Wall clock time and date at job start Tue Mar 31 2020 20:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34181 * 127.02507 * 2 1 4 4 O 1.34214 * 109.12376 * 179.97438 * 3 2 1 5 5 C 1.33649 * 110.90760 * 359.76266 * 4 3 2 6 6 C 1.36420 * 108.40027 * 0.38528 * 5 4 3 7 7 C 1.47380 * 127.19214 * 179.90021 * 6 5 4 8 8 O 1.21616 * 119.99493 * 179.68903 * 7 6 5 9 9 N 1.34774 * 120.00033 * 359.68059 * 7 6 5 10 10 C 1.46496 * 119.99956 * 180.02562 * 9 7 6 11 11 C 1.50695 * 109.47317 * 179.97438 * 10 9 7 12 12 C 1.31007 * 119.99666 * 127.15371 * 11 10 9 13 13 C 1.50694 * 120.00400 * 7.56139 * 12 11 10 14 14 N 1.46501 * 109.47079 * 127.00487 * 13 12 11 15 15 C 1.34781 * 119.99784 * 180.02562 * 14 13 12 16 16 O 1.21285 * 119.99868 * 0.02562 * 15 14 13 17 17 C 1.50702 * 119.99823 * 179.97438 * 15 14 13 18 18 S 1.81000 * 109.47092 * 179.97438 * 17 15 14 19 19 C 1.76194 * 99.99788 * 180.02562 * 18 17 15 20 20 H 1.07998 * 120.00321 * 359.97438 * 19 18 17 21 21 C 1.38804 * 119.99678 * 180.02562 * 19 18 17 22 22 N 1.31636 * 119.99865 * 179.97438 * 21 19 18 23 23 Si 1.86795 * 120.00250 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47033 * 90.00432 * 23 21 19 25 25 H 1.48495 * 109.47660 * 210.00463 * 23 21 19 26 26 H 1.48505 * 109.47043 * 330.00579 * 23 21 19 27 27 H 1.09004 * 109.47209 * 270.03238 * 1 2 3 28 28 H 1.09001 * 109.46743 * 30.02561 * 1 2 3 29 29 H 1.08999 * 109.47344 * 150.02756 * 1 2 3 30 30 H 1.07995 * 125.43332 * 359.97267 * 3 2 1 31 31 H 1.07997 * 125.80159 * 180.27097 * 5 4 3 32 32 H 0.96999 * 119.99873 * 359.97438 * 9 7 6 33 33 H 1.09007 * 109.47196 * 59.99620 * 10 9 7 34 34 H 1.09002 * 109.47238 * 300.00185 * 10 9 7 35 35 H 1.07997 * 120.00206 * 307.15471 * 11 10 9 36 36 H 1.08000 * 119.99391 * 187.56469 * 12 11 10 37 37 H 1.09002 * 109.47093 * 247.00562 * 13 12 11 38 38 H 1.09003 * 109.46867 * 7.00757 * 13 12 11 39 39 H 0.97002 * 120.00184 * 0.02562 * 14 13 12 40 40 H 1.09002 * 109.46937 * 300.00387 * 17 15 14 41 41 H 1.09003 * 109.46824 * 60.00498 * 17 15 14 42 42 H 0.96995 * 119.99994 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0713 0.0000 4 8 3.5922 0.6587 0.0006 5 6 3.6623 -0.6759 0.0061 6 6 2.3922 -1.1739 0.0007 7 6 1.9913 -2.5921 0.0018 8 8 0.8124 -2.8906 0.0021 9 7 2.9312 -3.5580 0.0023 10 6 2.5326 -4.9678 0.0028 11 6 3.7631 -5.8377 0.0027 12 6 3.9027 -6.7750 0.9072 13 6 2.7637 -7.0981 1.8396 14 7 2.4843 -8.5353 1.7896 15 6 1.4985 -9.0569 2.5463 16 8 0.8423 -8.3362 3.2682 17 6 1.2107 -10.5352 2.4945 18 16 -0.1572 -10.9233 3.6145 19 6 -0.2757 -12.6629 3.3614 20 1 0.3943 -13.1553 2.6722 21 6 -1.2310 -13.4004 4.0471 22 7 -1.3199 -14.7001 3.8577 23 14 -2.3904 -12.5488 5.2386 24 1 -3.6097 -12.1092 4.5139 25 1 -2.7706 -13.4931 6.3198 26 1 -1.7126 -11.3669 5.8294 27 1 -0.3634 0.0006 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3634 -0.8902 -0.5134 30 1 1.9895 2.1010 -0.0004 31 1 4.5701 -1.2609 0.0119 32 1 3.8714 -3.3198 0.0016 33 1 1.9394 -5.1780 -0.8872 34 1 1.9392 -5.1773 0.8928 35 1 4.5300 -5.6884 -0.7430 36 1 4.8341 -7.3162 0.9846 37 1 3.0356 -6.8159 2.8567 38 1 1.8758 -6.5445 1.5339 39 1 3.0089 -9.1116 1.2119 40 1 0.9391 -10.8171 1.4772 41 1 2.0984 -11.0891 2.8003 42 1 -1.9872 -15.2155 4.3372 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001747095008.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:46 Heat of formation + Delta-G solvation = -39.470486 kcal Electronic energy + Delta-G solvation = -24626.542856 eV Core-core repulsion = 20700.267189 eV Total energy + Delta-G solvation = -3926.275667 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.02842 -39.86121 -39.29985 -36.95558 -34.82512 -34.23800 -33.07515 -32.42843 -31.08798 -29.67837 -27.63201 -27.17179 -25.68644 -25.28124 -23.59583 -20.99867 -20.69333 -20.54743 -19.49729 -18.36687 -17.70157 -17.07408 -16.68066 -16.44237 -16.33888 -15.78922 -15.60434 -15.28090 -15.11291 -14.93406 -14.57899 -13.93505 -13.86406 -13.74535 -13.64745 -13.39909 -13.26560 -13.09010 -12.90265 -12.78966 -12.63426 -11.96293 -11.90885 -11.29424 -11.24532 -10.99531 -10.60742 -10.45096 -10.00378 -9.99120 -9.83191 -9.52616 -9.40644 -9.15358 -8.99819 -8.89234 -8.49175 -6.90993 -6.28163 -3.99887 0.87069 1.38768 1.59479 2.44184 2.77993 2.89683 2.96173 2.98501 3.34072 3.39400 3.52113 3.70993 4.02429 4.14757 4.23060 4.34368 4.45961 4.58029 4.74716 4.80483 4.83342 4.97163 5.10950 5.15124 5.26027 5.31940 5.39524 5.43560 5.48367 5.53568 5.59710 5.62338 5.76644 5.91614 6.01122 6.02540 6.08594 6.21062 6.47493 6.49395 7.06984 7.58013 7.84782 7.94874 8.42173 8.47067 9.18104 10.81010 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.020844 B = 0.001677 C = 0.001583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.996133 B =16696.069137 C =17684.213386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.130 4.130 3 C -0.047 4.047 4 O -0.172 6.172 5 C 0.020 3.980 6 C -0.233 4.233 7 C 0.585 3.415 8 O -0.526 6.526 9 N -0.724 5.724 10 C 0.135 3.865 11 C -0.164 4.164 12 C -0.141 4.141 13 C 0.133 3.867 14 N -0.733 5.733 15 C 0.530 3.470 16 O -0.518 6.518 17 C -0.124 4.124 18 S -0.141 6.141 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.208 0.792 31 H 0.210 0.790 32 H 0.398 0.602 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.401 0.599 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.033 29.987 -11.729 35.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C -0.113 4.113 4 O -0.067 6.067 5 C -0.050 4.050 6 C -0.237 4.237 7 C 0.372 3.628 8 O -0.402 6.402 9 N -0.376 5.376 10 C 0.012 3.988 11 C -0.183 4.183 12 C -0.160 4.160 13 C 0.010 3.990 14 N -0.388 5.388 15 C 0.316 3.684 16 O -0.392 6.392 17 C -0.274 4.274 18 S 0.085 5.915 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.102 0.898 30 H 0.225 0.775 31 H 0.227 0.773 32 H 0.232 0.768 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.235 0.765 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 14.188 30.988 -10.466 35.652 hybrid contribution 0.997 -1.141 -0.689 1.665 sum 15.185 29.847 -11.155 35.297 Atomic orbital electron populations 1.20268 0.88147 1.03332 1.02848 1.21466 0.97438 0.90283 1.04026 1.23756 0.79530 0.99808 1.08176 1.83784 1.29776 1.22249 1.70856 1.24395 0.98668 0.81298 1.00660 1.21420 0.93472 0.94186 1.14636 1.17269 0.85558 0.83700 0.76265 1.90821 1.17221 1.83157 1.49043 1.45759 1.09384 1.05975 1.76468 1.20593 0.95517 0.78682 1.03979 1.22851 0.98812 0.98206 0.98424 1.23034 0.98830 0.98905 0.95216 1.20508 0.96592 0.82497 0.99406 1.45895 1.37504 1.08307 1.47079 1.20320 0.79040 0.90063 0.78994 1.90716 1.48113 1.61519 1.38838 1.23276 1.04683 0.93869 1.05591 1.84817 1.41097 1.10566 1.55028 1.22319 1.23389 0.89875 1.31361 0.89379 1.24713 0.96326 0.94310 0.95942 1.69939 1.34628 1.05565 1.41556 0.86734 0.82351 0.81169 0.81605 1.19175 1.19942 1.15919 0.90969 0.91616 0.89835 0.77499 0.77317 0.76846 0.90245 0.89430 0.85871 0.85707 0.90584 0.90117 0.76528 0.88421 0.88405 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.72 10.00 36.01 0.36 -0.36 16 2 C -0.13 -1.10 6.37 -102.49 -0.65 -1.75 16 3 C -0.05 -0.29 11.96 29.30 0.35 0.07 16 4 O -0.17 -1.10 10.52 7.66 0.08 -1.02 16 5 C 0.02 0.11 11.61 30.08 0.35 0.46 16 6 C -0.23 -1.99 6.31 -103.27 -0.65 -2.64 16 7 C 0.58 6.10 7.81 -12.54 -0.10 6.00 16 8 O -0.53 -7.69 15.41 5.26 0.08 -7.60 16 9 N -0.72 -5.21 5.54 -62.58 -0.35 -5.55 16 10 C 0.13 1.10 5.76 -5.20 -0.03 1.07 16 11 C -0.16 -0.94 9.63 -36.03 -0.35 -1.29 16 12 C -0.14 -0.93 9.63 -36.03 -0.35 -1.28 16 13 C 0.13 1.41 5.76 -5.20 -0.03 1.38 16 14 N -0.73 -8.99 5.55 -61.47 -0.34 -9.34 16 15 C 0.53 9.38 7.85 -10.98 -0.09 9.30 16 16 O -0.52 -11.31 15.86 5.55 0.09 -11.22 16 17 C -0.12 -2.38 6.16 36.01 0.22 -2.16 16 18 S -0.14 -3.61 18.55 -107.50 -1.99 -5.61 16 19 C -0.52 -15.10 10.04 30.94 0.31 -14.79 16 20 H 0.09 2.65 8.03 -52.49 -0.42 2.22 16 21 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 22 N -0.88 -26.65 13.97 55.49 0.78 -25.87 16 23 Si 0.86 21.97 27.74 -169.99 -4.71 17.26 16 24 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 26 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.86 6.91 -51.93 -0.36 0.50 16 30 H 0.21 0.52 8.06 -52.49 -0.42 0.10 16 31 H 0.21 0.20 7.47 -52.49 -0.39 -0.19 16 32 H 0.40 1.45 7.43 -40.82 -0.30 1.15 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.09 0.91 5.30 -51.93 -0.28 0.63 16 35 H 0.12 0.44 8.06 -52.49 -0.42 0.02 16 36 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.08 0.97 5.29 -51.93 -0.27 0.69 16 39 H 0.40 3.68 8.46 -40.82 -0.35 3.33 16 40 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 41 H 0.10 1.73 8.14 -51.91 -0.42 1.31 16 42 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 378.72 15.07 5.71 5.71 Total: -1.00 -38.75 378.72 -6.74 -45.49 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -5.33 Total: 1.03 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -0.75 Total: -3.27 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: 0.09 Total: -40.76 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: 0.25 Total: -19.84 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.71 Total: 17.26 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -38.75 -6.74 -45.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001747095008.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.020 kcal (2) G-P(sol) polarization free energy of solvation -38.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds