Wall clock time and date at job start Tue Mar 31 2020 20:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40364 * 126.64740 * 2 1 4 4 C 1.35126 * 107.11227 * 179.97438 * 3 2 1 5 5 O 1.33932 * 108.76968 * 359.77214 * 4 3 2 6 6 C 1.34912 * 109.38068 * 0.37646 * 5 4 3 7 7 C 1.46656 * 125.98392 * 179.89093 * 6 5 4 8 8 O 1.21696 * 120.00157 * 179.69259 * 7 6 5 9 9 N 1.34777 * 120.00260 * 359.40961 * 7 6 5 10 10 C 1.46496 * 120.00345 * 179.97438 * 9 7 6 11 11 C 1.50703 * 109.47318 * 180.02562 * 10 9 7 12 12 C 1.31001 * 120.00266 * 125.00414 * 11 10 9 13 13 C 1.50690 * 120.00132 * 180.02562 * 12 11 10 14 14 N 1.46501 * 109.47528 * 124.99685 * 13 12 11 15 15 C 1.34771 * 120.00486 * 179.97438 * 14 13 12 16 16 O 1.21276 * 120.00051 * 0.02562 * 15 14 13 17 17 C 1.50706 * 120.00244 * 179.97438 * 15 14 13 18 18 S 1.80992 * 109.47205 * 179.97438 * 17 15 14 19 19 C 1.76204 * 100.00235 * 179.97438 * 18 17 15 20 20 H 1.08002 * 119.99603 * 0.02562 * 19 18 17 21 21 C 1.38791 * 120.00208 * 179.97438 * 19 18 17 22 22 N 1.31632 * 120.00218 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00207 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46711 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47028 * 119.99827 * 23 21 19 26 26 H 1.48499 * 109.47220 * 240.00628 * 23 21 19 27 27 H 1.08999 * 109.47418 * 270.00831 * 1 2 3 28 28 H 1.09003 * 109.46868 * 30.00012 * 1 2 3 29 29 H 1.08994 * 109.47636 * 150.00116 * 1 2 3 30 30 H 1.07997 * 126.44111 * 0.03203 * 3 2 1 31 31 H 1.08001 * 125.61535 * 180.02562 * 4 3 2 32 32 H 0.97004 * 119.99652 * 0.02562 * 9 7 6 33 33 H 1.09007 * 109.47419 * 300.00461 * 10 9 7 34 34 H 1.09005 * 109.47301 * 60.00612 * 10 9 7 35 35 H 1.07998 * 120.00157 * 305.00115 * 11 10 9 36 36 H 1.08006 * 119.99798 * 359.97438 * 12 11 10 37 37 H 1.09004 * 109.47305 * 244.99583 * 13 12 11 38 38 H 1.08996 * 109.47193 * 4.99771 * 13 12 11 39 39 H 0.97005 * 119.99566 * 0.02562 * 14 13 12 40 40 H 1.08994 * 109.47012 * 300.00467 * 17 15 14 41 41 H 1.09001 * 109.46531 * 59.99848 * 17 15 14 42 42 H 0.97001 * 120.00401 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6743 0.0006 5 8 3.6004 -0.6649 0.0060 6 6 2.3219 -1.0955 0.0006 7 6 1.8841 -2.4952 0.0016 8 8 0.6966 -2.7614 0.0020 9 7 2.7969 -3.4868 -0.0036 10 6 2.3596 -4.8850 -0.0020 11 6 3.5657 -5.7886 -0.0080 12 6 3.7042 -6.7025 0.9203 13 6 4.9104 -7.6056 0.9146 14 7 5.5903 -7.5207 2.2095 15 6 6.7022 -8.2479 2.4359 16 8 7.1403 -8.9722 1.5674 17 6 7.4019 -8.1601 3.7678 18 16 8.8498 -9.2461 3.7615 19 6 9.4587 -8.9538 5.3889 20 1 8.9423 -8.2672 6.0434 21 6 10.6013 -9.6065 5.8300 22 7 11.2305 -10.4436 5.0324 23 14 11.2465 -9.2972 7.5556 24 1 10.3659 -8.3205 8.2454 25 1 11.2613 -10.5734 8.3147 26 1 12.6253 -8.7511 7.4781 27 1 -0.3634 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3634 -0.8899 -0.5138 30 1 2.0307 2.1594 0.0005 31 1 4.5046 1.2915 0.0011 32 1 3.7435 -3.2747 -0.0076 33 1 1.7653 -5.0789 0.8910 34 1 1.7562 -5.0781 -0.8890 35 1 4.3159 -5.6828 -0.7777 36 1 2.9541 -6.8081 1.6902 37 1 4.5940 -8.6335 0.7371 38 1 5.5937 -7.2943 0.1245 39 1 5.2397 -6.9416 2.9043 40 1 7.7188 -7.1324 3.9446 41 1 6.7186 -8.4707 4.5582 42 1 12.0289 -10.9001 5.3408 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721792157.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:56 Heat of formation + Delta-G solvation = -47.419669 kcal Electronic energy + Delta-G solvation = -24306.683058 eV Core-core repulsion = 20380.062689 eV Total energy + Delta-G solvation = -3926.620369 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.17179 -39.90775 -39.22048 -36.77447 -35.15347 -34.41263 -32.96138 -32.44280 -31.00925 -29.80622 -28.43499 -27.20111 -25.51312 -24.33488 -22.93391 -21.64558 -20.88476 -20.49439 -19.82797 -18.56594 -17.88955 -16.90091 -16.70637 -16.53830 -16.25314 -16.00942 -15.51194 -15.25266 -14.82069 -14.79751 -14.10984 -14.04474 -13.94889 -13.79350 -13.48642 -13.46786 -13.13828 -13.00247 -12.82764 -12.74893 -12.51521 -12.25892 -11.81779 -11.57785 -11.08309 -11.03537 -10.77451 -10.68263 -10.18708 -10.04858 -9.82159 -9.62704 -9.36251 -9.09356 -9.04456 -8.91572 -8.25153 -6.51809 -6.23301 -3.93992 0.58458 1.43765 1.86118 2.26200 2.71293 2.88853 3.05398 3.07185 3.20497 3.27873 3.33395 3.75078 4.17526 4.18822 4.22765 4.29535 4.44261 4.58145 4.92180 5.00554 5.04775 5.05911 5.12022 5.16083 5.20840 5.30212 5.31379 5.39982 5.53675 5.57511 5.66190 5.74102 5.78882 5.86673 5.97094 6.11671 6.12554 6.21878 6.35426 6.56016 6.98039 7.58436 7.60666 7.65662 8.33956 8.56387 9.22235 10.84181 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.015451 B = 0.001581 C = 0.001477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.746416 B =17711.026633 C =18949.626522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.084 4.084 3 C -0.227 4.227 4 C 0.001 3.999 5 O -0.163 6.163 6 C -0.091 4.091 7 C 0.605 3.395 8 O -0.519 6.519 9 N -0.717 5.717 10 C 0.150 3.850 11 C -0.167 4.167 12 C -0.138 4.138 13 C 0.147 3.853 14 N -0.737 5.737 15 C 0.532 3.468 16 O -0.517 6.517 17 C -0.153 4.153 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.157 0.843 31 H 0.212 0.788 32 H 0.408 0.592 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.399 0.601 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.817 22.585 -11.176 32.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.086 4.086 3 C -0.246 4.246 4 C -0.069 4.069 5 O -0.059 6.059 6 C -0.143 4.143 7 C 0.392 3.608 8 O -0.397 6.397 9 N -0.368 5.368 10 C 0.028 3.972 11 C -0.187 4.187 12 C -0.157 4.157 13 C 0.023 3.977 14 N -0.392 5.392 15 C 0.318 3.682 16 O -0.391 6.391 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.206 1.206 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.174 0.826 31 H 0.228 0.772 32 H 0.243 0.757 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.233 0.767 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -20.543 20.793 -12.663 31.854 hybrid contribution 0.253 1.693 2.427 2.970 sum -20.290 22.486 -10.236 31.970 Atomic orbital electron populations 1.20447 0.88125 1.03672 1.03032 1.20680 0.97739 0.91004 0.99225 1.21782 0.92436 1.00274 1.10120 1.24424 1.00093 0.80496 1.01867 1.84067 1.28209 1.22829 1.70781 1.21784 0.81660 0.94679 1.16166 1.16500 0.85659 0.81855 0.76830 1.90862 1.15683 1.82395 1.50752 1.45892 1.10255 1.05922 1.74758 1.20413 0.95051 0.78520 1.03254 1.22902 0.98830 0.96820 1.00107 1.23080 0.98003 0.96185 0.98437 1.20298 0.91322 0.99346 0.86720 1.45976 1.28811 1.48201 1.16168 1.20339 0.79546 0.78871 0.89458 1.90707 1.64349 1.38087 1.45973 1.23531 1.04204 1.06454 0.96193 1.85403 1.23504 1.54233 1.20266 1.22910 1.14618 1.31295 0.99539 0.90853 1.24994 0.95623 0.94494 0.98479 1.70027 1.18340 1.26154 1.35751 0.86113 0.78699 0.78234 0.82426 1.19621 1.20547 1.20564 0.90661 0.91379 0.89465 0.82552 0.77166 0.75652 0.90466 0.90023 0.86008 0.86188 0.90406 0.90998 0.76680 0.89182 0.89161 0.92220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.70 9.81 36.01 0.35 -0.35 16 2 C -0.08 -0.70 6.20 -104.44 -0.65 -1.34 16 3 C -0.23 -1.39 10.83 -39.89 -0.43 -1.83 16 4 C 0.00 0.01 12.08 29.63 0.36 0.36 16 5 O -0.16 -1.27 10.40 5.00 0.05 -1.22 16 6 C -0.09 -0.83 7.13 -36.80 -0.26 -1.09 16 7 C 0.60 5.92 7.79 -12.86 -0.10 5.82 16 8 O -0.52 -6.29 14.74 5.19 0.08 -6.21 16 9 N -0.72 -5.42 5.54 -62.80 -0.35 -5.77 16 10 C 0.15 1.04 6.11 -5.19 -0.03 1.00 16 11 C -0.17 -1.08 9.24 -36.02 -0.33 -1.42 16 12 C -0.14 -1.01 9.24 -36.03 -0.33 -1.34 16 13 C 0.15 1.55 6.11 -5.20 -0.03 1.52 16 14 N -0.74 -9.30 5.55 -61.48 -0.34 -9.64 16 15 C 0.53 9.68 7.85 -10.98 -0.09 9.59 16 16 O -0.52 -11.55 15.86 5.56 0.09 -11.47 16 17 C -0.15 -3.03 6.16 36.01 0.22 -2.81 16 18 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 19 C -0.54 -15.17 9.50 30.94 0.29 -14.88 16 20 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.05 13.22 55.49 0.73 -25.31 16 23 Si 0.92 21.29 29.55 -169.99 -5.02 16.27 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 0.76 6.45 -51.93 -0.33 0.43 16 30 H 0.16 0.59 8.06 -52.49 -0.42 0.17 16 31 H 0.21 0.29 8.06 -52.49 -0.42 -0.13 16 32 H 0.41 2.53 8.22 -40.82 -0.34 2.20 16 33 H 0.08 0.55 7.79 -51.93 -0.40 0.15 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.12 0.74 7.84 -52.49 -0.41 0.33 16 36 H 0.12 0.76 7.84 -52.48 -0.41 0.34 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.07 0.81 7.79 -51.93 -0.40 0.40 16 39 H 0.40 3.91 8.46 -40.82 -0.35 3.56 16 40 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 41 H 0.09 1.65 8.14 -51.91 -0.42 1.22 16 42 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 385.76 15.07 5.81 5.81 Total: -1.00 -36.73 385.76 -7.86 -44.59 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -5.57 Total: 1.56 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -1.13 Total: -4.78 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 0.04 Total: -40.72 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: 0.22 Total: -18.90 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.73 -7.86 -44.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721792157.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.825 kcal (2) G-P(sol) polarization free energy of solvation -36.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds