Wall clock time and date at job start Tue Mar 31 2020 20:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40364 * 126.64740 * 2 1 4 4 C 1.35126 * 107.11227 * 179.97438 * 3 2 1 5 5 O 1.33932 * 108.76968 * 359.77214 * 4 3 2 6 6 C 1.34912 * 109.38068 * 0.37646 * 5 4 3 7 7 C 1.46656 * 125.98392 * 179.89093 * 6 5 4 8 8 O 1.21696 * 120.00157 * 179.69259 * 7 6 5 9 9 N 1.34777 * 120.00260 * 359.40961 * 7 6 5 10 10 C 1.46496 * 120.00345 * 179.97438 * 9 7 6 11 11 C 1.50703 * 109.47318 * 180.02562 * 10 9 7 12 12 C 1.31001 * 120.00266 * 125.00414 * 11 10 9 13 13 C 1.50690 * 120.00132 * 180.02562 * 12 11 10 14 14 N 1.46501 * 109.47528 * 124.99685 * 13 12 11 15 15 C 1.34771 * 120.00486 * 179.97438 * 14 13 12 16 16 O 1.21276 * 120.00051 * 0.02562 * 15 14 13 17 17 C 1.50706 * 120.00244 * 179.97438 * 15 14 13 18 18 S 1.80992 * 109.47205 * 179.97438 * 17 15 14 19 19 C 1.76204 * 100.00235 * 179.97438 * 18 17 15 20 20 H 1.08002 * 119.99603 * 0.02562 * 19 18 17 21 21 C 1.38791 * 120.00208 * 179.97438 * 19 18 17 22 22 N 1.31632 * 120.00218 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00207 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46711 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47028 * 119.99827 * 23 21 19 26 26 H 1.48499 * 109.47220 * 240.00628 * 23 21 19 27 27 H 1.08999 * 109.47418 * 270.00831 * 1 2 3 28 28 H 1.09003 * 109.46868 * 30.00012 * 1 2 3 29 29 H 1.08994 * 109.47636 * 150.00116 * 1 2 3 30 30 H 1.07997 * 126.44111 * 0.03203 * 3 2 1 31 31 H 1.08001 * 125.61535 * 180.02562 * 4 3 2 32 32 H 0.97004 * 119.99652 * 0.02562 * 9 7 6 33 33 H 1.09007 * 109.47419 * 300.00461 * 10 9 7 34 34 H 1.09005 * 109.47301 * 60.00612 * 10 9 7 35 35 H 1.07998 * 120.00157 * 305.00115 * 11 10 9 36 36 H 1.08006 * 119.99798 * 359.97438 * 12 11 10 37 37 H 1.09004 * 109.47305 * 244.99583 * 13 12 11 38 38 H 1.08996 * 109.47193 * 4.99771 * 13 12 11 39 39 H 0.97005 * 119.99566 * 0.02562 * 14 13 12 40 40 H 1.08994 * 109.47012 * 300.00467 * 17 15 14 41 41 H 1.09001 * 109.46531 * 59.99848 * 17 15 14 42 42 H 0.97001 * 120.00401 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6743 0.0006 5 8 3.6004 -0.6649 0.0060 6 6 2.3219 -1.0955 0.0006 7 6 1.8841 -2.4952 0.0016 8 8 0.6966 -2.7614 0.0020 9 7 2.7969 -3.4868 -0.0036 10 6 2.3596 -4.8850 -0.0020 11 6 3.5657 -5.7886 -0.0080 12 6 3.7042 -6.7025 0.9203 13 6 4.9104 -7.6056 0.9146 14 7 5.5903 -7.5207 2.2095 15 6 6.7022 -8.2479 2.4359 16 8 7.1403 -8.9722 1.5674 17 6 7.4019 -8.1601 3.7678 18 16 8.8498 -9.2461 3.7615 19 6 9.4587 -8.9538 5.3889 20 1 8.9423 -8.2672 6.0434 21 6 10.6013 -9.6065 5.8300 22 7 11.2305 -10.4436 5.0324 23 14 11.2465 -9.2972 7.5556 24 1 10.3659 -8.3205 8.2454 25 1 11.2613 -10.5734 8.3147 26 1 12.6253 -8.7511 7.4781 27 1 -0.3634 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3634 -0.8899 -0.5138 30 1 2.0307 2.1594 0.0005 31 1 4.5046 1.2915 0.0011 32 1 3.7435 -3.2747 -0.0076 33 1 1.7653 -5.0789 0.8910 34 1 1.7562 -5.0781 -0.8890 35 1 4.3159 -5.6828 -0.7777 36 1 2.9541 -6.8081 1.6902 37 1 4.5940 -8.6335 0.7371 38 1 5.5937 -7.2943 0.1245 39 1 5.2397 -6.9416 2.9043 40 1 7.7188 -7.1324 3.9446 41 1 6.7186 -8.4707 4.5582 42 1 12.0289 -10.9001 5.3408 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001721792157.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:55 Heat of formation + Delta-G solvation = -74.432569 kcal Electronic energy + Delta-G solvation = -24307.854426 eV Core-core repulsion = 20380.062689 eV Total energy + Delta-G solvation = -3927.791737 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.68536 -40.67317 -40.53160 -37.55532 -36.04978 -35.03551 -34.58348 -33.87980 -31.64056 -31.03238 -29.20086 -28.03317 -27.59509 -25.12891 -23.51642 -22.18184 -21.87971 -21.40463 -20.56644 -19.79293 -19.14321 -17.86783 -17.50117 -17.44336 -17.10012 -16.93075 -16.87495 -16.61322 -16.09169 -15.82911 -15.50424 -14.98743 -14.86199 -14.51423 -14.47294 -14.36304 -14.04486 -13.90973 -13.79682 -13.53666 -13.38660 -13.18956 -13.15649 -12.90838 -12.80397 -12.60094 -12.22837 -11.70931 -11.39685 -11.15744 -11.10516 -10.69315 -10.58574 -10.27695 -10.26014 -10.00173 -9.57576 -8.66395 -8.34679 -6.12651 0.00148 0.79059 1.29807 1.39363 1.41680 1.49109 1.59914 1.60834 1.74017 2.04310 2.27001 2.31585 2.43465 2.99661 3.33150 3.53440 3.73006 3.80586 3.94049 3.98720 4.00978 4.27813 4.32361 4.51496 4.51844 4.52322 4.53026 4.62239 4.65617 4.74937 4.77441 4.82828 5.09922 5.12028 5.23235 5.35094 5.42560 5.44701 5.54150 5.66200 5.84119 6.20311 6.37646 6.50106 6.95334 7.06930 7.23524 8.74773 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.015451 B = 0.001581 C = 0.001477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.746416 B =17711.026633 C =18949.626522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.095 4.095 3 C -0.238 4.238 4 C 0.013 3.987 5 O -0.172 6.172 6 C -0.122 4.122 7 C 0.601 3.399 8 O -0.552 6.552 9 N -0.709 5.709 10 C 0.151 3.849 11 C -0.148 4.148 12 C -0.137 4.137 13 C 0.146 3.854 14 N -0.710 5.710 15 C 0.533 3.467 16 O -0.566 6.566 17 C -0.130 4.130 18 S -0.152 6.152 19 C -0.546 4.546 20 H 0.083 0.917 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 0.999 3.001 24 H -0.257 1.257 25 H -0.274 1.274 26 H -0.274 1.274 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.180 0.820 31 H 0.252 0.748 32 H 0.415 0.585 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.129 0.871 36 H 0.136 0.864 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.417 0.583 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.421 25.179 -10.056 34.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.099 4.099 3 C -0.257 4.257 4 C -0.056 4.056 5 O -0.067 6.067 6 C -0.173 4.173 7 C 0.388 3.612 8 O -0.433 6.433 9 N -0.359 5.359 10 C 0.029 3.971 11 C -0.167 4.167 12 C -0.157 4.157 13 C 0.023 3.977 14 N -0.364 5.364 15 C 0.319 3.681 16 O -0.444 6.444 17 C -0.281 4.281 18 S 0.075 5.925 19 C -0.694 4.694 20 H 0.101 0.899 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.180 1.180 25 H -0.200 1.200 26 H -0.199 1.199 27 H 0.094 0.906 28 H 0.105 0.895 29 H 0.086 0.914 30 H 0.197 0.803 31 H 0.268 0.732 32 H 0.252 0.748 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.147 0.853 36 H 0.154 0.846 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.254 0.746 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.178 23.422 -11.537 33.619 hybrid contribution 0.347 1.020 1.978 2.252 sum -20.831 24.442 -9.559 33.508 Atomic orbital electron populations 1.20431 0.87962 1.03646 1.03071 1.21038 0.98295 0.91849 0.98672 1.22108 0.92381 1.00815 1.10351 1.25305 1.01402 0.79723 0.99180 1.84057 1.27543 1.24135 1.71006 1.21707 0.82467 0.94570 1.18544 1.16673 0.85456 0.82572 0.76459 1.90835 1.16905 1.83019 1.52535 1.45842 1.10393 1.05833 1.73878 1.20409 0.95124 0.78221 1.03341 1.22877 0.98398 0.95795 0.99634 1.22865 0.97166 0.95999 0.99621 1.20380 0.92206 0.99877 0.85191 1.45722 1.26754 1.46439 1.17490 1.20069 0.80635 0.79104 0.88275 1.90696 1.66100 1.40543 1.47110 1.23376 1.01211 1.05419 0.98100 1.85578 1.28230 1.57521 1.21194 1.23245 1.15049 1.31482 0.99604 0.89873 1.26122 0.95794 0.93962 1.03266 1.70188 1.18984 1.27406 1.38201 0.84905 0.78139 0.78482 0.76414 1.18027 1.19970 1.19935 0.90561 0.89454 0.91379 0.80257 0.73202 0.74815 0.90429 0.90018 0.85345 0.84617 0.91185 0.91494 0.74582 0.87134 0.87160 0.91994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.36 9.81 71.24 0.70 -0.66 16 2 C -0.10 -1.52 6.20 -19.74 -0.12 -1.64 16 3 C -0.24 -2.41 10.83 22.07 0.24 -2.17 16 4 C 0.01 0.11 12.08 67.10 0.81 0.92 16 5 O -0.17 -2.42 10.40 -5.02 -0.05 -2.47 16 6 C -0.12 -2.16 7.13 24.07 0.17 -1.99 16 7 C 0.60 11.73 7.79 86.44 0.67 12.40 16 8 O -0.55 -13.72 14.74 -4.34 -0.06 -13.79 16 9 N -0.71 -10.07 5.54 -470.83 -2.61 -12.68 16 10 C 0.15 1.89 6.11 85.63 0.52 2.41 16 11 C -0.15 -1.61 9.24 25.65 0.24 -1.38 16 12 C -0.14 -1.70 9.24 25.64 0.24 -1.46 16 13 C 0.15 2.88 6.11 85.63 0.52 3.40 16 14 N -0.71 -16.55 5.55 -466.81 -2.59 -19.14 16 15 C 0.53 19.02 7.85 87.66 0.69 19.70 16 16 O -0.57 -25.71 15.86 -3.02 -0.05 -25.76 16 17 C -0.13 -5.01 6.16 71.24 0.44 -4.58 16 18 S -0.15 -8.39 20.57 -56.49 -1.16 -9.55 16 19 C -0.55 -30.96 9.50 67.95 0.65 -30.32 16 20 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 21 C 0.01 0.75 5.49 84.86 0.47 1.22 16 22 N -0.91 -55.74 13.22 21.65 0.29 -55.46 16 23 Si 1.00 43.30 29.55 68.60 2.03 45.33 16 24 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 25 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 26 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 27 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.07 1.25 6.45 -2.39 -0.02 1.23 16 30 H 0.18 0.85 8.06 -2.91 -0.02 0.82 16 31 H 0.25 -0.32 8.06 -2.91 -0.02 -0.34 16 32 H 0.42 4.62 8.22 -92.71 -0.76 3.86 16 33 H 0.08 1.00 7.79 -2.38 -0.02 0.98 16 34 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.13 1.29 7.84 -2.91 -0.02 1.26 16 36 H 0.14 1.32 7.84 -2.91 -0.02 1.30 16 37 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.07 1.43 7.79 -2.39 -0.02 1.41 16 39 H 0.42 6.90 8.46 -92.70 -0.78 6.12 16 40 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16 41 H 0.11 3.82 8.14 -2.40 -0.02 3.80 16 42 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -82.95 385.76 1.54 -81.41 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -0.48 Total: 16.24 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: 6.23 Total: -4.13 kcal Atomic # 7 Polarization: -82.36 SS G_CDS: -4.91 Total: -87.28 kcal Atomic # 8 Polarization: -41.85 SS G_CDS: -0.16 Total: -42.02 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.16 Total: -9.55 kcal Total: -82.95 1.54 -81.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721792157.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.982 kcal (2) G-P(sol) polarization free energy of solvation -82.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds