Wall clock time and date at job start Tue Mar 31 2020 20:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34181 * 127.02182 * 2 1 4 4 O 1.34218 * 109.12387 * 180.26620 * 3 2 1 5 5 C 1.33650 * 110.90453 * 359.71298 * 4 3 2 6 6 C 1.36418 * 108.40287 * 359.97438 * 5 4 3 7 7 C 1.47371 * 127.19564 * 180.02562 * 6 5 4 8 8 O 1.21616 * 120.00321 * 180.02562 * 7 6 5 9 9 N 1.34776 * 119.99909 * 0.02728 * 7 6 5 10 10 C 1.46509 * 120.00025 * 174.39520 * 9 7 6 11 11 C 1.52997 * 115.55888 * 319.39676 * 10 9 7 12 12 N 1.46499 * 109.47314 * 279.59513 * 11 10 9 13 13 C 1.34778 * 120.00077 * 185.00801 * 12 11 10 14 14 O 1.21281 * 120.00249 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99982 * 179.97438 * 13 12 11 16 16 S 1.81000 * 109.47177 * 179.97438 * 15 13 12 17 17 C 1.76198 * 99.99854 * 180.02562 * 16 15 13 18 18 H 1.07998 * 120.00285 * 0.02562 * 17 16 15 19 19 C 1.38800 * 119.99726 * 179.97438 * 17 16 15 20 20 N 1.31635 * 119.99905 * 179.97438 * 19 17 16 21 21 Si 1.86793 * 120.00247 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.46912 * 90.00084 * 21 19 17 23 23 H 1.48504 * 109.47436 * 209.99738 * 21 19 17 24 24 H 1.48495 * 109.47237 * 330.00065 * 21 19 17 25 25 C 1.53000 * 117.50019 * 173.70801 * 10 9 7 26 26 C 1.52999 * 60.03039 * 252.49851 * 25 10 9 27 27 H 1.08999 * 109.47314 * 270.20450 * 1 2 3 28 28 H 1.09003 * 109.47280 * 30.20064 * 1 2 3 29 29 H 1.08997 * 109.47538 * 150.19814 * 1 2 3 30 30 H 1.08006 * 125.44157 * 359.97438 * 3 2 1 31 31 H 1.08008 * 125.79888 * 180.02562 * 5 4 3 32 32 H 0.97000 * 120.00375 * 354.38985 * 9 7 6 33 33 H 1.09000 * 109.47381 * 39.59532 * 11 10 9 34 34 H 1.08999 * 109.47287 * 159.59501 * 11 10 9 35 35 H 0.97002 * 120.00188 * 4.99890 * 12 11 10 36 36 H 1.08994 * 109.47258 * 299.99973 * 15 13 12 37 37 H 1.09000 * 109.47049 * 59.99594 * 15 13 12 38 38 H 0.96997 * 120.00084 * 180.02562 * 20 19 17 39 39 H 1.08998 * 117.49673 * 359.97438 * 25 10 9 40 40 H 1.09000 * 117.49731 * 144.99161 * 25 10 9 41 41 H 1.09000 * 117.50036 * 107.50492 * 26 25 10 42 42 H 1.09003 * 117.49930 * 252.51974 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5921 0.6588 -0.0059 5 6 3.6622 -0.6758 -0.0036 6 6 2.3922 -1.1738 0.0046 7 6 1.9913 -2.5919 0.0102 8 8 0.8124 -2.8906 0.0170 9 7 2.9312 -3.5579 0.0079 10 6 2.5377 -4.9632 0.1374 11 6 1.4214 -5.2459 1.1448 12 7 1.9821 -5.2814 2.4978 13 6 1.1996 -5.6158 3.5430 14 8 0.0311 -5.8868 3.3635 15 6 1.7765 -5.6528 4.9347 16 16 0.4861 -6.1315 6.1102 17 6 1.4097 -6.0947 7.6102 18 1 2.4562 -5.8284 7.5936 19 6 0.7921 -6.4069 8.8133 20 7 1.4822 -6.3799 9.9339 21 14 -1.0185 -6.8654 8.8424 22 1 -1.1599 -8.3341 8.6742 23 1 -1.6120 -6.4565 10.1408 24 1 -1.7230 -6.1703 7.7354 25 6 3.6321 -6.0207 -0.0196 26 6 2.5889 -5.8309 -1.1226 27 1 -0.3634 0.0037 1.0276 28 1 -0.3634 0.8882 -0.5170 29 1 -0.3634 -0.8917 -0.5107 30 1 1.9895 2.1012 -0.0004 31 1 4.5702 -1.2608 -0.0069 32 1 3.8682 -3.3228 -0.0796 33 1 0.6691 -4.4596 1.0838 34 1 0.9612 -6.2074 0.9169 35 1 2.9165 -5.0644 2.6414 36 1 2.5894 -6.3779 4.9718 37 1 2.1578 -4.6658 5.1963 38 1 1.0507 -6.5984 10.7747 39 1 4.6449 -5.6709 -0.2197 40 1 3.5572 -6.9177 0.5951 41 1 2.9155 -5.3562 -2.0479 42 1 1.8274 -6.6028 -1.2333 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689570923.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:24 Heat of formation + Delta-G solvation = -58.561088 kcal Electronic energy + Delta-G solvation = -26109.691309 eV Core-core repulsion = 22182.587812 eV Total energy + Delta-G solvation = -3927.103498 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.51809 -41.31205 -40.31651 -38.46804 -35.32677 -34.80703 -34.68159 -34.15143 -31.40520 -31.23059 -28.17855 -27.98902 -27.48380 -25.09089 -23.52688 -22.08249 -21.78085 -21.22564 -20.83306 -19.86673 -19.10199 -18.02427 -17.67270 -17.29492 -17.14070 -17.10380 -16.61848 -16.45632 -15.92373 -15.79595 -15.65776 -15.33919 -14.93702 -14.68975 -14.55759 -14.31677 -14.28435 -14.02958 -13.50828 -13.44020 -13.39859 -13.34397 -13.01913 -12.68481 -12.48084 -12.45492 -12.13094 -11.87948 -11.71810 -11.18291 -11.11113 -10.92958 -10.60873 -10.54856 -10.05213 -9.90716 -9.61562 -9.01597 -8.52958 -6.23761 0.34871 0.96454 1.05495 1.29862 1.45464 1.53171 1.54296 1.86808 2.08940 2.10223 2.23992 2.26865 2.68494 2.85311 2.90044 3.44074 3.57112 3.64303 3.72038 3.82213 3.98849 4.03897 4.19875 4.31231 4.42448 4.44921 4.52234 4.58121 4.74121 4.74776 4.89565 4.94734 4.97990 5.02617 5.05580 5.18224 5.33227 5.44170 5.48491 5.69777 5.99082 6.10045 6.42881 6.50927 6.92520 7.16220 7.20520 8.59465 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.012490 B = 0.002622 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.231915 B =10674.699357 C =11732.237947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.169 4.169 3 C -0.033 4.033 4 O -0.174 6.174 5 C 0.050 3.950 6 C -0.272 4.272 7 C 0.585 3.415 8 O -0.565 6.565 9 N -0.678 5.678 10 C 0.072 3.928 11 C 0.138 3.862 12 N -0.704 5.704 13 C 0.531 3.469 14 O -0.566 6.566 15 C -0.107 4.107 16 S -0.179 6.179 17 C -0.527 4.527 18 H 0.064 0.936 19 C 0.047 3.953 20 N -0.916 5.916 21 Si 0.912 3.088 22 H -0.261 1.261 23 H -0.258 1.258 24 H -0.240 1.240 25 C -0.138 4.138 26 C -0.168 4.168 27 H 0.058 0.942 28 H 0.088 0.912 29 H 0.055 0.945 30 H 0.240 0.760 31 H 0.256 0.744 32 H 0.420 0.580 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.414 0.586 36 H 0.119 0.881 37 H 0.110 0.890 38 H 0.277 0.723 39 H 0.135 0.865 40 H 0.110 0.890 41 H 0.115 0.885 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.379 11.963 -28.188 32.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.171 4.171 3 C -0.099 4.099 4 O -0.068 6.068 5 C -0.020 4.020 6 C -0.276 4.276 7 C 0.375 3.625 8 O -0.445 6.445 9 N -0.330 5.330 10 C -0.016 4.016 11 C 0.014 3.986 12 N -0.357 5.357 13 C 0.317 3.683 14 O -0.444 6.444 15 C -0.258 4.258 16 S 0.048 5.952 17 C -0.675 4.675 18 H 0.082 0.918 19 C -0.158 4.158 20 N -0.554 5.554 21 Si 0.734 3.266 22 H -0.186 1.186 23 H -0.182 1.182 24 H -0.164 1.164 25 C -0.176 4.176 26 C -0.207 4.207 27 H 0.077 0.923 28 H 0.107 0.893 29 H 0.074 0.926 30 H 0.256 0.744 31 H 0.272 0.728 32 H 0.259 0.741 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.251 0.749 36 H 0.137 0.863 37 H 0.129 0.871 38 H 0.087 0.913 39 H 0.153 0.847 40 H 0.128 0.872 41 H 0.133 0.867 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 8.879 11.505 -28.286 31.801 hybrid contribution 1.086 0.076 0.936 1.436 sum 9.966 11.581 -27.350 31.328 Atomic orbital electron populations 1.20158 0.88972 1.02996 1.01978 1.21679 0.97562 0.91584 1.06261 1.24264 0.78981 1.00562 1.06070 1.83830 1.29759 1.22715 1.70486 1.25151 0.98893 0.81004 0.97001 1.21461 0.95079 0.93370 1.17737 1.17596 0.85199 0.84619 0.75104 1.90718 1.19546 1.83428 1.50856 1.44908 1.10067 1.03608 1.74455 1.20637 1.00673 0.80246 1.00032 1.21184 0.95559 1.02399 0.79428 1.45644 1.14176 1.70081 1.05828 1.20048 0.85941 0.76022 0.86295 1.90696 1.18346 1.49573 1.85803 1.23236 1.02393 1.06842 0.93330 1.84800 1.18150 1.90980 1.01318 1.22442 0.98789 1.53645 0.92595 0.91765 1.25528 1.02557 0.93631 0.94122 1.70009 1.38603 1.47836 0.98967 0.85894 0.80385 0.80365 0.79909 1.18553 1.18201 1.16425 1.23521 0.95447 0.97965 1.00633 1.23565 1.02393 1.01317 0.93414 0.92316 0.89295 0.92626 0.74437 0.72850 0.74133 0.90768 0.91357 0.74885 0.86324 0.87150 0.91318 0.84659 0.87214 0.86663 0.88211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.72 10.00 71.23 0.71 -1.01 16 2 C -0.17 -3.24 6.37 -18.49 -0.12 -3.36 16 3 C -0.03 -0.43 11.96 66.89 0.80 0.37 16 4 O -0.17 -2.12 10.52 4.46 0.05 -2.07 16 5 C 0.05 0.49 11.61 67.39 0.78 1.27 16 6 C -0.27 -4.96 6.31 -18.99 -0.12 -5.08 16 7 C 0.59 12.89 7.58 86.65 0.66 13.55 16 8 O -0.57 -18.03 12.79 -4.08 -0.05 -18.08 16 9 N -0.68 -9.09 5.56 -426.08 -2.37 -11.46 16 10 C 0.07 1.14 2.23 3.62 0.01 1.14 16 11 C 0.14 3.61 5.42 86.38 0.47 4.08 16 12 N -0.70 -18.48 5.51 -463.07 -2.55 -21.04 16 13 C 0.53 19.74 7.85 87.66 0.69 20.43 16 14 O -0.57 -26.42 15.86 -3.03 -0.05 -26.47 16 15 C -0.11 -4.18 6.16 71.24 0.44 -3.74 16 16 S -0.18 -9.34 18.55 -56.49 -1.05 -10.39 16 17 C -0.53 -31.09 10.04 67.95 0.68 -30.41 16 18 H 0.06 3.96 8.03 -2.91 -0.02 3.94 16 19 C 0.05 2.80 5.50 84.86 0.47 3.27 16 20 N -0.92 -56.18 13.97 21.65 0.30 -55.88 16 21 Si 0.91 45.87 27.74 68.60 1.90 47.77 16 22 H -0.26 -12.75 7.11 99.48 0.71 -12.04 16 23 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 24 H -0.24 -12.21 6.74 99.48 0.67 -11.54 16 25 C -0.14 -1.19 10.10 30.59 0.31 -0.88 16 26 C -0.17 -2.03 10.11 30.62 0.31 -1.72 16 27 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.05 1.42 6.92 -2.39 -0.02 1.40 16 30 H 0.24 1.22 8.06 -2.91 -0.02 1.19 16 31 H 0.26 -0.31 7.49 -2.91 -0.02 -0.33 16 32 H 0.42 1.89 7.77 -92.71 -0.72 1.17 16 33 H 0.07 2.57 5.22 -2.39 -0.01 2.56 16 34 H 0.07 1.90 7.94 -2.39 -0.02 1.88 16 35 H 0.41 7.83 8.48 -92.71 -0.79 7.04 16 36 H 0.12 4.11 8.14 -2.40 -0.02 4.09 16 37 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 38 H 0.28 15.71 8.31 -92.71 -0.77 14.94 16 39 H 0.14 0.33 8.14 -2.39 -0.02 0.31 16 40 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.10 1.36 8.08 -2.39 -0.02 1.34 16 Total: -1.00 -88.35 375.99 1.80 -86.55 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -0.47 Total: 13.15 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: 6.08 Total: -2.08 kcal Atomic # 7 Polarization: -83.76 SS G_CDS: -4.62 Total: -88.38 kcal Atomic # 8 Polarization: -46.58 SS G_CDS: -0.05 Total: -46.63 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.90 Total: 47.77 kcal Atomic # 16 Polarization: -9.34 SS G_CDS: -1.05 Total: -10.39 kcal Total: -88.35 1.80 -86.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689570923.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.989 kcal (2) G-P(sol) polarization free energy of solvation -88.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds