Wall clock time and date at job start Tue Mar 31 2020 20:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40367 * 126.64475 * 2 1 4 4 C 1.35135 * 107.11106 * 180.22300 * 3 2 1 5 5 O 1.33931 * 108.76738 * 359.77623 * 4 3 2 6 6 C 1.34906 * 109.38837 * 0.02562 * 5 4 3 7 7 C 1.46651 * 125.99018 * 179.97438 * 6 5 4 8 8 O 1.21698 * 120.00235 * 180.02562 * 7 6 5 9 9 N 1.34783 * 120.00215 * 0.02562 * 7 6 5 10 10 C 1.47580 * 134.48770 * 5.03666 * 9 7 6 11 11 C 1.53942 * 86.11494 * 204.63964 * 10 9 7 12 12 C 1.47579 * 134.49400 * 185.03628 * 9 7 6 13 13 H 1.09001 * 113.86915 * 269.67054 * 12 9 7 14 14 C 1.52995 * 113.76845 * 41.06040 * 12 9 7 15 15 N 1.46502 * 109.47252 * 279.21840 * 14 12 9 16 16 C 1.34770 * 120.00320 * 174.84467 * 15 14 12 17 17 O 1.21287 * 120.00073 * 0.02562 * 16 15 14 18 18 C 1.50704 * 120.00416 * 180.02562 * 16 15 14 19 19 S 1.80999 * 109.47474 * 180.02562 * 18 16 15 20 20 C 1.76196 * 100.00206 * 179.97438 * 19 18 16 21 21 H 1.07998 * 119.99863 * 359.97438 * 20 19 18 22 22 C 1.38796 * 120.00062 * 180.27734 * 20 19 18 23 23 N 1.31627 * 120.00195 * 359.71762 * 22 20 19 24 24 Si 1.86803 * 119.99896 * 179.72302 * 22 20 19 25 25 H 1.48501 * 109.47003 * 59.99822 * 24 22 20 26 26 H 1.48499 * 109.47010 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47188 * 299.99762 * 24 22 20 28 28 H 1.09001 * 109.47084 * 270.15859 * 1 2 3 29 29 H 1.09000 * 109.47195 * 30.15628 * 1 2 3 30 30 H 1.08995 * 109.47229 * 150.15862 * 1 2 3 31 31 H 1.07997 * 126.44306 * 0.02562 * 3 2 1 32 32 H 1.07999 * 125.61458 * 179.77962 * 4 3 2 33 33 H 1.09001 * 113.76825 * 90.33815 * 10 9 7 34 34 H 1.08996 * 113.87130 * 318.95286 * 10 9 7 35 35 H 1.08997 * 113.74590 * 222.04990 * 11 10 9 36 36 H 1.09001 * 113.83891 * 90.75042 * 11 10 9 37 37 H 1.09003 * 109.47318 * 159.22181 * 14 12 9 38 38 H 1.08996 * 109.47556 * 39.22227 * 14 12 9 39 39 H 0.97006 * 119.99606 * 354.84621 * 15 14 12 40 40 H 1.08994 * 109.47229 * 59.99488 * 18 16 15 41 41 H 1.09003 * 109.46666 * 299.99623 * 18 16 15 42 42 H 0.96999 * 120.00208 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6744 -0.0050 5 8 3.6004 -0.6648 -0.0031 6 6 2.3220 -1.0956 0.0025 7 6 1.8843 -2.4952 0.0057 8 8 0.6968 -2.7614 0.0103 9 7 2.7971 -3.4869 0.0034 10 6 4.2695 -3.5374 0.0904 11 6 4.1616 -4.8893 -0.6380 12 6 2.7257 -4.9582 -0.0872 13 1 2.6494 -5.4564 0.8793 14 6 1.6993 -5.4644 -1.1026 15 7 0.3626 -5.4307 -0.5041 16 6 -0.7178 -5.7347 -1.2502 17 8 -0.5833 -6.0367 -2.4172 18 6 -2.0929 -5.6995 -0.6347 19 16 -3.3239 -6.1537 -1.8814 20 6 -4.7941 -6.0342 -0.9176 21 1 -4.7363 -5.7485 0.1223 22 6 -6.0258 -6.3134 -1.4932 23 7 -6.0963 -6.6620 -2.7605 24 14 -7.5837 -6.1943 -0.4693 25 1 -7.7335 -4.8091 0.0447 26 1 -8.7572 -6.5388 -1.3116 27 1 -7.4989 -7.1396 0.6728 28 1 -0.3633 0.0028 1.0277 29 1 -0.3633 0.8886 -0.5163 30 1 -0.3633 -0.8914 -0.5113 31 1 2.0306 2.1595 0.0004 32 1 4.5046 1.2916 -0.0097 33 1 4.6468 -3.6165 1.1099 34 1 4.7724 -2.7643 -0.4904 35 1 4.8226 -5.6577 -0.2373 36 1 4.2117 -4.8098 -1.7240 37 1 1.9441 -6.4877 -1.3874 38 1 1.7178 -4.8270 -1.9866 39 1 0.2551 -5.1895 0.4294 40 1 -2.3009 -4.6946 -0.2673 41 1 -2.1381 -6.4060 0.1942 42 1 -6.9571 -6.8568 -3.1628 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001721993665.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:22 Heat of formation + Delta-G solvation = -46.586055 kcal Electronic energy + Delta-G solvation = -26523.986806 eV Core-core repulsion = 22597.402585 eV Total energy + Delta-G solvation = -3926.584221 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.67500 -41.47339 -40.31344 -38.87489 -35.63573 -35.10530 -34.60430 -32.16994 -31.42482 -30.59212 -28.79704 -28.38935 -27.64861 -24.53459 -24.10350 -22.63824 -21.81617 -21.45877 -20.17423 -19.78750 -18.72958 -17.88465 -17.59372 -17.50622 -17.22199 -16.90100 -16.88167 -16.43272 -16.08065 -15.71347 -15.11599 -14.97980 -14.70422 -14.61661 -14.45552 -14.12469 -14.01110 -13.83693 -13.56387 -13.39877 -13.27748 -13.19191 -13.04932 -12.87664 -12.80621 -12.66622 -12.40299 -12.08374 -11.74349 -11.14783 -11.07936 -10.90499 -10.70403 -10.32131 -10.10350 -9.94191 -9.50602 -8.69092 -8.35979 -6.14767 0.02630 1.24243 1.38718 1.42512 1.42908 1.48944 1.56305 1.62974 1.96265 2.09910 2.25602 2.34058 2.97377 3.28154 3.37207 3.55411 3.71974 3.77082 3.89252 3.95640 4.01853 4.13967 4.23986 4.32239 4.41435 4.46971 4.51566 4.57764 4.63596 4.67761 4.68958 4.76036 4.97893 4.99365 5.07603 5.17920 5.28281 5.39065 5.42249 5.43890 5.89907 6.17964 6.46973 6.52250 6.96703 7.04279 7.23670 8.73392 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.013956 B = 0.002734 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.780457 B =10238.128499 C =11783.003646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.104 4.104 3 C -0.240 4.240 4 C 0.015 3.985 5 O -0.162 6.162 6 C -0.109 4.109 7 C 0.607 3.393 8 O -0.545 6.545 9 N -0.645 5.645 10 C 0.106 3.894 11 C -0.124 4.124 12 C 0.124 3.876 13 H 0.128 0.872 14 C 0.119 3.881 15 N -0.700 5.700 16 C 0.536 3.464 17 O -0.571 6.571 18 C -0.126 4.126 19 S -0.146 6.146 20 C -0.549 4.549 21 H 0.079 0.921 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 1.001 2.999 25 H -0.264 1.264 26 H -0.275 1.275 27 H -0.261 1.261 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.056 0.944 31 H 0.177 0.823 32 H 0.259 0.741 33 H 0.113 0.887 34 H 0.091 0.909 35 H 0.130 0.870 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.044 0.956 39 H 0.410 0.590 40 H 0.095 0.905 41 H 0.108 0.892 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.681 13.456 11.875 34.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.107 4.107 3 C -0.258 4.258 4 C -0.055 4.055 5 O -0.058 6.058 6 C -0.160 4.160 7 C 0.398 3.602 8 O -0.424 6.424 9 N -0.380 5.380 10 C -0.015 4.015 11 C -0.162 4.162 12 C 0.022 3.978 13 H 0.146 0.854 14 C -0.005 4.005 15 N -0.353 5.353 16 C 0.322 3.678 17 O -0.450 6.450 18 C -0.277 4.277 19 S 0.081 5.919 20 C -0.697 4.697 21 H 0.097 0.903 22 C -0.191 4.191 23 N -0.547 5.547 24 Si 0.822 3.178 25 H -0.188 1.188 26 H -0.200 1.200 27 H -0.185 1.185 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.075 0.925 31 H 0.195 0.805 32 H 0.275 0.725 33 H 0.131 0.869 34 H 0.110 0.890 35 H 0.148 0.852 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.062 0.938 39 H 0.246 0.754 40 H 0.113 0.887 41 H 0.126 0.874 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 29.319 12.697 9.806 33.421 hybrid contribution -1.705 0.820 1.818 2.624 sum 27.614 13.516 11.624 32.869 Atomic orbital electron populations 1.20367 0.88942 1.03040 1.02785 1.20968 0.97744 0.92449 0.99534 1.22073 0.92664 1.00486 1.10616 1.25328 1.01055 0.79896 0.99172 1.84064 1.27037 1.23815 1.70839 1.21646 0.82485 0.94162 1.17748 1.16513 0.84805 0.82232 0.76699 1.90896 1.16747 1.82530 1.52269 1.50329 1.09374 1.06469 1.71821 1.23482 0.77545 0.97832 1.02593 1.23549 0.92695 0.97986 1.01978 1.23438 0.95813 0.78943 0.99599 0.85442 1.21624 0.80911 1.01917 0.96051 1.45602 1.05471 1.69467 1.14722 1.19940 0.86170 0.75764 0.85931 1.90658 1.86790 1.49419 1.18125 1.23315 0.95174 1.05641 1.03577 1.85454 0.99160 1.89853 1.17435 1.23160 0.92934 1.54357 0.99258 0.90277 1.26159 1.02727 0.93636 0.96606 1.70178 1.27035 1.44205 1.13303 0.84979 0.75637 0.79337 0.77868 1.18842 1.19979 1.18501 0.90627 0.89889 0.92533 0.80537 0.72518 0.86900 0.89050 0.85226 0.88743 0.89115 0.93800 0.75411 0.88713 0.87415 0.91881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.37 9.81 71.24 0.70 -1.67 16 2 C -0.10 -2.41 6.20 -19.74 -0.12 -2.53 16 3 C -0.24 -3.62 10.83 22.07 0.24 -3.38 16 4 C 0.01 0.16 12.08 67.10 0.81 0.97 16 5 O -0.16 -2.71 9.04 -4.96 -0.04 -2.75 16 6 C -0.11 -2.59 7.07 24.07 0.17 -2.42 16 7 C 0.61 16.36 7.88 86.44 0.68 17.04 16 8 O -0.54 -18.72 13.35 -4.34 -0.06 -18.78 16 9 N -0.64 -12.14 3.49 -818.75 -2.86 -15.00 16 10 C 0.11 0.95 8.03 86.48 0.69 1.64 16 11 C -0.12 -0.90 7.86 31.25 0.25 -0.65 16 12 C 0.12 1.86 4.27 45.09 0.19 2.06 16 13 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 14 C 0.12 2.96 5.33 86.38 0.46 3.42 16 15 N -0.70 -22.10 4.28 -463.06 -1.98 -24.08 16 16 C 0.54 23.10 7.85 87.66 0.69 23.78 16 17 O -0.57 -29.31 15.86 -3.05 -0.05 -29.36 16 18 C -0.13 -5.80 6.16 71.24 0.44 -5.36 16 19 S -0.15 -8.77 20.57 -56.49 -1.16 -9.93 16 20 C -0.55 -33.43 9.50 67.95 0.65 -32.78 16 21 H 0.08 4.52 7.80 -2.91 -0.02 4.50 16 22 C 0.01 0.80 5.49 84.86 0.47 1.27 16 23 N -0.91 -58.11 13.22 21.65 0.29 -57.82 16 24 Si 1.00 45.59 29.55 68.60 2.03 47.62 16 25 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 26 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 27 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 28 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.08 1.71 8.14 -2.39 -0.02 1.70 16 30 H 0.06 1.80 6.45 -2.39 -0.02 1.79 16 31 H 0.18 1.75 8.06 -2.91 -0.02 1.73 16 32 H 0.26 -0.13 8.06 -2.91 -0.02 -0.15 16 33 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.09 0.78 7.33 -2.39 -0.02 0.76 16 35 H 0.13 0.11 8.14 -2.39 -0.02 0.09 16 36 H 0.09 0.84 8.10 -2.39 -0.02 0.82 16 37 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.04 1.36 8.13 -2.39 -0.02 1.34 16 39 H 0.41 11.41 7.95 -92.70 -0.74 10.67 16 40 H 0.09 4.27 8.14 -2.40 -0.02 4.25 16 41 H 0.11 4.45 8.14 -2.39 -0.02 4.43 16 42 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 Total: -1.00 -91.28 374.36 2.79 -88.49 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 0.32 Total: 20.22 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: 6.31 Total: 1.38 kcal Atomic # 7 Polarization: -92.35 SS G_CDS: -4.55 Total: -96.90 kcal Atomic # 8 Polarization: -50.74 SS G_CDS: -0.15 Total: -50.89 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Atomic # 16 Polarization: -8.77 SS G_CDS: -1.16 Total: -9.93 kcal Total: -91.28 2.79 -88.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721993665.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.908 kcal (2) G-P(sol) polarization free energy of solvation -91.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds