Wall clock time and date at job start Tue Mar 31 2020 20:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46508 * 110.63911 * 2 1 4 4 C 1.34777 * 119.99949 * 303.14885 * 3 2 1 5 5 O 1.21274 * 120.00057 * 359.97438 * 4 3 2 6 6 C 1.50698 * 119.99698 * 180.02562 * 4 3 2 7 7 S 1.81000 * 109.46878 * 179.97438 * 6 4 3 8 8 C 1.76201 * 100.00109 * 179.97438 * 7 6 4 9 9 H 1.08009 * 120.00004 * 0.02562 * 8 7 6 10 10 C 1.38801 * 120.00539 * 180.02562 * 8 7 6 11 11 N 1.31636 * 119.99660 * 0.02562 * 10 8 7 12 12 Si 1.86793 * 120.00413 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47266 * 90.00088 * 12 10 8 14 14 H 1.48497 * 109.47579 * 209.99880 * 12 10 8 15 15 H 1.48499 * 109.47319 * 330.00245 * 12 10 8 16 16 C 1.55155 * 110.72044 * 123.13969 * 2 1 3 17 17 C 1.54915 * 101.57874 * 153.86626 * 16 2 1 18 18 N 1.47425 * 104.83341 * 322.99431 * 17 16 2 19 19 C 1.34773 * 125.64864 * 204.09651 * 18 17 16 20 20 O 1.21613 * 120.00162 * 5.13586 * 19 18 17 21 21 C 1.47384 * 119.99974 * 185.14298 * 19 18 17 22 22 C 1.47020 * 127.19310 * 174.37690 * 21 19 18 23 23 C 1.34175 * 105.95691 * 179.97438 * 22 21 19 24 24 O 1.34218 * 109.12119 * 359.97438 * 23 22 21 25 25 C 1.33650 * 110.91014 * 0.02562 * 24 23 22 26 26 C 1.47027 * 108.70117 * 24.35400 * 18 17 16 27 27 H 1.09008 * 109.47017 * 296.85407 * 1 2 3 28 28 H 1.08999 * 109.47385 * 56.85785 * 1 2 3 29 29 H 1.09002 * 109.47004 * 176.86086 * 1 2 3 30 30 H 0.96998 * 119.99900 * 123.13919 * 3 2 1 31 31 H 1.08999 * 109.47416 * 299.99485 * 6 4 3 32 32 H 1.09004 * 109.47215 * 59.99665 * 6 4 3 33 33 H 0.96999 * 119.99958 * 179.97438 * 11 10 8 34 34 H 1.09000 * 111.00592 * 35.79557 * 16 2 1 35 35 H 1.08993 * 111.00506 * 271.93775 * 16 2 1 36 36 H 1.08991 * 110.36660 * 204.15227 * 17 16 2 37 37 H 1.08998 * 110.45981 * 81.87704 * 17 16 2 38 38 H 1.07998 * 127.02073 * 359.96997 * 22 21 19 39 39 H 1.07993 * 125.43906 * 179.97438 * 23 22 21 40 40 H 1.08001 * 125.80199 * 179.97438 * 25 24 23 41 41 H 1.08999 * 109.88139 * 118.13267 * 26 18 17 42 42 H 1.09003 * 109.88141 * 239.29588 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3710 0.0000 4 6 1.6867 2.2266 -0.9772 5 8 0.9359 1.8615 -1.8568 6 6 2.2184 3.6367 -0.9775 7 16 1.5583 4.5301 -2.4066 8 6 2.3191 6.1007 -2.1638 9 1 2.9702 6.2602 -1.3169 10 6 2.0817 7.1330 -3.0607 11 7 1.2878 6.9388 -4.0926 12 14 2.8877 8.7983 -2.8029 13 1 4.1987 8.8269 -3.4999 14 1 2.0112 9.8631 -3.3533 15 1 3.0943 9.0287 -1.3505 16 6 2.0790 -0.7933 1.2151 17 6 3.4633 -1.2485 0.6896 18 7 3.2446 -1.5518 -0.7365 19 6 3.9923 -2.3860 -1.4858 20 8 4.8825 -3.0342 -0.9696 21 6 3.7314 -2.5124 -2.9308 22 6 4.5139 -3.2788 -3.9115 23 6 3.9021 -3.1002 -5.0922 24 8 2.8339 -2.3063 -4.9183 25 6 2.7127 -1.9436 -3.6377 26 6 2.0793 -0.7889 -1.2073 27 1 -0.3633 0.4643 0.9169 28 1 -0.3634 0.5618 -0.8605 29 1 -0.3633 -1.0261 -0.0563 30 1 2.6471 1.6630 0.7034 31 1 1.9124 4.1406 -0.0607 32 1 3.3067 3.6147 -1.0342 33 1 1.1216 7.6603 -4.7192 34 1 1.4453 -1.6511 1.4403 35 1 2.1850 -0.1483 2.0872 36 1 3.7961 -2.1404 1.2204 37 1 4.1946 -0.4477 0.7992 38 1 5.4003 -3.8655 -3.7206 39 1 4.2186 -3.5270 -6.0324 40 1 1.9397 -1.3081 -3.2315 41 1 2.3814 -0.1001 -1.9963 42 1 1.3156 -1.4713 -1.5804 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001739669356.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:06 Heat of formation + Delta-G solvation = -40.650461 kcal Electronic energy + Delta-G solvation = -26886.932054 eV Core-core repulsion = 22960.605220 eV Total energy + Delta-G solvation = -3926.326834 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.71448 -40.76992 -39.17595 -37.48200 -34.31897 -33.09705 -32.47115 -31.82375 -30.92036 -29.27760 -28.64131 -26.91415 -25.52671 -24.59631 -22.25711 -21.81268 -21.26118 -20.01429 -19.79357 -17.96802 -17.74220 -17.06934 -16.56866 -16.37301 -16.25102 -15.60641 -15.42864 -15.06551 -14.84133 -14.42050 -14.08853 -13.98693 -13.76901 -13.39901 -13.18048 -13.10212 -13.06997 -12.69857 -12.59430 -12.44568 -12.38165 -11.95997 -11.73894 -11.58686 -11.11578 -11.09344 -11.01870 -10.79732 -10.24702 -10.00016 -9.86369 -9.40930 -9.14508 -9.08759 -9.00429 -8.88805 -8.30588 -6.55285 -6.26306 -3.97112 1.18471 1.88796 2.56077 2.86366 2.89695 2.92112 3.17348 3.19575 3.24560 3.28020 3.58916 3.93868 4.12777 4.16310 4.43657 4.46836 4.54029 4.77560 4.88352 4.94448 5.00402 5.09366 5.21629 5.29197 5.33636 5.38271 5.45379 5.46313 5.52184 5.59692 5.66525 5.70944 5.75996 5.80807 5.96987 6.06690 6.11873 6.20669 6.52290 6.78448 7.21054 7.54474 7.56273 7.96541 8.30702 8.45093 9.19509 10.81064 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.012518 B = 0.002954 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.278520 B = 9476.637806 C =10622.256245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.170 3.830 3 N -0.728 5.728 4 C 0.537 3.463 5 O -0.513 6.513 6 C -0.156 4.156 7 S -0.057 6.057 8 C -0.537 4.537 9 H 0.072 0.928 10 C 0.074 3.926 11 N -0.867 5.867 12 Si 0.918 3.082 13 H -0.277 1.277 14 H -0.282 1.282 15 H -0.272 1.272 16 C -0.134 4.134 17 C 0.107 3.893 18 N -0.615 5.615 19 C 0.606 3.394 20 O -0.540 6.540 21 C -0.241 4.241 22 C -0.167 4.167 23 C -0.041 4.041 24 O -0.171 6.171 25 C 0.021 3.979 26 C 0.083 3.917 27 H 0.064 0.936 28 H 0.091 0.909 29 H 0.064 0.936 30 H 0.400 0.600 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.269 0.731 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.159 0.841 39 H 0.209 0.791 40 H 0.220 0.780 41 H 0.088 0.912 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.691 -19.350 7.724 20.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.083 3.917 3 N -0.383 5.383 4 C 0.324 3.676 5 O -0.387 6.387 6 C -0.306 4.306 7 S 0.170 5.830 8 C -0.685 4.685 9 H 0.091 0.909 10 C -0.135 4.135 11 N -0.502 5.502 12 Si 0.744 3.256 13 H -0.203 1.203 14 H -0.207 1.207 15 H -0.197 1.197 16 C -0.173 4.173 17 C -0.015 4.015 18 N -0.349 5.349 19 C 0.397 3.603 20 O -0.418 6.418 21 C -0.245 4.245 22 C -0.186 4.186 23 C -0.107 4.107 24 O -0.065 6.065 25 C -0.049 4.049 26 C -0.041 4.041 27 H 0.083 0.917 28 H 0.110 0.890 29 H 0.083 0.917 30 H 0.235 0.765 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.079 0.921 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.176 0.824 39 H 0.225 0.775 40 H 0.236 0.764 41 H 0.106 0.894 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.693 -20.201 6.080 21.108 hybrid contribution 1.893 1.703 1.619 3.017 sum 2.585 -18.499 7.699 20.203 Atomic orbital electron populations 1.22163 0.92157 1.02855 1.04733 1.21114 0.94919 0.81937 0.93768 1.46095 1.51530 1.10865 1.29812 1.20312 0.80076 0.86615 0.80610 1.90648 1.34496 1.77687 1.35892 1.23555 1.04438 0.94977 1.07653 1.85342 1.62838 1.08125 1.26738 1.22863 1.33972 0.97153 1.14518 0.90948 1.24983 0.95056 0.99011 0.94447 1.70011 1.34350 1.33230 1.12656 0.86175 0.79082 0.81735 0.78565 1.20251 1.20726 1.19687 1.23161 0.96160 1.00697 0.97240 1.22250 0.97097 1.01354 0.80836 1.48259 1.30608 1.44615 1.11407 1.16871 0.80684 0.78187 0.84557 1.90774 1.32324 1.45315 1.73432 1.21397 1.00834 1.07822 0.94476 1.22728 1.02133 1.02872 0.90901 1.23984 0.88586 0.97697 1.00427 1.83860 1.42025 1.52489 1.28156 1.25403 0.99995 0.98655 0.80866 1.22866 0.87849 0.94938 0.98434 0.91734 0.88994 0.91666 0.76496 0.89155 0.89271 0.92149 0.88762 0.88720 0.89768 0.91047 0.82368 0.77472 0.76391 0.89380 0.90041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 8.43 37.16 0.31 -1.23 16 2 C 0.17 1.62 0.81 -129.98 -0.10 1.51 16 3 N -0.73 -8.07 5.14 -45.91 -0.24 -8.31 16 4 C 0.54 8.62 7.06 -10.99 -0.08 8.54 16 5 O -0.51 -9.69 12.84 5.56 0.07 -9.62 16 6 C -0.16 -2.89 6.16 36.00 0.22 -2.67 16 7 S -0.06 -1.47 20.57 -107.50 -2.21 -3.68 16 8 C -0.54 -14.87 9.50 30.94 0.29 -14.57 16 9 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 10 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 11 N -0.87 -25.58 13.22 55.49 0.73 -24.84 16 12 Si 0.92 21.03 29.55 -169.99 -5.02 16.00 16 13 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 15 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 16 C -0.13 -0.91 6.08 -24.58 -0.15 -1.06 16 17 C 0.11 0.97 6.91 -2.53 -0.02 0.95 16 18 N -0.61 -7.03 3.33 -171.80 -0.57 -7.60 16 19 C 0.61 8.49 7.84 -12.54 -0.10 8.39 16 20 O -0.54 -9.09 17.22 5.27 0.09 -9.00 16 21 C -0.24 -3.09 6.28 -103.27 -0.65 -3.74 16 22 C -0.17 -1.88 11.02 -37.46 -0.41 -2.29 16 23 C -0.04 -0.39 12.03 29.30 0.35 -0.03 16 24 O -0.17 -1.96 10.52 7.65 0.08 -1.88 16 25 C 0.02 0.24 10.64 30.08 0.32 0.56 16 26 C 0.08 0.88 3.96 -3.06 -0.01 0.87 16 27 H 0.06 0.58 8.14 -51.92 -0.42 0.15 16 28 H 0.09 1.18 5.97 -51.93 -0.31 0.87 16 29 H 0.06 0.50 8.07 -51.93 -0.42 0.08 16 30 H 0.40 3.45 8.49 -40.82 -0.35 3.11 16 31 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 32 H 0.09 1.57 8.14 -51.91 -0.42 1.14 16 33 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.09 0.55 8.05 -51.93 -0.42 0.14 16 35 H 0.09 0.48 8.07 -51.93 -0.42 0.06 16 36 H 0.08 0.77 7.99 -51.93 -0.41 0.36 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.16 1.60 8.06 -52.49 -0.42 1.17 16 39 H 0.21 1.08 8.06 -52.49 -0.42 0.66 16 40 H 0.22 2.24 4.50 -52.49 -0.24 2.00 16 41 H 0.09 1.14 5.71 -51.93 -0.30 0.84 16 42 H 0.08 0.75 6.64 -51.93 -0.34 0.40 16 LS Contribution 364.18 15.07 5.49 5.49 Total: -1.00 -35.84 364.18 -6.98 -42.81 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -5.28 Total: 3.42 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -0.12 Total: -2.79 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: -0.07 Total: -40.75 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: 0.24 Total: -20.51 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: -1.47 SS G_CDS: -2.21 Total: -3.68 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.84 -6.98 -42.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739669356.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.164 kcal (2) G-P(sol) polarization free energy of solvation -35.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds