Wall clock time and date at job start Tue Mar 31 2020 20:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.40369 * 126.64898 * 2 1 4 4 C 1.35128 * 107.11308 * 180.30269 * 3 2 1 5 5 O 1.33925 * 108.77142 * 359.74784 * 4 3 2 6 6 C 1.34926 * 109.38456 * 359.97438 * 5 4 3 7 7 C 1.46652 * 125.98878 * 179.97438 * 6 5 4 8 8 O 1.21687 * 119.99872 * 180.02562 * 7 6 5 9 9 N 1.34778 * 119.99783 * 0.02880 * 7 6 5 10 10 C 1.46501 * 119.99561 * 174.99677 * 9 7 6 11 11 C 1.53003 * 115.54917 * 279.61160 * 10 9 7 12 12 N 1.46502 * 109.47212 * 324.96407 * 11 10 9 13 13 C 1.34775 * 119.99897 * 174.90170 * 12 11 10 14 14 O 1.21280 * 120.00313 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99879 * 180.02562 * 13 12 11 16 16 S 1.81005 * 109.47021 * 180.02562 * 15 13 12 17 17 C 1.76201 * 99.99931 * 180.02562 * 16 15 13 18 18 H 1.08004 * 119.99752 * 0.02562 * 17 16 15 19 19 C 1.38793 * 120.00118 * 179.97438 * 17 16 15 20 20 N 1.31630 * 119.99894 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00168 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47054 * 60.00355 * 21 19 17 23 23 H 1.48497 * 109.47151 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47150 * 300.00471 * 21 19 17 25 25 C 1.53000 * 117.49918 * 133.90755 * 10 9 7 26 26 C 1.52999 * 59.99979 * 252.50648 * 25 10 9 27 27 H 1.09001 * 109.46608 * 270.12618 * 1 2 3 28 28 H 1.09001 * 109.46540 * 30.12596 * 1 2 3 29 29 H 1.09001 * 109.46903 * 150.12391 * 1 2 3 30 30 H 1.07999 * 126.43609 * 0.05548 * 3 2 1 31 31 H 1.08001 * 125.61247 * 179.71827 * 4 3 2 32 32 H 0.97000 * 120.00557 * 354.71481 * 9 7 6 33 33 H 1.09001 * 109.46850 * 84.96461 * 11 10 9 34 34 H 1.09001 * 109.47605 * 204.96655 * 11 10 9 35 35 H 0.97000 * 119.99984 * 354.90894 * 12 11 10 36 36 H 1.08990 * 109.47385 * 300.00745 * 15 13 12 37 37 H 1.09006 * 109.46734 * 60.00690 * 15 13 12 38 38 H 0.97000 * 120.00309 * 179.97438 * 20 19 17 39 39 H 1.09004 * 117.49981 * 0.02562 * 25 10 9 40 40 H 1.09003 * 117.49887 * 145.01598 * 25 10 9 41 41 H 1.08998 * 117.49977 * 252.50916 * 26 25 10 42 42 H 1.09001 * 117.51429 * 107.47936 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3450 1.1262 0.0000 4 6 3.6184 0.6743 -0.0068 5 8 3.6006 -0.6648 -0.0054 6 6 2.3220 -1.0956 0.0029 7 6 1.8842 -2.4953 0.0065 8 8 0.6968 -2.7614 0.0136 9 7 2.7971 -3.4868 0.0019 10 6 2.3639 -4.8817 0.1160 11 6 2.0444 -5.3595 1.5340 12 7 2.9543 -4.7138 2.4835 13 6 2.7928 -4.9049 3.8078 14 8 1.8946 -5.6116 4.2135 15 6 3.7285 -4.2403 4.7846 16 16 3.2558 -4.6887 6.4733 17 6 4.4783 -3.8002 7.3793 18 1 5.2151 -3.2092 6.8557 19 6 4.4936 -3.8590 8.7659 20 7 3.5953 -4.5790 9.4041 21 14 5.7901 -2.9177 9.7264 22 1 5.6698 -1.4676 9.4303 23 1 5.5909 -3.1447 11.1804 24 1 7.1406 -3.3931 9.3321 25 6 2.9833 -5.8950 -0.8486 26 6 1.5282 -5.4579 -1.0287 27 1 -0.3632 0.0023 1.0277 28 1 -0.3632 0.8889 -0.5158 29 1 -0.3633 -0.8911 -0.5119 30 1 2.0307 2.1595 0.0008 31 1 4.5047 1.2915 -0.0130 32 1 3.7405 -3.2772 -0.0812 33 1 1.0155 -5.0987 1.7820 34 1 2.1687 -6.4409 1.5897 35 1 3.6729 -4.1488 2.1590 36 1 4.7490 -4.5717 4.5932 37 1 3.6694 -3.1584 4.6655 38 1 3.6062 -4.6204 10.3732 39 1 3.7134 -5.5239 -1.5679 40 1 3.1635 -6.9023 -0.4730 41 1 0.7510 -6.1776 -0.7717 42 1 1.3003 -4.7990 -1.8666 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001747758769.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:07 Heat of formation + Delta-G solvation = -56.819969 kcal Electronic energy + Delta-G solvation = -26334.877941 eV Core-core repulsion = 22407.849944 eV Total energy + Delta-G solvation = -3927.027997 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.69130 -41.28573 -40.35482 -38.52622 -35.32415 -35.18483 -34.59162 -34.08480 -31.36552 -31.25730 -28.69435 -27.88259 -27.30549 -24.61514 -23.53790 -22.60238 -21.83294 -21.18991 -20.80185 -19.86620 -19.20875 -18.15968 -17.80139 -17.41899 -17.01326 -16.88718 -16.74816 -16.50593 -15.97277 -15.74364 -15.57795 -15.07114 -14.74497 -14.62083 -14.55181 -14.37406 -14.09513 -13.93182 -13.60681 -13.50913 -13.43476 -13.18257 -12.86729 -12.82355 -12.64094 -12.43244 -12.02202 -11.75902 -11.48815 -11.13594 -11.10714 -10.99884 -10.70383 -10.39541 -10.30263 -10.15803 -9.60792 -8.68715 -8.35027 -6.14083 -0.00600 1.23874 1.38278 1.43893 1.44623 1.53587 1.55390 1.58624 2.01355 2.05859 2.23586 2.27074 2.65922 2.99007 3.30044 3.44404 3.70050 3.77582 3.79864 3.84783 3.92625 4.00766 4.23789 4.42970 4.44842 4.51189 4.57242 4.59993 4.65041 4.70568 4.73837 4.75549 4.97354 5.08183 5.15011 5.17667 5.23556 5.37332 5.40462 5.46323 5.81892 6.18785 6.35483 6.40522 6.97891 7.05716 7.16270 8.74120 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.010558 B = 0.002963 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.340571 B = 9446.161582 C =11148.815006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.098 4.098 3 C -0.240 4.240 4 C 0.017 3.983 5 O -0.167 6.167 6 C -0.120 4.120 7 C 0.605 3.395 8 O -0.540 6.540 9 N -0.680 5.680 10 C 0.064 3.936 11 C 0.155 3.845 12 N -0.707 5.707 13 C 0.532 3.468 14 O -0.564 6.564 15 C -0.127 4.127 16 S -0.149 6.149 17 C -0.549 4.549 18 H 0.083 0.917 19 C 0.014 3.986 20 N -0.912 5.912 21 Si 1.000 3.000 22 H -0.262 1.262 23 H -0.279 1.279 24 H -0.260 1.260 25 C -0.132 4.132 26 C -0.154 4.154 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.068 0.932 30 H 0.179 0.821 31 H 0.255 0.745 32 H 0.419 0.581 33 H 0.047 0.953 34 H 0.087 0.913 35 H 0.411 0.589 36 H 0.114 0.886 37 H 0.103 0.897 38 H 0.272 0.728 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.108 0.892 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.930 9.267 -28.231 29.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.101 4.101 3 C -0.259 4.259 4 C -0.053 4.053 5 O -0.062 6.062 6 C -0.171 4.171 7 C 0.393 3.607 8 O -0.419 6.419 9 N -0.332 5.332 10 C -0.024 4.024 11 C 0.030 3.970 12 N -0.361 5.361 13 C 0.318 3.682 14 O -0.442 6.442 15 C -0.279 4.279 16 S 0.078 5.922 17 C -0.696 4.696 18 H 0.101 0.899 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.821 3.179 22 H -0.187 1.187 23 H -0.204 1.204 24 H -0.185 1.185 25 C -0.169 4.169 26 C -0.192 4.192 27 H 0.086 0.914 28 H 0.108 0.892 29 H 0.087 0.913 30 H 0.196 0.804 31 H 0.271 0.729 32 H 0.257 0.743 33 H 0.066 0.934 34 H 0.105 0.895 35 H 0.248 0.752 36 H 0.132 0.868 37 H 0.121 0.879 38 H 0.080 0.920 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.127 0.873 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.775 7.610 -27.408 28.500 hybrid contribution 1.809 1.757 0.362 2.548 sum 3.584 9.367 -27.046 28.845 Atomic orbital electron populations 1.20421 0.88362 1.03730 1.02666 1.21026 0.98144 0.92133 0.98753 1.22105 0.92560 1.00721 1.10509 1.25311 1.01256 0.79761 0.98923 1.84036 1.27193 1.24023 1.70979 1.21664 0.82583 0.94375 1.18525 1.16722 0.85582 0.82429 0.75927 1.90847 1.17051 1.82824 1.51131 1.45019 1.10319 1.03866 1.74007 1.20736 1.09338 0.81489 0.90810 1.21061 0.93003 0.97579 0.85350 1.45564 1.34428 1.51848 1.04231 1.20111 0.84320 0.80395 0.83357 1.90694 1.34644 1.39824 1.79038 1.23342 1.02584 1.04112 0.97819 1.85603 1.44652 1.66166 0.95795 1.23176 1.17182 1.34776 0.94493 0.89862 1.26146 0.98836 0.96328 0.97789 1.70180 1.35712 1.39615 1.09303 0.84990 0.77836 0.78547 0.76539 1.18667 1.20372 1.18454 1.23621 0.96029 0.98426 0.98872 1.23278 0.95695 1.02537 0.97692 0.91442 0.89218 0.91269 0.80391 0.72880 0.74265 0.93447 0.89498 0.75212 0.86819 0.87863 0.91951 0.85904 0.85828 0.87317 0.88370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.95 9.81 71.24 0.70 -1.25 16 2 C -0.10 -2.05 6.20 -19.74 -0.12 -2.17 16 3 C -0.24 -3.49 10.83 22.07 0.24 -3.25 16 4 C 0.02 0.19 12.08 67.10 0.81 1.00 16 5 O -0.17 -2.79 10.41 -5.12 -0.05 -2.84 16 6 C -0.12 -2.63 7.13 24.07 0.17 -2.46 16 7 C 0.61 14.55 7.71 86.44 0.67 15.22 16 8 O -0.54 -16.46 14.31 -4.31 -0.06 -16.52 16 9 N -0.68 -11.91 4.39 -426.86 -1.87 -13.78 16 10 C 0.06 1.14 2.02 3.60 0.01 1.14 16 11 C 0.16 3.91 5.90 86.38 0.51 4.42 16 12 N -0.71 -19.54 5.40 -463.05 -2.50 -22.04 16 13 C 0.53 20.79 7.85 87.66 0.69 21.48 16 14 O -0.56 -27.41 15.86 -3.03 -0.05 -27.46 16 15 C -0.13 -5.23 6.16 71.24 0.44 -4.79 16 16 S -0.15 -8.47 20.57 -56.49 -1.16 -9.63 16 17 C -0.55 -31.65 9.50 67.95 0.65 -31.00 16 18 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 19 C 0.01 0.79 5.49 84.86 0.47 1.26 16 20 N -0.91 -56.55 13.22 21.65 0.29 -56.26 16 21 Si 1.00 43.61 29.55 68.60 2.03 45.64 16 22 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 23 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 24 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 25 C -0.13 -1.41 10.10 30.59 0.31 -1.10 16 26 C -0.15 -2.39 9.56 30.59 0.29 -2.10 16 27 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.07 1.65 6.45 -2.39 -0.02 1.64 16 30 H 0.18 1.65 8.06 -2.91 -0.02 1.63 16 31 H 0.26 0.33 8.06 -2.91 -0.02 0.31 16 32 H 0.42 5.08 8.60 -92.71 -0.80 4.29 16 33 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.09 2.05 7.91 -2.39 -0.02 2.03 16 35 H 0.41 8.76 7.76 -92.71 -0.72 8.04 16 36 H 0.11 4.11 8.14 -2.40 -0.02 4.09 16 37 H 0.10 3.92 8.14 -2.39 -0.02 3.90 16 38 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 39 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.12 1.08 8.05 -2.39 -0.02 1.06 16 41 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -85.13 381.48 1.99 -83.14 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: -0.44 Total: 23.37 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: 5.82 Total: -3.62 kcal Atomic # 7 Polarization: -88.00 SS G_CDS: -4.09 Total: -92.08 kcal Atomic # 8 Polarization: -46.66 SS G_CDS: -0.16 Total: -46.82 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -1.16 Total: -9.63 kcal Total: -85.13 1.99 -83.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001747758769.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.320 kcal (2) G-P(sol) polarization free energy of solvation -85.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds