Wall clock time and date at job start Tue Mar 31 2020 21:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 120.00172 * 2 1 4 4 N 1.46502 * 109.47297 * 125.00301 * 3 2 1 5 5 S 1.65590 * 120.00330 * 165.27692 * 4 3 2 6 6 O 1.42108 * 106.40352 * 178.26773 * 5 4 3 7 7 O 1.42100 * 106.40628 * 311.18532 * 5 4 3 8 8 C 1.76196 * 107.21791 * 64.72811 * 5 4 3 9 9 C 1.38382 * 119.84665 * 269.72675 * 8 5 4 10 10 C 1.37936 * 120.15165 * 179.72207 * 9 8 5 11 11 C 1.39654 * 119.84286 * 0.57631 * 10 9 8 12 12 C 1.47725 * 120.14537 * 179.68470 * 11 10 9 13 13 O 1.21592 * 119.99980 * 144.26804 * 12 11 10 14 14 N 1.34777 * 120.00206 * 324.25707 * 12 11 10 15 15 C 1.36867 * 120.00327 * 186.58938 * 14 12 11 16 16 H 1.07999 * 119.99882 * 345.99930 * 15 14 12 17 17 C 1.39054 * 120.00451 * 166.00264 * 15 14 12 18 18 N 1.31362 * 119.99421 * 35.18534 * 17 15 14 19 19 Si 1.86797 * 120.00116 * 215.18300 * 17 15 14 20 20 H 1.48501 * 109.47083 * 60.00261 * 19 17 15 21 21 H 1.48499 * 109.46829 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47245 * 300.00230 * 19 17 15 23 23 C 1.46506 * 119.99974 * 6.58869 * 14 12 11 24 24 C 1.52998 * 109.46913 * 99.51905 * 23 14 12 25 25 C 1.39638 * 119.70022 * 359.69590 * 11 10 9 26 26 C 1.37939 * 119.84836 * 0.02562 * 25 11 10 27 27 H 1.07999 * 119.99895 * 180.02562 * 1 2 3 28 28 H 1.07998 * 119.99720 * 359.97438 * 1 2 3 29 29 H 1.08002 * 120.00180 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.46994 * 5.00825 * 3 2 1 31 31 H 1.09005 * 109.47735 * 245.00492 * 3 2 1 32 32 H 0.97001 * 119.99540 * 345.00489 * 4 3 2 33 33 H 1.07999 * 119.92520 * 359.97438 * 9 8 5 34 34 H 1.08000 * 120.08066 * 180.25050 * 10 9 8 35 35 H 0.97000 * 119.99453 * 179.97438 * 18 17 15 36 36 H 1.08998 * 109.47004 * 219.52267 * 23 14 12 37 37 H 1.09005 * 109.46981 * 339.52023 * 23 14 12 38 38 H 1.09001 * 109.46716 * 195.31889 * 24 23 14 39 39 H 1.09001 * 109.47187 * 315.31517 * 24 23 14 40 40 H 1.08998 * 109.47101 * 75.31924 * 24 23 14 41 41 H 1.08005 * 120.07881 * 179.97438 * 25 11 10 42 42 H 1.08002 * 119.92597 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9939 1.3318 1.1314 5 16 4.2024 2.4627 1.1831 6 8 4.8952 2.2540 2.4062 7 8 4.8394 2.4276 -0.0866 8 6 3.4331 4.0427 1.3103 9 6 3.1107 4.7461 0.1630 10 6 2.5031 5.9810 0.2552 11 6 2.2243 6.5264 1.5102 12 6 1.5801 7.8515 1.6168 13 8 0.7809 8.0692 2.5069 14 7 1.8784 8.8194 0.7275 15 6 1.3876 10.0849 0.9030 16 1 0.5907 10.2618 1.6100 17 6 1.9150 11.1429 0.1708 18 7 2.3103 10.9522 -1.0673 19 14 2.0611 12.8353 0.9478 20 1 2.9360 12.7564 2.1451 21 1 2.6503 13.7813 -0.0336 22 1 0.7139 13.3135 1.3498 23 6 2.7281 8.5168 -0.4270 24 6 1.8514 8.2956 -1.6613 25 6 2.5575 5.8136 2.6639 26 6 3.1595 4.5771 2.5570 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5399 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0897 31 1 2.6213 1.4027 -0.9314 32 1 2.8995 0.6896 1.8522 33 1 3.3317 4.3255 -0.8068 34 1 2.2484 6.5272 -0.6410 35 1 2.6778 11.6903 -1.5782 36 1 3.4062 9.3508 -0.6076 37 1 3.3066 7.6151 -0.2259 38 1 2.4386 7.8118 -2.4419 39 1 1.0054 7.6611 -1.3971 40 1 1.4859 9.2562 -2.0242 41 1 2.3450 6.2298 3.6376 42 1 3.4181 4.0249 3.4484 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067687815.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:17 Heat of formation + Delta-G solvation = -23.675534 kcal Electronic energy + Delta-G solvation = -27168.764974 eV Core-core repulsion = 23243.174228 eV Total energy + Delta-G solvation = -3925.590746 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -39.79587 -37.69023 -37.31750 -36.56895 -35.87923 -35.38540 -32.63939 -32.55753 -30.93019 -30.83629 -29.59822 -25.88761 -25.70189 -23.49493 -22.58134 -22.22258 -20.55861 -19.74905 -19.46294 -18.01199 -17.41767 -17.10090 -16.77941 -16.51228 -15.53403 -15.17464 -14.83678 -14.69273 -14.56671 -14.32281 -13.92005 -13.86517 -13.66401 -13.30104 -13.19471 -12.74165 -12.59168 -12.29312 -12.20229 -12.12398 -12.04676 -11.94288 -11.51327 -11.35044 -11.26993 -11.05113 -10.85355 -10.71001 -10.55251 -10.38229 -10.15610 -10.10591 -9.58691 -9.03119 -8.90866 -8.74565 -8.51091 -8.11745 -6.77130 -3.92960 0.32415 0.81418 1.54516 1.84573 2.93983 3.05494 3.12853 3.17187 3.40914 3.71878 3.89041 4.14120 4.28736 4.50078 4.54728 4.74372 4.79687 4.98545 5.03734 5.09729 5.27583 5.35733 5.45590 5.53375 5.57888 5.70321 5.86988 5.99532 6.11872 6.21865 6.26968 6.29699 6.30667 6.35491 6.42821 6.55647 6.69060 6.75010 7.03245 7.06456 7.22994 7.52800 7.87017 8.23904 8.91745 9.13592 9.76762 10.21950 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.018846 B = 0.002923 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.393571 B = 9577.828178 C = 9790.473952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.168 4.168 3 C 0.141 3.859 4 N -1.116 6.116 5 S 2.699 3.301 6 O -0.963 6.963 7 O -0.960 6.960 8 C -0.688 4.688 9 C -0.031 4.031 10 C -0.145 4.145 11 C -0.028 4.028 12 C 0.446 3.554 13 O -0.592 6.592 14 N -0.411 5.411 15 C -0.314 4.314 16 H 0.112 0.888 17 C 0.047 3.953 18 N -0.830 5.830 19 Si 0.914 3.086 20 H -0.270 1.270 21 H -0.282 1.282 22 H -0.269 1.269 23 C 0.084 3.916 24 C -0.158 4.158 25 C -0.107 4.107 26 C -0.026 4.026 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.116 0.884 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.418 0.582 33 H 0.137 0.863 34 H 0.158 0.842 35 H 0.275 0.725 36 H 0.102 0.898 37 H 0.061 0.939 38 H 0.041 0.959 39 H 0.035 0.965 40 H 0.101 0.899 41 H 0.136 0.864 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.957 -17.006 -1.813 17.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.187 4.187 3 C 0.016 3.984 4 N -0.875 5.875 5 S 2.791 3.209 6 O -0.953 6.953 7 O -0.950 6.950 8 C -0.777 4.777 9 C -0.050 4.050 10 C -0.165 4.165 11 C -0.032 4.032 12 C 0.237 3.763 13 O -0.480 6.480 14 N -0.126 5.126 15 C -0.440 4.440 16 H 0.130 0.870 17 C -0.161 4.161 18 N -0.465 5.465 19 Si 0.739 3.261 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.194 1.194 23 C -0.038 4.038 24 C -0.215 4.215 25 C -0.127 4.127 26 C -0.045 4.045 27 H 0.120 0.880 28 H 0.120 0.880 29 H 0.134 0.866 30 H 0.091 0.909 31 H 0.108 0.892 32 H 0.252 0.748 33 H 0.155 0.845 34 H 0.175 0.825 35 H 0.086 0.914 36 H 0.120 0.880 37 H 0.079 0.921 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.119 0.881 41 H 0.154 0.846 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.575 -16.749 -1.807 16.919 hybrid contribution -0.543 1.069 0.495 1.297 sum 1.032 -15.680 -1.312 15.769 Atomic orbital electron populations 1.24018 0.95838 1.02529 0.98386 1.22935 0.96006 0.97988 1.01778 1.20442 0.92159 0.96775 0.89043 1.55555 1.50518 1.49358 1.32116 1.01600 0.72737 0.73114 0.73463 1.93581 1.70321 1.85503 1.45895 1.93571 1.72129 1.86603 1.42721 1.30597 1.22969 1.24229 0.99926 1.20789 0.93559 0.93953 0.96739 1.22318 0.99576 0.95702 0.98869 1.20686 0.93651 0.95201 0.93658 1.17673 0.88379 0.84200 0.86053 1.90623 1.38223 1.81324 1.37807 1.43830 1.40750 1.09037 1.18955 1.19705 1.19483 0.81408 1.23437 0.87028 1.25382 0.95861 1.00661 0.94209 1.70121 1.36628 1.33938 1.05847 0.86192 0.79478 0.80749 0.79694 1.19550 1.20770 1.19392 1.22339 0.94450 1.01303 0.85751 1.22200 0.98647 1.03817 0.96870 1.21275 0.98310 0.94329 0.98787 1.20723 0.93250 0.95102 0.95459 0.87966 0.87975 0.86611 0.90930 0.89245 0.74788 0.84515 0.82492 0.91403 0.88031 0.92131 0.93967 0.94647 0.88062 0.84608 0.84524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.09 14.32 29.01 0.42 -0.67 16 2 C -0.17 -1.15 9.66 -36.03 -0.35 -1.50 16 3 C 0.14 1.16 6.66 -5.19 -0.03 1.13 16 4 N -1.12 -9.92 5.99 -11.66 -0.07 -9.99 16 5 S 2.70 33.14 5.73 -107.50 -0.62 32.53 16 6 O -0.96 -14.04 17.27 -57.17 -0.99 -15.03 16 7 O -0.96 -13.96 16.74 -57.17 -0.96 -14.92 16 8 C -0.69 -9.68 5.95 -39.48 -0.23 -9.92 16 9 C -0.03 -0.45 9.50 -39.64 -0.38 -0.83 16 10 C -0.15 -2.49 7.39 -39.16 -0.29 -2.78 16 11 C -0.03 -0.55 5.44 -104.97 -0.57 -1.12 16 12 C 0.45 10.90 7.34 -12.38 -0.09 10.81 16 13 O -0.59 -16.40 16.46 5.29 0.09 -16.31 16 14 N -0.41 -10.08 2.64 -115.92 -0.31 -10.39 16 15 C -0.31 -8.23 9.24 -15.00 -0.14 -8.37 16 16 H 0.11 3.12 7.42 -52.49 -0.39 2.73 16 17 C 0.05 1.13 5.04 -17.45 -0.09 1.04 16 18 N -0.83 -19.38 8.42 55.50 0.47 -18.91 16 19 Si 0.91 19.13 29.67 -169.99 -5.04 14.08 16 20 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 21 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 22 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 23 C 0.08 1.78 4.88 -4.04 -0.02 1.76 16 24 C -0.16 -3.05 8.37 37.16 0.31 -2.74 16 25 C -0.11 -1.89 9.62 -39.17 -0.38 -2.27 16 26 C -0.03 -0.38 9.50 -39.64 -0.38 -0.76 16 27 H 0.10 0.52 8.06 -52.49 -0.42 0.10 16 28 H 0.10 0.66 7.84 -52.49 -0.41 0.25 16 29 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 30 H 0.07 0.58 7.79 -51.93 -0.40 0.18 16 31 H 0.09 0.72 7.76 -51.93 -0.40 0.32 16 32 H 0.42 2.89 8.64 -34.46 -0.30 2.60 16 33 H 0.14 1.65 7.60 -52.49 -0.40 1.25 16 34 H 0.16 2.64 3.32 -52.49 -0.17 2.47 16 35 H 0.28 6.05 8.31 -40.82 -0.34 5.71 16 36 H 0.10 2.30 5.84 -51.93 -0.30 2.00 16 37 H 0.06 1.16 4.30 -51.93 -0.22 0.94 16 38 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.03 0.67 7.41 -51.93 -0.38 0.29 16 40 H 0.10 2.20 6.07 -51.93 -0.32 1.88 16 41 H 0.14 2.37 8.01 -52.48 -0.42 1.95 16 42 H 0.14 1.70 7.60 -52.49 -0.40 1.30 16 LS Contribution 359.33 15.07 5.42 5.42 Total: -1.00 -32.11 359.33 -9.16 -41.26 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -4.93 Total: 8.48 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: -2.22 Total: -16.21 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.09 Total: -39.29 kcal Atomic # 8 Polarization: -44.41 SS G_CDS: -1.86 Total: -46.27 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.04 Total: 14.08 kcal Atomic # 16 Polarization: 33.14 SS G_CDS: -0.62 Total: 32.53 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.11 -9.16 -41.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067687815.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.589 kcal (2) G-P(sol) polarization free energy of solvation -32.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds