Wall clock time and date at job start Tue Mar 31 2020 20:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40367 * 126.64475 * 2 1 4 4 C 1.35135 * 107.11106 * 180.22300 * 3 2 1 5 5 O 1.33931 * 108.76738 * 359.77623 * 4 3 2 6 6 C 1.34906 * 109.38837 * 0.02562 * 5 4 3 7 7 C 1.46651 * 125.99018 * 179.97438 * 6 5 4 8 8 O 1.21698 * 120.00235 * 180.02562 * 7 6 5 9 9 N 1.34783 * 120.00215 * 0.02562 * 7 6 5 10 10 C 1.47580 * 134.48770 * 5.03666 * 9 7 6 11 11 C 1.53942 * 86.11494 * 204.63964 * 10 9 7 12 12 C 1.47579 * 134.49400 * 185.03628 * 9 7 6 13 13 H 1.09001 * 113.86915 * 269.67054 * 12 9 7 14 14 C 1.52995 * 113.76845 * 41.06040 * 12 9 7 15 15 N 1.46502 * 109.47252 * 279.21840 * 14 12 9 16 16 C 1.34770 * 120.00320 * 174.84467 * 15 14 12 17 17 O 1.21287 * 120.00073 * 0.02562 * 16 15 14 18 18 C 1.50704 * 120.00416 * 180.02562 * 16 15 14 19 19 S 1.80999 * 109.47474 * 180.02562 * 18 16 15 20 20 C 1.76196 * 100.00206 * 179.97438 * 19 18 16 21 21 H 1.07998 * 119.99863 * 359.97438 * 20 19 18 22 22 C 1.38796 * 120.00062 * 180.27734 * 20 19 18 23 23 N 1.31627 * 120.00195 * 359.71762 * 22 20 19 24 24 Si 1.86803 * 119.99896 * 179.72302 * 22 20 19 25 25 H 1.48501 * 109.47003 * 59.99822 * 24 22 20 26 26 H 1.48499 * 109.47010 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47188 * 299.99762 * 24 22 20 28 28 H 1.09001 * 109.47084 * 270.15859 * 1 2 3 29 29 H 1.09000 * 109.47195 * 30.15628 * 1 2 3 30 30 H 1.08995 * 109.47229 * 150.15862 * 1 2 3 31 31 H 1.07997 * 126.44306 * 0.02562 * 3 2 1 32 32 H 1.07999 * 125.61458 * 179.77962 * 4 3 2 33 33 H 1.09001 * 113.76825 * 90.33815 * 10 9 7 34 34 H 1.08996 * 113.87130 * 318.95286 * 10 9 7 35 35 H 1.08997 * 113.74590 * 222.04990 * 11 10 9 36 36 H 1.09001 * 113.83891 * 90.75042 * 11 10 9 37 37 H 1.09003 * 109.47318 * 159.22181 * 14 12 9 38 38 H 1.08996 * 109.47556 * 39.22227 * 14 12 9 39 39 H 0.97006 * 119.99606 * 354.84621 * 15 14 12 40 40 H 1.08994 * 109.47229 * 59.99488 * 18 16 15 41 41 H 1.09003 * 109.46666 * 299.99623 * 18 16 15 42 42 H 0.96999 * 120.00208 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6744 -0.0050 5 8 3.6004 -0.6648 -0.0031 6 6 2.3220 -1.0956 0.0025 7 6 1.8843 -2.4952 0.0057 8 8 0.6968 -2.7614 0.0103 9 7 2.7971 -3.4869 0.0034 10 6 4.2695 -3.5374 0.0904 11 6 4.1616 -4.8893 -0.6380 12 6 2.7257 -4.9582 -0.0872 13 1 2.6494 -5.4564 0.8793 14 6 1.6993 -5.4644 -1.1026 15 7 0.3626 -5.4307 -0.5041 16 6 -0.7178 -5.7347 -1.2502 17 8 -0.5833 -6.0367 -2.4172 18 6 -2.0929 -5.6995 -0.6347 19 16 -3.3239 -6.1537 -1.8814 20 6 -4.7941 -6.0342 -0.9176 21 1 -4.7363 -5.7485 0.1223 22 6 -6.0258 -6.3134 -1.4932 23 7 -6.0963 -6.6620 -2.7605 24 14 -7.5837 -6.1943 -0.4693 25 1 -7.7335 -4.8091 0.0447 26 1 -8.7572 -6.5388 -1.3116 27 1 -7.4989 -7.1396 0.6728 28 1 -0.3633 0.0028 1.0277 29 1 -0.3633 0.8886 -0.5163 30 1 -0.3633 -0.8914 -0.5113 31 1 2.0306 2.1595 0.0004 32 1 4.5046 1.2916 -0.0097 33 1 4.6468 -3.6165 1.1099 34 1 4.7724 -2.7643 -0.4904 35 1 4.8226 -5.6577 -0.2373 36 1 4.2117 -4.8098 -1.7240 37 1 1.9441 -6.4877 -1.3874 38 1 1.7178 -4.8270 -1.9866 39 1 0.2551 -5.1895 0.4294 40 1 -2.3009 -4.6946 -0.2673 41 1 -2.1381 -6.4060 0.1942 42 1 -6.9571 -6.8568 -3.1628 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721993665.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:23 Heat of formation + Delta-G solvation = -18.273121 kcal Electronic energy + Delta-G solvation = -26522.759065 eV Core-core repulsion = 22597.402585 eV Total energy + Delta-G solvation = -3925.356480 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.97865 -40.66219 -38.75444 -37.98436 -34.36242 -34.21102 -32.34116 -31.28225 -30.12605 -29.71433 -27.64038 -27.52448 -25.39036 -23.71501 -23.35332 -22.00215 -20.81872 -20.19336 -19.30514 -18.08536 -17.68493 -16.82147 -16.61704 -16.35914 -16.18016 -15.94510 -14.98769 -14.93818 -14.72433 -14.26502 -14.13535 -13.82743 -13.73243 -13.32475 -13.22122 -13.02408 -12.80695 -12.77613 -12.66531 -12.51550 -12.31859 -11.96970 -11.86282 -11.57763 -11.36130 -10.97045 -10.95260 -10.68674 -10.15355 -9.98204 -9.72610 -9.22000 -9.17492 -8.97660 -8.80841 -8.66198 -8.12090 -6.38655 -6.12789 -3.81924 0.80220 2.04655 2.21357 2.63234 2.96626 3.16707 3.29377 3.31283 3.33453 3.39791 3.79076 4.03543 4.11947 4.29512 4.48070 4.50926 4.55386 4.62716 4.78985 4.91293 5.01250 5.14742 5.21893 5.22262 5.27551 5.30235 5.33443 5.51592 5.60525 5.61162 5.70165 5.80215 5.84786 5.94723 5.97390 6.08142 6.24081 6.33346 6.60085 6.79050 7.29466 7.68224 7.83133 7.92993 8.44299 8.81666 9.32258 10.94693 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.013956 B = 0.002734 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.780457 B =10238.128499 C =11783.003646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.084 4.084 3 C -0.224 4.224 4 C -0.010 4.010 5 O -0.164 6.164 6 C -0.081 4.081 7 C 0.620 3.380 8 O -0.494 6.494 9 N -0.640 5.640 10 C 0.105 3.895 11 C -0.143 4.143 12 C 0.127 3.873 13 H 0.103 0.897 14 C 0.122 3.878 15 N -0.724 5.724 16 C 0.537 3.463 17 O -0.526 6.526 18 C -0.149 4.149 19 S -0.062 6.062 20 C -0.533 4.533 21 H 0.071 0.929 22 C 0.073 3.927 23 N -0.869 5.869 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.155 0.845 32 H 0.209 0.791 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.400 0.600 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.134 12.428 9.471 31.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.086 4.086 3 C -0.243 4.243 4 C -0.080 4.080 5 O -0.059 6.059 6 C -0.132 4.132 7 C 0.409 3.591 8 O -0.370 6.370 9 N -0.377 5.377 10 C -0.018 4.018 11 C -0.182 4.182 12 C 0.025 3.975 13 H 0.121 0.879 14 C -0.003 4.003 15 N -0.379 5.379 16 C 0.323 3.677 17 O -0.402 6.402 18 C -0.300 4.300 19 S 0.165 5.835 20 C -0.681 4.681 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.505 5.505 24 Si 0.744 3.256 25 H -0.200 1.200 26 H -0.209 1.209 27 H -0.200 1.200 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.173 0.827 32 H 0.225 0.775 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.111 0.889 36 H 0.118 0.882 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.234 0.766 40 H 0.109 0.891 41 H 0.105 0.895 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 26.677 11.670 7.361 30.034 hybrid contribution -1.113 1.051 2.557 2.980 sum 25.564 12.722 9.918 30.228 Atomic orbital electron populations 1.20472 0.87874 1.04121 1.03039 1.20720 0.97878 0.90904 0.99143 1.21777 0.92476 1.00242 1.09786 1.24336 0.99909 0.80781 1.02989 1.84069 1.28440 1.22486 1.70946 1.21807 0.81399 0.94488 1.15554 1.16184 0.84854 0.81096 0.76929 1.90943 1.14805 1.81586 1.49661 1.50065 1.07797 1.06429 1.73362 1.23186 0.80199 0.97483 1.00924 1.23576 0.94990 0.97419 1.02189 1.23179 0.95291 0.79617 0.99437 0.87900 1.21396 0.81771 1.01492 0.95638 1.45779 1.05342 1.72016 1.14717 1.20194 0.85619 0.75519 0.86321 1.90679 1.86272 1.46822 1.16384 1.23489 0.96027 1.05193 1.05306 1.85323 0.96092 1.89175 1.12949 1.22841 0.92536 1.53769 0.98971 0.91045 1.24981 0.98723 0.94655 0.95258 1.70015 1.25824 1.43431 1.11191 0.86238 0.80994 0.78715 0.79626 1.19960 1.20864 1.19988 0.90689 0.91338 0.89091 0.82686 0.77452 0.89425 0.89460 0.88900 0.88240 0.90316 0.91033 0.76602 0.89106 0.89548 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.15 9.81 36.00 0.35 -0.80 16 2 C -0.08 -0.96 6.20 -104.43 -0.65 -1.61 16 3 C -0.22 -1.90 10.83 -39.88 -0.43 -2.34 16 4 C -0.01 -0.07 12.08 29.63 0.36 0.28 16 5 O -0.16 -1.54 9.04 5.02 0.05 -1.49 16 6 C -0.08 -0.96 7.07 -36.80 -0.26 -1.22 16 7 C 0.62 8.15 7.88 -12.86 -0.10 8.05 16 8 O -0.49 -8.00 13.35 5.19 0.07 -7.93 16 9 N -0.64 -6.37 3.49 -172.77 -0.60 -6.98 16 10 C 0.10 0.63 8.03 -2.98 -0.02 0.60 16 11 C -0.14 -0.75 7.86 -25.81 -0.20 -0.96 16 12 C 0.13 1.08 4.27 -66.87 -0.29 0.79 16 13 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 14 C 0.12 1.52 5.33 -4.04 -0.02 1.50 16 15 N -0.72 -11.27 4.28 -60.29 -0.26 -11.53 16 16 C 0.54 11.17 7.85 -10.99 -0.09 11.08 16 17 O -0.53 -12.88 15.86 5.55 0.09 -12.79 16 18 C -0.15 -3.34 6.16 36.01 0.22 -3.12 16 19 S -0.06 -1.78 20.57 -107.50 -2.21 -3.99 16 20 C -0.53 -15.88 9.50 30.94 0.29 -15.58 16 21 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 22 C 0.07 2.15 5.49 -17.43 -0.10 2.06 16 23 N -0.87 -27.04 13.22 55.49 0.73 -26.31 16 24 Si 0.92 22.16 29.55 -169.99 -5.02 17.13 16 25 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.09 1.31 6.45 -51.93 -0.33 0.97 16 31 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.21 0.51 8.06 -52.49 -0.42 0.09 16 33 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.09 0.50 7.33 -51.93 -0.38 0.12 16 35 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.10 0.56 8.10 -51.93 -0.42 0.14 16 37 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.07 1.06 8.13 -51.93 -0.42 0.64 16 39 H 0.40 5.58 7.95 -40.82 -0.32 5.26 16 40 H 0.09 1.98 8.14 -51.92 -0.42 1.56 16 41 H 0.09 1.78 8.14 -51.91 -0.42 1.35 16 42 H 0.27 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 374.36 15.07 5.64 5.64 Total: -1.00 -38.87 374.36 -8.10 -46.97 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -5.65 Total: 2.54 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -0.93 Total: -1.26 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: -0.13 Total: -44.82 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: 0.20 Total: -22.21 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 16 Polarization: -1.78 SS G_CDS: -2.21 Total: -3.99 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -38.87 -8.10 -46.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721993665.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.695 kcal (2) G-P(sol) polarization free energy of solvation -38.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds