16 8 O -0.51 -7.67 12.79 5.26 0.07 -7.60 16 9 N -0.70 -5.44 5.56 -48.65 -0.27 -5.71 16 10 C 0.09 0.81 2.23 -131.78 -0.29 0.52 16 11 C 0.14 1.78 5.42 -4.04 -0.02 1.76 16 12 N -0.73 -10.02 5.51 -60.30 -0.33 -10.36 16 13 C 0.53 9.92 7.85 -10.98 -0.09 9.84 16 14 O -0.52 -11.84 15.86 5.56 0.09 -11.76 16 15 C -0.12 -2.44 6.16 36.01 0.22 -2.22 16 16 S -0.14 -3.66 18.55 -107.50 -1.99 -5.66 16 17 C -0.52 -15.22 10.04 30.94 0.31 -14.91 16 18 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 19 C 0.10 2.82 5.50 -17.43 -0.10 2.73 16 20 N -0.88 -26.88 13.97 55.49 0.78 -26.10 16 21 Si 0.86 22.14 27.74 -169.99 -4.71 17.42 16 22 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.23 -6.09 6.74 56.52 0.38 -5.71 16 25 C -0.17 -1.04 10.10 -26.73 -0.27 -1.31 16 26 C -0.17 -1.22 10.11 -26.70 -0.27 -1.49 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.94 6.92 -51.93 -0.36 0.58 16 30 H 0.21 0.80 8.06 -52.48 -0.42 0.38 16 31 H 0.21 0.42 7.49 -52.48 -0.39 0.02 16 32 H 0.40 1.69 7.77 -40.82 -0.32 1.38 16 33 H 0.11 1.76 5.22 -51.93 -0.27 1.49 16 34 H 0.08 1.05 7.94 -51.93 -0.41 0.64 16 35 H 0.40 4.26 8.48 -40.82 -0.35 3.91 16 36 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 37 H 0.10 1.79 8.14 -51.92 -0.42 1.37 16 38 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 39 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.11 0.78 8.08 -51.93 -0.42 0.36 16 LS Contribution 375.99 15.07 5.67 5.67 Total: -1.00 -38.38 375.99 -6.96 -45.34 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -5.48 Total: 3.37 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -0.85 Total: -3.39 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: 0.17 Total: -42.16 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: 0.24 Total: -20.58 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.71 Total: 17.42 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.66 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -38.38 -6.96 -45.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689570923.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.375 kcal (2) G-P(sol) polarization free energy of solvation -38.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds