Wall clock time and date at job start Tue Mar 31 2020 21:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42897 * 109.47451 * 2 1 4 4 C 1.35897 * 117.00363 * 179.97438 * 3 2 1 5 5 C 1.38727 * 120.06103 * 179.97438 * 4 3 2 6 6 C 1.38140 * 119.94797 * 180.02562 * 5 4 3 7 7 C 1.38259 * 120.05599 * 0.02562 * 6 5 4 8 8 S 1.76207 * 119.94618 * 179.97438 * 7 6 5 9 9 O 1.42095 * 106.39918 * 336.45964 * 8 7 6 10 10 O 1.42098 * 106.40181 * 203.54172 * 8 7 6 11 11 N 1.65597 * 107.21624 * 90.00023 * 8 7 6 12 12 C 1.46499 * 119.99926 * 269.72430 * 11 8 7 13 13 C 1.50704 * 109.46882 * 265.27515 * 12 11 8 14 14 H 1.07992 * 120.00253 * 0.02562 * 13 12 11 15 15 C 1.37883 * 119.99387 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00317 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99593 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47390 * 89.99794 * 17 15 13 19 19 H 1.48503 * 109.47067 * 210.00006 * 17 15 13 20 20 H 1.48504 * 109.47093 * 329.99809 * 17 15 13 21 21 C 1.46506 * 120.00079 * 90.00391 * 11 8 7 22 22 C 1.52995 * 109.46824 * 264.72374 * 21 11 8 23 23 C 1.47206 * 109.46975 * 180.02562 * 22 21 11 24 24 N 8.12383 * 145.05581 * 112.41077 * 2 1 3 25 25 C 1.38264 * 120.11190 * 0.24982 * 7 6 5 26 26 C 1.38144 * 120.05444 * 359.45417 * 25 7 6 27 27 H 1.08999 * 109.47250 * 300.00397 * 1 2 3 28 28 H 1.09004 * 109.46693 * 59.99931 * 1 2 3 29 29 H 1.08995 * 109.47479 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47250 * 239.99603 * 2 1 3 31 31 H 1.09004 * 109.47218 * 120.00091 * 2 1 3 32 32 H 1.08004 * 120.02755 * 0.02562 * 5 4 3 33 33 H 1.08006 * 119.97130 * 180.02562 * 6 5 4 34 34 H 1.08991 * 109.47463 * 25.27752 * 12 11 8 35 35 H 1.09000 * 109.46878 * 145.27981 * 12 11 8 36 36 H 0.97005 * 120.00079 * 179.97438 * 16 15 13 37 37 H 1.08999 * 109.46864 * 24.71745 * 21 11 8 38 38 H 1.08999 * 109.46950 * 144.72128 * 21 11 8 39 39 H 1.09003 * 109.47335 * 299.99547 * 22 21 11 40 40 H 1.09002 * 109.47311 * 59.99668 * 22 21 11 41 41 H 1.08010 * 119.97397 * 179.70183 * 25 7 6 42 42 H 1.07997 * 120.03160 * 180.24936 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3536 1.5253 0.0005 5 6 3.8852 2.8067 0.0000 6 6 5.2551 2.9850 0.0001 7 6 6.0962 1.8877 0.0000 8 16 7.8431 2.1184 -0.0006 9 8 8.0769 3.4098 -0.5455 10 8 8.4044 0.9319 -0.5450 11 7 8.3295 2.1830 1.5810 12 6 8.3843 3.4701 2.2785 13 6 9.7820 4.0276 2.1949 14 1 10.5522 3.4784 1.6740 15 6 10.0772 5.2390 2.7836 16 7 9.1391 5.9081 3.4175 17 14 11.8094 5.9304 2.6795 18 1 11.9338 6.7730 1.4629 19 1 12.0865 6.7549 3.8831 20 1 12.7850 4.8130 2.6096 21 6 8.7110 0.9538 2.2808 22 6 7.5088 0.4165 3.0598 23 6 7.8922 -0.8183 3.7635 24 7 8.1891 -1.7740 4.3017 25 6 5.5690 0.6095 -0.0052 26 6 4.1998 0.4258 0.0009 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.2286 3.6642 -0.0004 33 1 5.6693 3.9824 0.0001 34 1 7.6871 4.1661 1.8122 35 1 8.1116 3.3285 3.3243 36 1 9.3469 6.7602 3.8320 37 1 9.0361 0.2084 1.5550 38 1 9.5260 1.1674 2.9723 39 1 7.1835 1.1618 3.7856 40 1 6.6937 0.2029 2.3682 41 1 6.2281 -0.2461 -0.0101 42 1 3.7884 -0.5727 0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073754331.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:00 Heat of formation + Delta-G solvation = -60.351497 kcal Electronic energy + Delta-G solvation = -27150.832668 eV Core-core repulsion = 23223.651532 eV Total energy + Delta-G solvation = -3927.181135 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.37482 -37.74265 -37.21926 -36.68319 -35.72859 -35.25098 -32.78601 -32.39199 -31.14121 -30.72390 -29.85709 -26.96924 -24.46524 -23.85194 -22.98525 -22.21992 -21.87719 -18.77650 -18.44145 -17.83271 -17.02569 -16.81162 -16.46943 -16.43414 -16.17809 -15.43187 -14.88001 -14.68020 -14.48612 -14.07787 -13.79713 -13.73996 -13.64952 -13.58724 -13.21215 -12.79949 -12.72768 -12.53887 -12.35698 -12.34117 -12.07932 -11.97248 -11.70155 -11.51139 -11.42320 -11.20075 -11.10395 -11.05605 -10.96467 -10.65078 -10.60613 -10.47679 -10.06830 -9.84095 -9.19228 -8.70159 -8.47842 -8.25429 -6.10936 -4.14791 0.75215 1.03462 1.19225 2.79949 2.82030 2.87479 3.29436 3.31916 3.38227 3.41558 3.64925 4.17854 4.28872 4.42367 4.44111 4.51817 4.60580 4.65127 4.83822 4.89822 5.08602 5.10013 5.19301 5.21354 5.24926 5.37845 5.38437 5.48910 5.53365 5.63157 5.69707 5.82738 5.86454 6.05317 6.12858 6.18177 6.36265 6.54782 7.09315 7.09599 7.27263 7.44438 7.64292 7.86377 8.13070 8.87604 9.51117 10.97573 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.012100 B = 0.003655 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.462255 B = 7658.511008 C = 8632.574081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.313 6.313 4 C 0.176 3.824 5 C -0.172 4.172 6 C 0.025 3.975 7 C -0.711 4.711 8 S 2.687 3.313 9 O -0.938 6.938 10 O -0.975 6.975 11 N -0.980 5.980 12 C 0.253 3.747 13 C -0.531 4.531 14 H 0.062 0.938 15 C 0.065 3.935 16 N -0.894 5.894 17 Si 0.895 3.105 18 H -0.278 1.278 19 H -0.286 1.286 20 H -0.273 1.273 21 C 0.126 3.874 22 C -0.055 4.055 23 C 0.220 3.780 24 N -0.446 5.446 25 C 0.014 3.986 26 C -0.233 4.233 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.139 0.861 33 H 0.151 0.849 34 H 0.043 0.957 35 H 0.041 0.959 36 H 0.264 0.736 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.120 0.880 40 H 0.100 0.900 41 H 0.141 0.859 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.445 -10.281 -5.267 19.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.024 4.024 3 O -0.226 6.226 4 C 0.129 3.871 5 C -0.191 4.191 6 C 0.006 3.994 7 C -0.796 4.796 8 S 2.775 3.225 9 O -0.928 6.928 10 O -0.965 6.965 11 N -0.818 5.818 12 C 0.132 3.868 13 C -0.570 4.570 14 H 0.081 0.919 15 C -0.138 4.138 16 N -0.533 5.533 17 Si 0.723 3.277 18 H -0.204 1.204 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.002 4.002 22 C -0.098 4.098 23 C -0.099 4.099 24 N -0.124 5.124 25 C -0.005 4.005 26 C -0.253 4.253 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.157 0.843 33 H 0.169 0.831 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.108 0.892 38 H 0.119 0.881 39 H 0.138 0.862 40 H 0.118 0.882 41 H 0.159 0.841 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -14.702 -11.314 -5.082 19.235 hybrid contribution -0.002 0.561 0.160 0.583 sum -14.704 -10.753 -4.922 18.870 Atomic orbital electron populations 1.21782 0.92539 1.02966 1.03663 1.22867 0.96065 0.81719 1.01779 1.86102 1.19088 1.29755 1.87656 1.19250 0.82091 0.94441 0.91283 1.20572 0.95401 0.94955 1.08207 1.20866 0.92001 0.98636 0.87863 1.31332 1.28382 0.99399 1.20479 1.02198 0.73425 0.73515 0.73324 1.93612 1.83729 1.39349 1.76107 1.93503 1.76349 1.49577 1.77104 1.57500 1.79259 1.14028 1.30974 1.19190 0.98045 0.76492 0.93087 1.21461 0.95612 1.04918 1.35020 0.91933 1.24897 0.97481 0.96495 0.94927 1.69903 1.32759 1.15023 1.35623 0.86542 0.84399 0.79184 0.77610 1.20387 1.21231 1.19778 1.21103 0.95331 0.86411 0.97368 1.19969 1.01132 0.88826 0.99829 1.29068 0.93211 0.94270 0.93305 1.81203 1.08855 1.12072 1.10248 1.20703 0.94816 0.95615 0.89408 1.21297 0.94370 0.98172 1.11437 0.91376 0.91452 0.90261 0.91726 0.91637 0.84349 0.83105 0.93911 0.94130 0.92633 0.89162 0.88111 0.86199 0.88170 0.84147 0.84922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 10.28 37.16 0.38 -0.45 16 2 C 0.05 0.36 5.46 37.16 0.20 0.57 16 3 O -0.31 -3.31 10.14 -19.42 -0.20 -3.50 16 4 C 0.18 2.06 6.69 -39.22 -0.26 1.79 16 5 C -0.17 -2.13 9.99 -39.44 -0.39 -2.53 16 6 C 0.03 0.36 9.51 -39.61 -0.38 -0.02 16 7 C -0.71 -10.25 5.98 -39.56 -0.24 -10.49 16 8 S 2.69 47.58 5.65 -107.50 -0.61 46.97 16 9 O -0.94 -20.22 16.24 -57.17 -0.93 -21.15 16 10 O -0.98 -17.89 15.82 -57.17 -0.90 -18.79 16 11 N -0.98 -17.30 2.77 -115.66 -0.32 -17.62 16 12 C 0.25 5.53 5.10 -5.19 -0.03 5.50 16 13 C -0.53 -13.64 9.38 -34.44 -0.32 -13.96 16 14 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -24.49 13.29 55.43 0.74 -23.75 16 17 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 21 C 0.13 1.82 5.64 -4.04 -0.02 1.80 16 22 C -0.06 -0.63 6.02 -29.52 -0.18 -0.81 16 23 C 0.22 2.87 15.43 -20.75 -0.32 2.55 16 24 N -0.45 -6.92 18.54 42.17 0.78 -6.13 16 25 C 0.01 0.17 8.46 -39.61 -0.34 -0.17 16 26 C -0.23 -2.52 9.04 -39.43 -0.36 -2.88 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 31 H 0.07 0.41 7.66 -51.93 -0.40 0.01 16 32 H 0.14 1.47 8.06 -52.48 -0.42 1.05 16 33 H 0.15 2.11 7.61 -52.48 -0.40 1.71 16 34 H 0.04 0.99 7.61 -51.93 -0.40 0.59 16 35 H 0.04 0.88 8.11 -51.93 -0.42 0.46 16 36 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 37 H 0.09 1.23 6.91 -51.93 -0.36 0.87 16 38 H 0.10 1.50 8.11 -51.93 -0.42 1.08 16 39 H 0.12 1.29 8.14 -51.93 -0.42 0.86 16 40 H 0.10 0.96 7.06 -51.93 -0.37 0.59 16 41 H 0.14 1.49 7.61 -52.48 -0.40 1.09 16 42 H 0.13 1.07 6.30 -52.49 -0.33 0.73 16 LS Contribution 377.13 15.07 5.68 5.68 Total: -1.00 -32.82 377.13 -8.67 -41.49 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -5.55 Total: -1.57 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: -2.34 Total: -17.47 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: 1.20 Total: -47.50 kcal Atomic # 8 Polarization: -41.42 SS G_CDS: -2.03 Total: -43.45 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 47.58 SS G_CDS: -0.61 Total: 46.97 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.82 -8.67 -41.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073754331.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.866 kcal (2) G-P(sol) polarization free energy of solvation -32.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds