Wall clock time and date at job start Tue Mar 31 2020 21:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47033 * 2 1 4 4 C 1.53003 * 109.47231 * 119.99826 * 2 1 3 5 5 O 1.42902 * 109.46788 * 55.00447 * 4 2 1 6 6 N 1.46504 * 109.47457 * 240.00093 * 2 1 3 7 7 C 1.34775 * 119.99972 * 84.99431 * 6 2 1 8 8 O 1.21366 * 119.99862 * 0.02562 * 7 6 2 9 9 C 1.49318 * 120.00067 * 179.97438 * 7 6 2 10 10 O 1.21399 * 119.99603 * 0.02562 * 9 7 6 11 11 N 1.34771 * 120.00186 * 180.02562 * 9 7 6 12 12 C 1.39861 * 120.00201 * 185.53034 * 11 9 7 13 13 C 1.38733 * 120.10737 * 24.83076 * 12 11 9 14 14 C 1.38216 * 120.00239 * 179.97438 * 13 12 11 15 15 C 1.38324 * 120.22067 * 359.97438 * 14 13 12 16 16 C 1.38187 * 120.22159 * 359.97438 * 15 14 13 17 17 C 1.38799 * 119.99403 * 0.02915 * 16 15 14 18 18 S 1.76194 * 120.11365 * 179.97438 * 17 16 15 19 19 C 1.81409 * 102.99770 * 359.97295 * 18 17 16 20 20 C 1.50698 * 109.46810 * 179.97438 * 19 18 17 21 21 H 1.08007 * 120.00194 * 0.02562 * 20 19 18 22 22 C 1.37878 * 119.99752 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00155 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00066 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46920 * 359.97438 * 24 22 20 26 26 H 1.48491 * 109.47389 * 120.00161 * 24 22 20 27 27 H 1.48500 * 109.46916 * 240.00033 * 24 22 20 28 28 H 1.08998 * 109.46931 * 299.99795 * 1 2 3 29 29 H 1.09002 * 109.46940 * 60.00204 * 1 2 3 30 30 H 1.09004 * 109.46859 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47025 * 175.00155 * 4 2 1 32 32 H 1.08995 * 109.47177 * 295.00086 * 4 2 1 33 33 H 0.96694 * 113.99801 * 180.02562 * 5 4 2 34 34 H 0.97000 * 119.99747 * 264.99941 * 6 2 1 35 35 H 0.97006 * 120.00045 * 5.52767 * 11 9 7 36 36 H 1.08002 * 119.99942 * 359.97438 * 13 12 11 37 37 H 1.08004 * 119.88469 * 179.97438 * 14 13 12 38 38 H 1.08001 * 119.89232 * 179.71838 * 15 14 13 39 39 H 1.07996 * 120.00384 * 179.97438 * 16 15 14 40 40 H 1.08994 * 109.47047 * 299.99816 * 19 18 17 41 41 H 1.09001 * 109.46489 * 60.00198 * 19 18 17 42 42 H 0.96992 * 119.99827 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2493 5 8 1.4703 -2.0304 1.3094 6 7 2.0185 -0.6906 -1.1962 7 6 2.1471 -0.0182 -2.3572 8 8 1.8588 1.1594 -2.4115 9 6 2.6454 -0.7219 -3.5762 10 8 2.9343 -1.8998 -3.5216 11 7 2.7746 -0.0495 -4.7370 12 6 3.1299 -0.7322 -5.9049 13 6 2.8588 -2.0871 -6.0288 14 6 3.2104 -2.7594 -7.1841 15 6 3.8323 -2.0858 -8.2198 16 6 4.1057 -0.7359 -8.1066 17 6 3.7566 -0.0518 -6.9505 18 16 4.1043 1.6691 -6.8025 19 6 4.9018 2.0616 -8.3839 20 6 5.2657 3.5237 -8.4136 21 1 5.0401 4.1538 -7.5658 22 6 5.8874 4.0570 -9.5228 23 7 6.1625 3.2898 -10.5549 24 14 6.3391 5.8692 -9.5594 25 1 5.9246 6.5085 -8.2848 26 1 7.8075 6.0101 -9.7299 27 1 5.6436 6.5298 -10.6930 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1264 -0.7994 1.2056 32 1 1.7517 -0.1583 2.1370 33 1 1.7500 -2.5461 2.0780 34 1 2.2492 -1.6317 -1.1526 35 1 2.6211 0.9080 -4.7626 36 1 2.3730 -2.6165 -5.2225 37 1 2.9989 -3.8144 -7.2783 38 1 4.1088 -2.6173 -9.1184 39 1 4.5917 -0.2135 -8.9173 40 1 5.8039 1.4601 -8.4951 41 1 4.2152 1.8417 -9.2014 42 1 6.5996 3.6650 -11.3352 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264518403.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:00 Heat of formation + Delta-G solvation = -95.611995 kcal Electronic energy + Delta-G solvation = -25868.049116 eV Core-core repulsion = 21939.338971 eV Total energy + Delta-G solvation = -3928.710145 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.11200 -39.58177 -38.11723 -37.67241 -35.46010 -34.60196 -33.27927 -31.34213 -30.81894 -29.62172 -28.62529 -26.93461 -25.36332 -23.48171 -22.83304 -22.12785 -21.09144 -20.37388 -18.91957 -18.04269 -17.63652 -17.08276 -16.38949 -16.30714 -16.10322 -15.98431 -15.12475 -15.02466 -14.68623 -14.42164 -14.33704 -14.01411 -13.83597 -13.50533 -13.24250 -13.03802 -12.99363 -12.68034 -12.41444 -12.28610 -12.09206 -11.90493 -11.55578 -11.44585 -11.14171 -10.98278 -10.77370 -10.60083 -10.50934 -10.08711 -9.70272 -9.62921 -9.54048 -9.28200 -9.16805 -8.66879 -8.10972 -6.64344 -6.29622 -4.35282 0.99613 1.59494 1.77074 2.11390 2.39100 3.06121 3.20167 3.27790 3.33114 3.40838 3.59249 3.73199 4.03108 4.26167 4.28235 4.38559 4.58019 4.83897 5.03104 5.08209 5.13411 5.18501 5.27123 5.36200 5.48915 5.58424 5.68043 5.72695 5.92024 6.03264 6.10192 6.33021 6.44206 6.58534 6.78090 6.87511 6.91357 6.94318 7.07419 7.18415 7.27902 7.60644 7.63864 7.83742 7.85767 8.66126 9.29051 10.81565 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.013490 B = 0.002617 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.163273 B =10698.067895 C =12477.235292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.141 3.859 3 H 0.105 0.895 4 C 0.067 3.933 5 O -0.569 6.569 6 N -0.693 5.693 7 C 0.511 3.489 8 O -0.512 6.512 9 C 0.505 3.495 10 O -0.505 6.505 11 N -0.626 5.626 12 C 0.140 3.860 13 C -0.114 4.114 14 C -0.123 4.123 15 C -0.112 4.112 16 C -0.115 4.115 17 C -0.090 4.090 18 S -0.163 6.163 19 C 0.076 3.924 20 C -0.519 4.519 21 H 0.070 0.930 22 C 0.068 3.932 23 N -0.889 5.889 24 Si 0.908 3.092 25 H -0.269 1.269 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.383 0.617 34 H 0.417 0.583 35 H 0.426 0.574 36 H 0.143 0.857 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.137 0.863 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.769 -11.801 19.786 24.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 H 0.123 0.877 4 C -0.011 4.011 5 O -0.375 6.375 6 N -0.347 5.347 7 C 0.291 3.709 8 O -0.387 6.387 9 C 0.287 3.713 10 O -0.381 6.381 11 N -0.272 5.272 12 C 0.040 3.960 13 C -0.135 4.135 14 C -0.145 4.145 15 C -0.133 4.133 16 C -0.140 4.140 17 C -0.206 4.206 18 S 0.083 5.917 19 C -0.071 4.071 20 C -0.558 4.558 21 H 0.088 0.912 22 C -0.136 4.136 23 N -0.526 5.526 24 Si 0.735 3.265 25 H -0.193 1.193 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.231 0.769 34 H 0.254 0.746 35 H 0.265 0.735 36 H 0.161 0.839 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.155 0.845 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.189 -10.641 20.011 24.456 hybrid contribution 0.927 -0.060 -0.709 1.169 sum -8.262 -10.701 19.302 23.566 Atomic orbital electron populations 1.22085 0.94038 1.03210 1.02586 1.21217 0.95650 0.96928 0.82472 0.87738 1.22478 0.97169 0.84467 0.97035 1.86484 1.72970 1.27086 1.50963 1.45749 1.65306 1.15251 1.08426 1.19982 0.79310 0.87003 0.84589 1.90811 1.48248 1.15055 1.84556 1.20112 0.79602 0.87197 0.84386 1.90728 1.47435 1.15338 1.84592 1.43152 1.64672 1.13369 1.05964 1.17189 1.00988 0.92184 0.85653 1.21195 1.01012 0.92380 0.98957 1.20936 1.00565 0.99654 0.93298 1.21078 0.99279 0.94066 0.98831 1.21250 1.00964 0.94880 0.96881 1.21877 1.01971 0.99867 0.96841 1.85240 1.74303 0.99291 1.32819 1.21399 0.97414 1.01041 0.87200 1.20653 1.40459 0.91967 1.02765 0.91237 1.24951 0.94935 0.98891 0.94868 1.69947 1.41025 1.35942 1.05708 0.86262 0.78238 0.83578 0.78416 1.19337 1.20632 1.20617 0.91459 0.91922 0.91230 0.92568 0.91655 0.76931 0.74594 0.73459 0.83926 0.85930 0.85924 0.84499 0.93606 0.93608 0.92345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 9.29 37.16 0.35 -0.96 16 2 C 0.14 1.14 2.98 -67.93 -0.20 0.94 16 3 H 0.10 0.89 7.58 -51.93 -0.39 0.49 16 4 C 0.07 0.35 6.79 37.16 0.25 0.60 16 5 O -0.57 -3.19 12.51 -35.23 -0.44 -3.63 16 6 N -0.69 -7.00 5.05 -54.28 -0.27 -7.27 16 7 C 0.51 6.71 7.85 -11.65 -0.09 6.62 16 8 O -0.51 -7.79 16.15 5.48 0.09 -7.70 16 9 C 0.51 7.44 7.69 -11.65 -0.09 7.35 16 10 O -0.51 -7.80 13.64 5.45 0.07 -7.73 16 11 N -0.63 -10.09 5.15 -10.15 -0.05 -10.14 16 12 C 0.14 2.45 6.44 -83.50 -0.54 1.91 16 13 C -0.11 -1.80 8.72 -39.41 -0.34 -2.15 16 14 C -0.12 -1.75 10.04 -39.56 -0.40 -2.15 16 15 C -0.11 -1.70 10.04 -39.57 -0.40 -2.10 16 16 C -0.11 -2.09 9.36 -39.39 -0.37 -2.46 16 17 C -0.09 -1.73 6.13 -38.86 -0.24 -1.97 16 18 S -0.16 -3.49 20.55 -107.50 -2.21 -5.70 16 19 C 0.08 1.90 4.09 36.00 0.15 2.05 16 20 C -0.52 -14.15 9.13 -34.44 -0.31 -14.46 16 21 H 0.07 1.89 7.71 -52.48 -0.40 1.49 16 22 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 23 N -0.89 -25.05 13.29 55.43 0.74 -24.32 16 24 Si 0.91 20.89 29.54 -169.99 -5.02 15.87 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.60 7.56 -51.93 -0.39 0.20 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 33 H 0.38 0.53 9.12 45.56 0.42 0.95 16 34 H 0.42 3.97 7.85 -40.82 -0.32 3.64 16 35 H 0.43 6.93 7.12 -40.82 -0.29 6.64 16 36 H 0.14 2.16 5.78 -52.49 -0.30 1.86 16 37 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 38 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 39 H 0.14 2.63 5.88 -52.49 -0.31 2.33 16 40 H 0.05 1.19 7.75 -51.93 -0.40 0.79 16 41 H 0.05 1.18 7.75 -51.92 -0.40 0.78 16 42 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 372.28 15.07 5.61 5.61 Total: -1.00 -31.55 372.28 -8.30 -39.84 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -4.47 Total: 10.17 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -2.33 Total: -5.00 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: 0.41 Total: -41.73 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -0.28 Total: -19.06 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -2.21 Total: -5.70 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.55 -8.30 -39.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264518403.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.768 kcal (2) G-P(sol) polarization free energy of solvation -31.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds