Wall clock time and date at job start Tue Mar 31 2020 20:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.40369 * 126.64898 * 2 1 4 4 C 1.35128 * 107.11308 * 180.30269 * 3 2 1 5 5 O 1.33925 * 108.77142 * 359.74784 * 4 3 2 6 6 C 1.34926 * 109.38456 * 359.97438 * 5 4 3 7 7 C 1.46652 * 125.98878 * 179.97438 * 6 5 4 8 8 O 1.21687 * 119.99872 * 180.02562 * 7 6 5 9 9 N 1.34778 * 119.99783 * 0.02880 * 7 6 5 10 10 C 1.46501 * 119.99561 * 174.99677 * 9 7 6 11 11 C 1.53003 * 115.54917 * 279.61160 * 10 9 7 12 12 N 1.46502 * 109.47212 * 324.96407 * 11 10 9 13 13 C 1.34775 * 119.99897 * 174.90170 * 12 11 10 14 14 O 1.21280 * 120.00313 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99879 * 180.02562 * 13 12 11 16 16 S 1.81005 * 109.47021 * 180.02562 * 15 13 12 17 17 C 1.76201 * 99.99931 * 180.02562 * 16 15 13 18 18 H 1.08004 * 119.99752 * 0.02562 * 17 16 15 19 19 C 1.38793 * 120.00118 * 179.97438 * 17 16 15 20 20 N 1.31630 * 119.99894 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00168 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47054 * 60.00355 * 21 19 17 23 23 H 1.48497 * 109.47151 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47150 * 300.00471 * 21 19 17 25 25 C 1.53000 * 117.49918 * 133.90755 * 10 9 7 26 26 C 1.52999 * 59.99979 * 252.50648 * 25 10 9 27 27 H 1.09001 * 109.46608 * 270.12618 * 1 2 3 28 28 H 1.09001 * 109.46540 * 30.12596 * 1 2 3 29 29 H 1.09001 * 109.46903 * 150.12391 * 1 2 3 30 30 H 1.07999 * 126.43609 * 0.05548 * 3 2 1 31 31 H 1.08001 * 125.61247 * 179.71827 * 4 3 2 32 32 H 0.97000 * 120.00557 * 354.71481 * 9 7 6 33 33 H 1.09001 * 109.46850 * 84.96461 * 11 10 9 34 34 H 1.09001 * 109.47605 * 204.96655 * 11 10 9 35 35 H 0.97000 * 119.99984 * 354.90894 * 12 11 10 36 36 H 1.08990 * 109.47385 * 300.00745 * 15 13 12 37 37 H 1.09006 * 109.46734 * 60.00690 * 15 13 12 38 38 H 0.97000 * 120.00309 * 179.97438 * 20 19 17 39 39 H 1.09004 * 117.49981 * 0.02562 * 25 10 9 40 40 H 1.09003 * 117.49887 * 145.01598 * 25 10 9 41 41 H 1.08998 * 117.49977 * 252.50916 * 26 25 10 42 42 H 1.09001 * 117.51429 * 107.47936 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3450 1.1262 0.0000 4 6 3.6184 0.6743 -0.0068 5 8 3.6006 -0.6648 -0.0054 6 6 2.3220 -1.0956 0.0029 7 6 1.8842 -2.4953 0.0065 8 8 0.6968 -2.7614 0.0136 9 7 2.7971 -3.4868 0.0019 10 6 2.3639 -4.8817 0.1160 11 6 2.0444 -5.3595 1.5340 12 7 2.9543 -4.7138 2.4835 13 6 2.7928 -4.9049 3.8078 14 8 1.8946 -5.6116 4.2135 15 6 3.7285 -4.2403 4.7846 16 16 3.2558 -4.6887 6.4733 17 6 4.4783 -3.8002 7.3793 18 1 5.2151 -3.2092 6.8557 19 6 4.4936 -3.8590 8.7659 20 7 3.5953 -4.5790 9.4041 21 14 5.7901 -2.9177 9.7264 22 1 5.6698 -1.4676 9.4303 23 1 5.5909 -3.1447 11.1804 24 1 7.1406 -3.3931 9.3321 25 6 2.9833 -5.8950 -0.8486 26 6 1.5282 -5.4579 -1.0287 27 1 -0.3632 0.0023 1.0277 28 1 -0.3632 0.8889 -0.5158 29 1 -0.3633 -0.8911 -0.5119 30 1 2.0307 2.1595 0.0008 31 1 4.5047 1.2915 -0.0130 32 1 3.7405 -3.2772 -0.0812 33 1 1.0155 -5.0987 1.7820 34 1 2.1687 -6.4409 1.5897 35 1 3.6729 -4.1488 2.1590 36 1 4.7490 -4.5717 4.5932 37 1 3.6694 -3.1584 4.6655 38 1 3.6062 -4.6204 10.3732 39 1 3.7134 -5.5239 -1.5679 40 1 3.1635 -6.9023 -0.4730 41 1 0.7510 -6.1776 -0.7717 42 1 1.3003 -4.7990 -1.8666 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001747758769.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:08 Heat of formation + Delta-G solvation = -29.662557 kcal Electronic energy + Delta-G solvation = -26333.700307 eV Core-core repulsion = 22407.849944 eV Total energy + Delta-G solvation = -3925.850363 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.01013 -40.34225 -38.95289 -37.61742 -34.50013 -33.93856 -33.26386 -32.41629 -30.63460 -29.74362 -27.90746 -26.39474 -25.39955 -23.84037 -22.91410 -21.93043 -20.49670 -20.25822 -19.94736 -18.48593 -17.90973 -17.01449 -16.70607 -16.34196 -16.28477 -15.55396 -15.19588 -14.90693 -14.79403 -14.75677 -14.28734 -13.88232 -13.82522 -13.36680 -13.31624 -13.28424 -13.14829 -12.83929 -12.64550 -12.53085 -12.08293 -11.91726 -11.76884 -11.29232 -11.03432 -11.03263 -10.76403 -10.62177 -10.24210 -10.01368 -9.82449 -9.59028 -9.36506 -9.05166 -8.90283 -8.84134 -8.22210 -6.48233 -6.20141 -3.90666 0.75180 2.02802 2.29770 2.73758 2.89053 3.03641 3.12208 3.23959 3.25788 3.29124 3.36437 3.73913 4.21560 4.23185 4.35794 4.46310 4.47355 4.54438 4.68276 5.13023 5.14738 5.17278 5.22216 5.23684 5.27599 5.44288 5.49177 5.51852 5.57302 5.64860 5.74209 5.74726 5.82041 5.86521 5.90996 6.05671 6.14754 6.18305 6.49778 6.62684 7.09708 7.60225 7.71653 7.79054 8.36181 8.63344 9.24802 10.87275 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.010558 B = 0.002963 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.340571 B = 9446.161582 C =11148.815006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.081 4.081 3 C -0.226 4.226 4 C 0.000 4.000 5 O -0.165 6.165 6 C -0.091 4.091 7 C 0.611 3.389 8 O -0.502 6.502 9 N -0.694 5.694 10 C 0.083 3.917 11 C 0.154 3.846 12 N -0.733 5.733 13 C 0.532 3.468 14 O -0.516 6.516 15 C -0.152 4.152 16 S -0.058 6.058 17 C -0.537 4.537 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C -0.167 4.167 26 C -0.149 4.149 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.157 0.843 31 H 0.211 0.789 32 H 0.407 0.593 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.395 0.605 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.269 0.731 39 H 0.101 0.899 40 H 0.111 0.889 41 H 0.108 0.892 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.825 7.531 -26.558 27.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.084 4.084 3 C -0.245 4.245 4 C -0.070 4.070 5 O -0.060 6.060 6 C -0.143 4.143 7 C 0.398 3.602 8 O -0.378 6.378 9 N -0.346 5.346 10 C -0.005 4.005 11 C 0.028 3.972 12 N -0.388 5.388 13 C 0.318 3.682 14 O -0.390 6.390 15 C -0.303 4.303 16 S 0.169 5.831 17 C -0.685 4.685 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.200 1.200 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.205 4.205 26 C -0.188 4.188 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.174 0.826 31 H 0.228 0.772 32 H 0.243 0.757 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.229 0.771 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.079 0.921 39 H 0.119 0.881 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.383 5.863 -25.670 26.367 hybrid contribution 2.796 2.246 -0.020 3.586 sum 1.412 8.109 -25.689 26.976 Atomic orbital electron populations 1.20461 0.88105 1.03514 1.03282 1.20686 0.97774 0.90991 0.98905 1.21779 0.92453 1.00275 1.09994 1.24382 1.00040 0.80507 1.02041 1.84043 1.28233 1.22813 1.70947 1.21775 0.81645 0.94601 1.16283 1.16489 0.85738 0.81598 0.76381 1.90871 1.15538 1.82123 1.49230 1.45134 1.10029 1.04339 1.75052 1.20862 1.06529 0.80824 0.92284 1.21011 0.95069 0.97106 0.83973 1.45840 1.34362 1.52789 1.05823 1.20297 0.85127 0.80841 0.81951 1.90706 1.32785 1.37537 1.78000 1.23518 1.01263 1.03177 1.02331 1.85401 1.42943 1.64933 0.89870 1.22830 1.17146 1.34676 0.93825 0.91024 1.24983 0.96422 0.95484 0.96639 1.70008 1.33494 1.37880 1.08904 0.86229 0.80944 0.79905 0.78453 1.19957 1.20791 1.19943 1.23503 0.97029 0.99002 1.00919 1.23240 0.94278 1.02564 0.98676 0.90429 0.91436 0.89507 0.82574 0.77233 0.75711 0.90260 0.90421 0.77107 0.89268 0.89415 0.92124 0.88053 0.87112 0.87357 0.88045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.97 9.81 36.01 0.35 -0.61 16 2 C -0.08 -0.87 6.20 -104.43 -0.65 -1.51 16 3 C -0.23 -1.89 10.83 -39.89 -0.43 -2.32 16 4 C 0.00 0.00 12.08 29.63 0.36 0.36 16 5 O -0.16 -1.55 10.41 4.97 0.05 -1.50 16 6 C -0.09 -1.03 7.13 -36.80 -0.26 -1.29 16 7 C 0.61 7.31 7.71 -12.86 -0.10 7.21 16 8 O -0.50 -7.30 14.31 5.20 0.07 -7.23 16 9 N -0.69 -6.48 4.39 -48.91 -0.21 -6.69 16 10 C 0.08 0.78 2.02 -131.82 -0.27 0.52 16 11 C 0.15 1.95 5.90 -4.04 -0.02 1.93 16 12 N -0.73 -10.46 5.40 -60.29 -0.33 -10.78 16 13 C 0.53 10.37 7.85 -10.98 -0.09 10.28 16 14 O -0.52 -12.14 15.86 5.56 0.09 -12.05 16 15 C -0.15 -3.17 6.16 36.01 0.22 -2.95 16 16 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 17 C -0.54 -15.47 9.50 30.94 0.29 -15.18 16 18 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 19 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 20 N -0.87 -26.41 13.22 55.49 0.73 -25.68 16 21 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 25 C -0.17 -1.13 10.10 -26.73 -0.27 -1.40 16 26 C -0.15 -1.24 9.56 -26.73 -0.26 -1.49 16 27 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.09 0.97 6.45 -51.93 -0.34 0.63 16 30 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 31 H 0.21 0.65 8.06 -52.49 -0.42 0.23 16 32 H 0.41 2.91 8.60 -40.82 -0.35 2.56 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.08 0.94 7.91 -51.93 -0.41 0.53 16 35 H 0.40 4.61 7.76 -40.82 -0.32 4.30 16 36 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 37 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 38 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 39 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.11 0.68 8.05 -51.93 -0.42 0.26 16 41 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 381.48 15.07 5.75 5.75 Total: -1.00 -37.16 381.48 -7.89 -45.05 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -5.60 Total: 4.86 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -1.21 Total: -4.42 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: 0.19 Total: -43.15 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: 0.21 Total: -20.78 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.16 -7.89 -45.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001747758769.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.392 kcal (2) G-P(sol) polarization free energy of solvation -37.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds