Wall clock time and date at job start Tue Mar 31 2020 20:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34181 * 127.02507 * 2 1 4 4 O 1.34214 * 109.12376 * 179.97438 * 3 2 1 5 5 C 1.33649 * 110.90760 * 359.76266 * 4 3 2 6 6 C 1.36420 * 108.40027 * 0.38528 * 5 4 3 7 7 C 1.47380 * 127.19214 * 179.90021 * 6 5 4 8 8 O 1.21616 * 119.99493 * 179.68903 * 7 6 5 9 9 N 1.34774 * 120.00033 * 359.68059 * 7 6 5 10 10 C 1.46496 * 119.99956 * 180.02562 * 9 7 6 11 11 C 1.50695 * 109.47317 * 179.97438 * 10 9 7 12 12 C 1.31007 * 119.99666 * 127.15371 * 11 10 9 13 13 C 1.50694 * 120.00400 * 7.56139 * 12 11 10 14 14 N 1.46501 * 109.47079 * 127.00487 * 13 12 11 15 15 C 1.34781 * 119.99784 * 180.02562 * 14 13 12 16 16 O 1.21285 * 119.99868 * 0.02562 * 15 14 13 17 17 C 1.50702 * 119.99823 * 179.97438 * 15 14 13 18 18 S 1.81000 * 109.47092 * 179.97438 * 17 15 14 19 19 C 1.76194 * 99.99788 * 180.02562 * 18 17 15 20 20 H 1.07998 * 120.00321 * 359.97438 * 19 18 17 21 21 C 1.38804 * 119.99678 * 180.02562 * 19 18 17 22 22 N 1.31636 * 119.99865 * 179.97438 * 21 19 18 23 23 Si 1.86795 * 120.00250 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47033 * 90.00432 * 23 21 19 25 25 H 1.48495 * 109.47660 * 210.00463 * 23 21 19 26 26 H 1.48505 * 109.47043 * 330.00579 * 23 21 19 27 27 H 1.09004 * 109.47209 * 270.03238 * 1 2 3 28 28 H 1.09001 * 109.46743 * 30.02561 * 1 2 3 29 29 H 1.08999 * 109.47344 * 150.02756 * 1 2 3 30 30 H 1.07995 * 125.43332 * 359.97267 * 3 2 1 31 31 H 1.07997 * 125.80159 * 180.27097 * 5 4 3 32 32 H 0.96999 * 119.99873 * 359.97438 * 9 7 6 33 33 H 1.09007 * 109.47196 * 59.99620 * 10 9 7 34 34 H 1.09002 * 109.47238 * 300.00185 * 10 9 7 35 35 H 1.07997 * 120.00206 * 307.15471 * 11 10 9 36 36 H 1.08000 * 119.99391 * 187.56469 * 12 11 10 37 37 H 1.09002 * 109.47093 * 247.00562 * 13 12 11 38 38 H 1.09003 * 109.46867 * 7.00757 * 13 12 11 39 39 H 0.97002 * 120.00184 * 0.02562 * 14 13 12 40 40 H 1.09002 * 109.46937 * 300.00387 * 17 15 14 41 41 H 1.09003 * 109.46824 * 60.00498 * 17 15 14 42 42 H 0.96995 * 119.99994 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0713 0.0000 4 8 3.5922 0.6587 0.0006 5 6 3.6623 -0.6759 0.0061 6 6 2.3922 -1.1739 0.0007 7 6 1.9913 -2.5921 0.0018 8 8 0.8124 -2.8906 0.0021 9 7 2.9312 -3.5580 0.0023 10 6 2.5326 -4.9678 0.0028 11 6 3.7631 -5.8377 0.0027 12 6 3.9027 -6.7750 0.9072 13 6 2.7637 -7.0981 1.8396 14 7 2.4843 -8.5353 1.7896 15 6 1.4985 -9.0569 2.5463 16 8 0.8423 -8.3362 3.2682 17 6 1.2107 -10.5352 2.4945 18 16 -0.1572 -10.9233 3.6145 19 6 -0.2757 -12.6629 3.3614 20 1 0.3943 -13.1553 2.6722 21 6 -1.2310 -13.4004 4.0471 22 7 -1.3199 -14.7001 3.8577 23 14 -2.3904 -12.5488 5.2386 24 1 -3.6097 -12.1092 4.5139 25 1 -2.7706 -13.4931 6.3198 26 1 -1.7126 -11.3669 5.8294 27 1 -0.3634 0.0006 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3634 -0.8902 -0.5134 30 1 1.9895 2.1010 -0.0004 31 1 4.5701 -1.2609 0.0119 32 1 3.8714 -3.3198 0.0016 33 1 1.9394 -5.1780 -0.8872 34 1 1.9392 -5.1773 0.8928 35 1 4.5300 -5.6884 -0.7430 36 1 4.8341 -7.3162 0.9846 37 1 3.0356 -6.8159 2.8567 38 1 1.8758 -6.5445 1.5339 39 1 3.0089 -9.1116 1.2119 40 1 0.9391 -10.8171 1.4772 41 1 2.0984 -11.0891 2.8003 42 1 -1.9872 -15.2155 4.3372 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001747095008.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:45 Heat of formation + Delta-G solvation = -69.652391 kcal Electronic energy + Delta-G solvation = -24627.851642 eV Core-core repulsion = 20700.267189 eV Total energy + Delta-G solvation = -3927.584452 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.51888 -40.78967 -40.47707 -37.77933 -35.80213 -34.81002 -34.67892 -33.99102 -31.73673 -30.99869 -28.19338 -28.05850 -27.77713 -26.19694 -24.20736 -21.91681 -21.44631 -21.37126 -20.31995 -19.71163 -18.81873 -17.94273 -17.73887 -17.20303 -17.17126 -17.05675 -16.74845 -16.48145 -16.32847 -15.79471 -15.64182 -15.32110 -14.95768 -14.81461 -14.49292 -14.38390 -14.29082 -14.12916 -14.00644 -13.55769 -13.44189 -13.35675 -13.20151 -13.02048 -12.65923 -12.47682 -11.95668 -11.86313 -11.27045 -11.18026 -11.12666 -10.65347 -10.54373 -10.47367 -10.29520 -9.84659 -9.61814 -9.00787 -8.52393 -6.23177 0.34681 0.77908 1.02981 1.05652 1.30583 1.46707 1.53888 1.57122 2.02484 2.21688 2.24654 2.27739 2.41328 2.73399 2.85885 3.58075 3.61262 3.66754 3.86964 3.95933 4.08671 4.09473 4.23041 4.33043 4.39389 4.46355 4.48551 4.64696 4.68704 4.75362 4.91491 4.95131 5.03344 5.04858 5.25321 5.33591 5.46239 5.47837 5.70134 5.70671 5.98696 6.10690 6.45829 6.49595 6.93035 7.16888 7.17901 8.59865 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.020844 B = 0.001677 C = 0.001583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.996133 B =16696.069137 C =17684.213386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.170 4.170 3 C -0.032 4.032 4 O -0.173 6.173 5 C 0.052 3.948 6 C -0.273 4.273 7 C 0.579 3.421 8 O -0.583 6.583 9 N -0.705 5.705 10 C 0.130 3.870 11 C -0.140 4.140 12 C -0.140 4.140 13 C 0.129 3.871 14 N -0.706 5.706 15 C 0.532 3.468 16 O -0.566 6.566 17 C -0.110 4.110 18 S -0.181 6.181 19 C -0.528 4.528 20 H 0.064 0.936 21 C 0.047 3.953 22 N -0.915 5.915 23 Si 0.913 3.087 24 H -0.264 1.264 25 H -0.258 1.258 26 H -0.238 1.238 27 H 0.064 0.936 28 H 0.088 0.912 29 H 0.052 0.948 30 H 0.241 0.759 31 H 0.256 0.744 32 H 0.418 0.582 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.161 0.839 36 H 0.156 0.844 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.420 0.580 40 H 0.115 0.885 41 H 0.118 0.882 42 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.209 31.950 -12.605 39.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.172 4.172 3 C -0.097 4.097 4 O -0.068 6.068 5 C -0.019 4.019 6 C -0.278 4.278 7 C 0.368 3.632 8 O -0.464 6.464 9 N -0.358 5.358 10 C 0.007 3.993 11 C -0.159 4.159 12 C -0.159 4.159 13 C 0.006 3.994 14 N -0.360 5.360 15 C 0.318 3.682 16 O -0.445 6.445 17 C -0.261 4.261 18 S 0.045 5.955 19 C -0.676 4.676 20 H 0.082 0.918 21 C -0.159 4.159 22 N -0.553 5.553 23 Si 0.735 3.265 24 H -0.189 1.189 25 H -0.182 1.182 26 H -0.162 1.162 27 H 0.082 0.918 28 H 0.107 0.893 29 H 0.071 0.929 30 H 0.257 0.743 31 H 0.272 0.728 32 H 0.256 0.744 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.179 0.821 36 H 0.173 0.827 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.257 0.743 40 H 0.133 0.867 41 H 0.136 0.864 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 17.463 32.947 -11.383 38.987 hybrid contribution 0.149 -1.663 -0.544 1.756 sum 17.613 31.284 -11.927 37.831 Atomic orbital electron populations 1.20174 0.88879 1.02899 1.02227 1.21695 0.97638 0.91482 1.06353 1.24285 0.78916 1.00565 1.05954 1.83833 1.29814 1.22636 1.70476 1.25147 0.98863 0.80995 0.96872 1.21444 0.95233 0.93215 1.17897 1.17687 0.85166 0.84997 0.75347 1.90789 1.19607 1.84081 1.51954 1.45569 1.10044 1.05102 1.75043 1.20527 0.96792 0.79796 1.02150 1.22943 0.97859 0.96643 0.98430 1.22949 0.98350 1.00078 0.94538 1.20608 0.97814 0.80709 1.00252 1.45650 1.35513 1.09532 1.45294 1.20041 0.79836 0.89043 0.79315 1.90705 1.50278 1.62202 1.41294 1.23266 1.02589 0.95599 1.04603 1.84787 1.44898 1.08049 1.57717 1.22455 1.22798 0.91716 1.30612 0.91754 1.25535 0.97842 0.94941 0.97542 1.70011 1.35711 1.06799 1.42820 0.85890 0.80301 0.80308 0.80017 1.18863 1.18191 1.16215 0.91768 0.89285 0.92937 0.74254 0.72836 0.74430 0.91526 0.92172 0.82119 0.82654 0.91514 0.91910 0.74260 0.86731 0.86401 0.91358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.49 10.00 71.24 0.71 -0.78 16 2 C -0.17 -2.84 6.37 -18.48 -0.12 -2.95 16 3 C -0.03 -0.32 11.96 66.89 0.80 0.48 16 4 O -0.17 -1.69 10.52 4.50 0.05 -1.65 16 5 C 0.05 0.41 11.61 67.40 0.78 1.19 16 6 C -0.27 -4.52 6.31 -18.99 -0.12 -4.64 16 7 C 0.58 12.43 7.81 86.65 0.68 13.11 16 8 O -0.58 -18.60 15.41 -4.08 -0.06 -18.67 16 9 N -0.70 -9.32 5.54 -470.15 -2.60 -11.93 16 10 C 0.13 2.05 5.76 85.63 0.49 2.54 16 11 C -0.14 -1.13 9.63 25.64 0.25 -0.88 16 12 C -0.14 -1.39 9.63 25.64 0.25 -1.14 16 13 C 0.13 2.58 5.76 85.63 0.49 3.07 16 14 N -0.71 -16.05 5.55 -466.78 -2.59 -18.64 16 15 C 0.53 18.46 7.85 87.66 0.69 19.15 16 16 O -0.57 -25.05 15.86 -3.05 -0.05 -25.10 16 17 C -0.11 -4.12 6.16 71.24 0.44 -3.68 16 18 S -0.18 -9.30 18.55 -56.49 -1.05 -10.35 16 19 C -0.53 -30.98 10.04 67.96 0.68 -30.30 16 20 H 0.06 3.95 8.03 -2.91 -0.02 3.93 16 21 C 0.05 2.78 5.50 84.86 0.47 3.25 16 22 N -0.92 -56.01 13.97 21.65 0.30 -55.71 16 23 Si 0.91 45.70 27.74 68.60 1.90 47.61 16 24 H -0.26 -12.97 7.11 99.48 0.71 -12.26 16 25 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 26 H -0.24 -11.96 6.74 99.48 0.67 -11.29 16 27 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 28 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.05 1.23 6.91 -2.39 -0.02 1.22 16 30 H 0.24 0.50 8.06 -2.91 -0.02 0.48 16 31 H 0.26 -0.76 7.47 -2.91 -0.02 -0.79 16 32 H 0.42 1.75 7.43 -92.71 -0.69 1.06 16 33 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.06 1.31 5.30 -2.39 -0.01 1.30 16 35 H 0.16 0.25 8.06 -2.91 -0.02 0.23 16 36 H 0.16 0.73 8.06 -2.91 -0.02 0.71 16 37 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.06 1.54 5.29 -2.39 -0.01 1.53 16 39 H 0.42 6.40 8.46 -92.71 -0.78 5.62 16 40 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 41 H 0.12 3.97 8.14 -2.39 -0.02 3.95 16 42 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -89.99 378.72 1.96 -88.04 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -0.43 Total: 7.98 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: 6.49 Total: -1.59 kcal Atomic # 7 Polarization: -81.38 SS G_CDS: -4.89 Total: -86.27 kcal Atomic # 8 Polarization: -45.35 SS G_CDS: -0.06 Total: -45.41 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.90 Total: 47.61 kcal Atomic # 16 Polarization: -9.30 SS G_CDS: -1.05 Total: -10.35 kcal Total: -89.99 1.96 -88.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001747095008.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.387 kcal (2) G-P(sol) polarization free energy of solvation -89.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds