Wall clock time and date at job start Tue Mar 31 2020 20:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46508 * 110.63911 * 2 1 4 4 C 1.34777 * 119.99949 * 303.14885 * 3 2 1 5 5 O 1.21274 * 120.00057 * 359.97438 * 4 3 2 6 6 C 1.50698 * 119.99698 * 180.02562 * 4 3 2 7 7 S 1.81000 * 109.46878 * 179.97438 * 6 4 3 8 8 C 1.76201 * 100.00109 * 179.97438 * 7 6 4 9 9 H 1.08009 * 120.00004 * 0.02562 * 8 7 6 10 10 C 1.38801 * 120.00539 * 180.02562 * 8 7 6 11 11 N 1.31636 * 119.99660 * 0.02562 * 10 8 7 12 12 Si 1.86793 * 120.00413 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47266 * 90.00088 * 12 10 8 14 14 H 1.48497 * 109.47579 * 209.99880 * 12 10 8 15 15 H 1.48499 * 109.47319 * 330.00245 * 12 10 8 16 16 C 1.55155 * 110.72044 * 123.13969 * 2 1 3 17 17 C 1.54915 * 101.57874 * 153.86626 * 16 2 1 18 18 N 1.47425 * 104.83341 * 322.99431 * 17 16 2 19 19 C 1.34773 * 125.64864 * 204.09651 * 18 17 16 20 20 O 1.21613 * 120.00162 * 5.13586 * 19 18 17 21 21 C 1.47384 * 119.99974 * 185.14298 * 19 18 17 22 22 C 1.47020 * 127.19310 * 174.37690 * 21 19 18 23 23 C 1.34175 * 105.95691 * 179.97438 * 22 21 19 24 24 O 1.34218 * 109.12119 * 359.97438 * 23 22 21 25 25 C 1.33650 * 110.91014 * 0.02562 * 24 23 22 26 26 C 1.47027 * 108.70117 * 24.35400 * 18 17 16 27 27 H 1.09008 * 109.47017 * 296.85407 * 1 2 3 28 28 H 1.08999 * 109.47385 * 56.85785 * 1 2 3 29 29 H 1.09002 * 109.47004 * 176.86086 * 1 2 3 30 30 H 0.96998 * 119.99900 * 123.13919 * 3 2 1 31 31 H 1.08999 * 109.47416 * 299.99485 * 6 4 3 32 32 H 1.09004 * 109.47215 * 59.99665 * 6 4 3 33 33 H 0.96999 * 119.99958 * 179.97438 * 11 10 8 34 34 H 1.09000 * 111.00592 * 35.79557 * 16 2 1 35 35 H 1.08993 * 111.00506 * 271.93775 * 16 2 1 36 36 H 1.08991 * 110.36660 * 204.15227 * 17 16 2 37 37 H 1.08998 * 110.45981 * 81.87704 * 17 16 2 38 38 H 1.07998 * 127.02073 * 359.96997 * 22 21 19 39 39 H 1.07993 * 125.43906 * 179.97438 * 23 22 21 40 40 H 1.08001 * 125.80199 * 179.97438 * 25 24 23 41 41 H 1.08999 * 109.88139 * 118.13267 * 26 18 17 42 42 H 1.09003 * 109.88141 * 239.29588 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3710 0.0000 4 6 1.6867 2.2266 -0.9772 5 8 0.9359 1.8615 -1.8568 6 6 2.2184 3.6367 -0.9775 7 16 1.5583 4.5301 -2.4066 8 6 2.3191 6.1007 -2.1638 9 1 2.9702 6.2602 -1.3169 10 6 2.0817 7.1330 -3.0607 11 7 1.2878 6.9388 -4.0926 12 14 2.8877 8.7983 -2.8029 13 1 4.1987 8.8269 -3.4999 14 1 2.0112 9.8631 -3.3533 15 1 3.0943 9.0287 -1.3505 16 6 2.0790 -0.7933 1.2151 17 6 3.4633 -1.2485 0.6896 18 7 3.2446 -1.5518 -0.7365 19 6 3.9923 -2.3860 -1.4858 20 8 4.8825 -3.0342 -0.9696 21 6 3.7314 -2.5124 -2.9308 22 6 4.5139 -3.2788 -3.9115 23 6 3.9021 -3.1002 -5.0922 24 8 2.8339 -2.3063 -4.9183 25 6 2.7127 -1.9436 -3.6377 26 6 2.0793 -0.7889 -1.2073 27 1 -0.3633 0.4643 0.9169 28 1 -0.3634 0.5618 -0.8605 29 1 -0.3633 -1.0261 -0.0563 30 1 2.6471 1.6630 0.7034 31 1 1.9124 4.1406 -0.0607 32 1 3.3067 3.6147 -1.0342 33 1 1.1216 7.6603 -4.7192 34 1 1.4453 -1.6511 1.4403 35 1 2.1850 -0.1483 2.0872 36 1 3.7961 -2.1404 1.2204 37 1 4.1946 -0.4477 0.7992 38 1 5.4003 -3.8655 -3.7206 39 1 4.2186 -3.5270 -6.0324 40 1 1.9397 -1.3081 -3.2315 41 1 2.3814 -0.1001 -1.9963 42 1 1.3156 -1.4713 -1.5804 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001739669356.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:05 Heat of formation + Delta-G solvation = -66.537307 kcal Electronic energy + Delta-G solvation = -26888.054592 eV Core-core repulsion = 22960.605220 eV Total energy + Delta-G solvation = -3927.449372 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.58754 -41.73315 -40.32035 -38.56317 -35.37673 -34.57403 -34.01015 -32.86901 -31.75322 -30.18071 -29.87736 -27.79240 -27.63968 -25.44827 -23.16501 -22.64597 -22.25945 -20.92679 -20.81642 -19.81649 -18.67243 -18.04502 -17.73544 -17.40956 -17.15813 -16.87036 -16.60870 -16.49843 -16.31588 -15.83070 -15.16180 -14.92234 -14.78755 -14.63599 -14.44838 -14.17773 -13.97766 -13.89314 -13.58837 -13.30172 -13.25597 -13.15023 -13.06328 -12.88628 -12.62948 -12.40049 -12.37677 -11.88228 -11.71265 -11.33681 -11.13750 -10.93146 -10.67993 -10.25554 -10.17530 -9.88318 -9.79437 -8.62940 -8.34378 -6.10533 0.23594 1.05811 1.27994 1.41807 1.47311 1.57095 1.62018 1.70492 2.06426 2.15477 2.24972 2.30318 3.00066 3.16264 3.32454 3.35087 3.57399 3.68183 3.78098 3.95462 3.97474 4.13852 4.23844 4.33411 4.40442 4.47351 4.53302 4.59042 4.65684 4.71222 4.75970 4.82634 4.87871 5.00705 5.02546 5.16909 5.29410 5.39245 5.42702 5.56945 5.92982 6.20181 6.23961 6.53295 6.94508 7.07820 7.26849 8.74449 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.012518 B = 0.002954 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.278520 B = 9476.637806 C =10622.256245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.168 3.832 3 N -0.705 5.705 4 C 0.540 3.460 5 O -0.545 6.545 6 C -0.134 4.134 7 S -0.140 6.140 8 C -0.549 4.549 9 H 0.080 0.920 10 C 0.016 3.984 11 N -0.909 5.909 12 Si 0.994 3.006 13 H -0.270 1.270 14 H -0.278 1.278 15 H -0.259 1.259 16 C -0.114 4.114 17 C 0.097 3.903 18 N -0.610 5.610 19 C 0.599 3.401 20 O -0.578 6.578 21 C -0.264 4.264 22 C -0.193 4.193 23 C -0.023 4.023 24 O -0.181 6.181 25 C 0.020 3.980 26 C 0.083 3.917 27 H 0.075 0.925 28 H 0.057 0.943 29 H 0.087 0.913 30 H 0.416 0.584 31 H 0.108 0.892 32 H 0.101 0.899 33 H 0.271 0.729 34 H 0.113 0.887 35 H 0.124 0.876 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.164 0.836 39 H 0.251 0.749 40 H 0.227 0.773 41 H 0.064 0.936 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.155 -19.568 9.550 21.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.081 3.919 3 N -0.360 5.360 4 C 0.326 3.674 5 O -0.422 6.422 6 C -0.286 4.286 7 S 0.087 5.913 8 C -0.696 4.696 9 H 0.098 0.902 10 C -0.189 4.189 11 N -0.546 5.546 12 Si 0.816 3.184 13 H -0.195 1.195 14 H -0.203 1.203 15 H -0.183 1.183 16 C -0.152 4.152 17 C -0.024 4.024 18 N -0.343 5.343 19 C 0.391 3.609 20 O -0.460 6.460 21 C -0.269 4.269 22 C -0.212 4.212 23 C -0.088 4.088 24 O -0.076 6.076 25 C -0.050 4.050 26 C -0.041 4.041 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.106 0.894 30 H 0.254 0.746 31 H 0.127 0.873 32 H 0.120 0.880 33 H 0.080 0.920 34 H 0.132 0.868 35 H 0.142 0.858 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.182 0.818 39 H 0.267 0.733 40 H 0.242 0.758 41 H 0.082 0.918 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.156 -20.424 7.962 21.951 hybrid contribution 1.756 1.657 1.080 2.645 sum 2.912 -18.766 9.042 21.034 Atomic orbital electron populations 1.22109 0.91756 1.03894 1.03708 1.21287 0.95111 0.80684 0.94798 1.45842 1.50711 1.10904 1.28543 1.19881 0.79950 0.86201 0.81360 1.90655 1.36079 1.78015 1.37481 1.23408 1.04745 0.95950 1.04462 1.85445 1.64379 1.09522 1.31959 1.23217 1.33910 0.97746 1.14764 0.90189 1.26053 0.95538 1.03335 0.93992 1.70167 1.36040 1.34595 1.13798 0.85020 0.77974 0.76298 0.79129 1.19535 1.20297 1.18256 1.23174 0.94387 1.01158 0.96496 1.22496 0.98790 1.01588 0.79517 1.48324 1.30137 1.43505 1.12330 1.17107 0.80490 0.78224 0.85125 1.90738 1.34024 1.47079 1.74174 1.21591 1.01870 1.08931 0.94491 1.22964 1.02995 1.03888 0.91401 1.24768 0.86905 0.95753 1.01409 1.83875 1.42826 1.52867 1.27989 1.25501 0.99942 0.98587 0.80956 1.22884 0.87857 0.94880 0.98437 0.90588 0.92394 0.89375 0.74636 0.87347 0.88033 0.92027 0.86842 0.85827 0.89760 0.90747 0.81823 0.73314 0.75757 0.91790 0.88616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 8.43 71.98 0.61 -2.05 16 2 C 0.17 2.80 0.81 4.79 0.00 2.80 16 3 N -0.71 -14.10 5.14 -417.55 -2.15 -16.25 16 4 C 0.54 16.94 7.06 87.66 0.62 17.56 16 5 O -0.55 -20.91 12.84 -3.01 -0.04 -20.95 16 6 C -0.13 -4.90 6.16 71.24 0.44 -4.46 16 7 S -0.14 -7.39 20.57 -56.49 -1.16 -8.55 16 8 C -0.55 -30.55 9.50 67.95 0.65 -29.90 16 9 H 0.08 4.16 7.80 -2.91 -0.02 4.14 16 10 C 0.02 0.88 5.49 84.86 0.47 1.35 16 11 N -0.91 -54.75 13.22 21.65 0.29 -54.47 16 12 Si 0.99 42.93 29.55 68.60 2.03 44.95 16 13 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 14 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 15 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 16 C -0.11 -1.12 6.08 31.99 0.19 -0.93 16 17 C 0.10 1.56 6.91 86.86 0.60 2.16 16 18 N -0.61 -13.45 3.33 -815.69 -2.71 -16.16 16 19 C 0.60 16.95 7.84 86.65 0.68 17.63 16 20 O -0.58 -19.86 17.22 -4.07 -0.07 -19.93 16 21 C -0.26 -6.89 6.28 -18.99 -0.12 -7.01 16 22 C -0.19 -4.32 11.02 23.65 0.26 -4.06 16 23 C -0.02 -0.41 12.03 66.89 0.80 0.40 16 24 O -0.18 -4.07 10.52 4.47 0.05 -4.02 16 25 C 0.02 0.48 10.64 67.39 0.72 1.19 16 26 C 0.08 1.68 3.96 86.73 0.34 2.03 16 27 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 28 H 0.06 1.45 5.97 -2.39 -0.01 1.43 16 29 H 0.09 1.09 8.07 -2.39 -0.02 1.07 16 30 H 0.42 5.82 8.49 -92.71 -0.79 5.04 16 31 H 0.11 3.55 8.14 -2.40 -0.02 3.53 16 32 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 33 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 34 H 0.11 0.81 8.05 -2.39 -0.02 0.79 16 35 H 0.12 0.61 8.07 -2.39 -0.02 0.59 16 36 H 0.08 1.40 7.99 -2.39 -0.02 1.38 16 37 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16 39 H 0.25 1.91 8.06 -2.91 -0.02 1.89 16 40 H 0.23 4.72 4.50 -2.91 -0.01 4.71 16 41 H 0.06 1.66 5.71 -2.39 -0.01 1.65 16 42 H 0.10 1.67 6.64 -2.39 -0.02 1.66 16 Total: -1.00 -81.55 364.18 2.77 -78.77 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 0.28 Total: 19.90 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: 6.26 Total: -3.29 kcal Atomic # 7 Polarization: -82.30 SS G_CDS: -4.57 Total: -86.88 kcal Atomic # 8 Polarization: -44.84 SS G_CDS: -0.06 Total: -44.90 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 16 Polarization: -7.39 SS G_CDS: -1.16 Total: -8.55 kcal Total: -81.55 2.77 -78.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739669356.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.238 kcal (2) G-P(sol) polarization free energy of solvation -81.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds