Wall clock time and date at job start Tue Mar 31 2020 21:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47033 * 2 1 4 4 C 1.53003 * 109.47231 * 119.99826 * 2 1 3 5 5 O 1.42902 * 109.46788 * 55.00447 * 4 2 1 6 6 N 1.46504 * 109.47457 * 240.00093 * 2 1 3 7 7 C 1.34775 * 119.99972 * 84.99431 * 6 2 1 8 8 O 1.21366 * 119.99862 * 0.02562 * 7 6 2 9 9 C 1.49318 * 120.00067 * 179.97438 * 7 6 2 10 10 O 1.21399 * 119.99603 * 0.02562 * 9 7 6 11 11 N 1.34771 * 120.00186 * 180.02562 * 9 7 6 12 12 C 1.39861 * 120.00201 * 185.53034 * 11 9 7 13 13 C 1.38733 * 120.10737 * 24.83076 * 12 11 9 14 14 C 1.38216 * 120.00239 * 179.97438 * 13 12 11 15 15 C 1.38324 * 120.22067 * 359.97438 * 14 13 12 16 16 C 1.38187 * 120.22159 * 359.97438 * 15 14 13 17 17 C 1.38799 * 119.99403 * 0.02915 * 16 15 14 18 18 S 1.76194 * 120.11365 * 179.97438 * 17 16 15 19 19 C 1.81409 * 102.99770 * 359.97295 * 18 17 16 20 20 C 1.50698 * 109.46810 * 179.97438 * 19 18 17 21 21 H 1.08007 * 120.00194 * 0.02562 * 20 19 18 22 22 C 1.37878 * 119.99752 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00155 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00066 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46920 * 359.97438 * 24 22 20 26 26 H 1.48491 * 109.47389 * 120.00161 * 24 22 20 27 27 H 1.48500 * 109.46916 * 240.00033 * 24 22 20 28 28 H 1.08998 * 109.46931 * 299.99795 * 1 2 3 29 29 H 1.09002 * 109.46940 * 60.00204 * 1 2 3 30 30 H 1.09004 * 109.46859 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47025 * 175.00155 * 4 2 1 32 32 H 1.08995 * 109.47177 * 295.00086 * 4 2 1 33 33 H 0.96694 * 113.99801 * 180.02562 * 5 4 2 34 34 H 0.97000 * 119.99747 * 264.99941 * 6 2 1 35 35 H 0.97006 * 120.00045 * 5.52767 * 11 9 7 36 36 H 1.08002 * 119.99942 * 359.97438 * 13 12 11 37 37 H 1.08004 * 119.88469 * 179.97438 * 14 13 12 38 38 H 1.08001 * 119.89232 * 179.71838 * 15 14 13 39 39 H 1.07996 * 120.00384 * 179.97438 * 16 15 14 40 40 H 1.08994 * 109.47047 * 299.99816 * 19 18 17 41 41 H 1.09001 * 109.46489 * 60.00198 * 19 18 17 42 42 H 0.96992 * 119.99827 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2493 5 8 1.4703 -2.0304 1.3094 6 7 2.0185 -0.6906 -1.1962 7 6 2.1471 -0.0182 -2.3572 8 8 1.8588 1.1594 -2.4115 9 6 2.6454 -0.7219 -3.5762 10 8 2.9343 -1.8998 -3.5216 11 7 2.7746 -0.0495 -4.7370 12 6 3.1299 -0.7322 -5.9049 13 6 2.8588 -2.0871 -6.0288 14 6 3.2104 -2.7594 -7.1841 15 6 3.8323 -2.0858 -8.2198 16 6 4.1057 -0.7359 -8.1066 17 6 3.7566 -0.0518 -6.9505 18 16 4.1043 1.6691 -6.8025 19 6 4.9018 2.0616 -8.3839 20 6 5.2657 3.5237 -8.4136 21 1 5.0401 4.1538 -7.5658 22 6 5.8874 4.0570 -9.5228 23 7 6.1625 3.2898 -10.5549 24 14 6.3391 5.8692 -9.5594 25 1 5.9246 6.5085 -8.2848 26 1 7.8075 6.0101 -9.7299 27 1 5.6436 6.5298 -10.6930 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1264 -0.7994 1.2056 32 1 1.7517 -0.1583 2.1370 33 1 1.7500 -2.5461 2.0780 34 1 2.2492 -1.6317 -1.1526 35 1 2.6211 0.9080 -4.7626 36 1 2.3730 -2.6165 -5.2225 37 1 2.9989 -3.8144 -7.2783 38 1 4.1088 -2.6173 -9.1184 39 1 4.5917 -0.2135 -8.9173 40 1 5.8039 1.4601 -8.4951 41 1 4.2152 1.8417 -9.2014 42 1 6.5996 3.6650 -11.3352 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264518403.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:59 Heat of formation + Delta-G solvation = -118.965937 kcal Electronic energy + Delta-G solvation = -25869.061819 eV Core-core repulsion = 21939.338971 eV Total energy + Delta-G solvation = -3929.722848 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.26738 -40.66874 -39.27880 -38.36671 -36.42692 -35.61298 -35.33558 -32.25031 -32.07400 -30.93421 -30.60189 -27.48395 -26.45134 -25.40683 -24.16694 -23.34015 -21.92863 -21.46647 -20.08032 -19.09408 -18.61197 -18.33600 -18.11773 -17.44626 -17.17425 -16.95381 -16.82209 -16.03081 -15.90143 -15.60977 -15.38010 -15.01061 -14.89430 -14.70867 -14.68569 -14.63162 -14.28874 -13.95808 -13.83282 -13.35765 -13.29939 -13.00108 -12.79813 -12.63139 -12.56130 -12.37678 -12.03990 -11.98185 -11.66043 -11.61831 -11.00634 -10.98077 -10.89646 -10.75738 -10.55793 -10.41034 -9.43165 -8.37888 -8.27881 -6.51976 -0.20517 0.25839 0.53758 0.68816 1.13013 1.39003 1.39816 1.53796 1.74522 1.93914 2.33799 2.42163 2.72644 2.97433 3.18412 3.35702 3.81275 3.82357 4.05778 4.10455 4.28224 4.37640 4.39277 4.41140 4.55934 4.59618 4.76636 4.78601 4.84050 4.86798 4.90230 5.01914 5.16835 5.19272 5.32300 5.34546 5.49618 5.52672 5.76899 5.80502 5.94985 6.14751 6.49441 6.54832 6.74905 6.92523 7.16816 8.74307 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.013490 B = 0.002617 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.163273 B =10698.067895 C =12477.235292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.131 3.869 3 H 0.101 0.899 4 C 0.074 3.926 5 O -0.586 6.586 6 N -0.676 5.676 7 C 0.514 3.486 8 O -0.538 6.538 9 C 0.508 3.492 10 O -0.511 6.511 11 N -0.633 5.633 12 C 0.137 3.863 13 C -0.119 4.119 14 C -0.102 4.102 15 C -0.108 4.108 16 C -0.130 4.130 17 C -0.116 4.116 18 S -0.166 6.166 19 C 0.085 3.915 20 C -0.542 4.542 21 H 0.065 0.935 22 C 0.019 3.981 23 N -0.920 5.920 24 Si 0.977 3.023 25 H -0.265 1.265 26 H -0.272 1.272 27 H -0.272 1.272 28 H 0.087 0.913 29 H 0.040 0.960 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.402 0.598 34 H 0.422 0.578 35 H 0.423 0.577 36 H 0.154 0.846 37 H 0.166 0.834 38 H 0.154 0.846 39 H 0.116 0.884 40 H 0.024 0.976 41 H 0.025 0.975 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.218 -13.174 21.475 26.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.028 3.972 3 H 0.118 0.882 4 C -0.004 4.004 5 O -0.396 6.396 6 N -0.329 5.329 7 C 0.293 3.707 8 O -0.415 6.415 9 C 0.290 3.710 10 O -0.386 6.386 11 N -0.278 5.278 12 C 0.037 3.963 13 C -0.140 4.140 14 C -0.123 4.123 15 C -0.128 4.128 16 C -0.155 4.155 17 C -0.231 4.231 18 S 0.079 5.921 19 C -0.062 4.062 20 C -0.581 4.581 21 H 0.083 0.917 22 C -0.183 4.183 23 N -0.558 5.558 24 Si 0.800 3.200 25 H -0.189 1.189 26 H -0.197 1.197 27 H -0.197 1.197 28 H 0.106 0.894 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.108 0.892 33 H 0.253 0.747 34 H 0.259 0.741 35 H 0.262 0.738 36 H 0.171 0.829 37 H 0.183 0.817 38 H 0.171 0.829 39 H 0.134 0.866 40 H 0.042 0.958 41 H 0.043 0.957 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.646 -12.078 21.750 26.683 hybrid contribution 0.995 0.146 -1.146 1.525 sum -8.651 -11.932 20.604 25.333 Atomic orbital electron populations 1.22033 0.93930 1.02855 1.02541 1.21510 0.95761 0.97196 0.82727 0.88153 1.22416 0.97327 0.84582 0.96083 1.86431 1.73321 1.27361 1.52458 1.45810 1.63686 1.15359 1.08054 1.19726 0.79464 0.86653 0.84821 1.90805 1.49839 1.15992 1.84847 1.20408 0.78979 0.87131 0.84456 1.90706 1.47625 1.15546 1.84743 1.43222 1.65012 1.13297 1.06246 1.17376 1.00501 0.92927 0.85529 1.21458 1.00993 0.91556 0.99989 1.21419 0.97785 1.01430 0.91664 1.21400 0.98450 0.92641 1.00347 1.21252 1.01608 0.96460 0.96148 1.21819 1.04634 0.98211 0.98459 1.84936 1.74697 1.02350 1.30096 1.21007 0.96306 0.99949 0.88961 1.20968 1.41054 0.93070 1.03021 0.91691 1.25878 0.94522 1.03551 0.94323 1.70046 1.41480 1.37966 1.06308 0.85215 0.78228 0.77900 0.78640 1.18904 1.19746 1.19714 0.89395 0.94100 0.91629 0.91923 0.89211 0.74738 0.74055 0.73848 0.82891 0.81680 0.82860 0.86635 0.95791 0.95653 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 9.29 71.98 0.67 -1.66 16 2 C 0.13 1.94 2.98 44.99 0.13 2.07 16 3 H 0.10 1.61 7.58 -2.39 -0.02 1.59 16 4 C 0.07 0.59 6.79 71.98 0.49 1.08 16 5 O -0.59 -5.11 12.51 -148.98 -1.86 -6.97 16 6 N -0.68 -12.95 5.05 -443.98 -2.24 -15.19 16 7 C 0.51 13.37 7.85 87.23 0.68 14.05 16 8 O -0.54 -16.56 16.15 -3.30 -0.05 -16.61 16 9 C 0.51 14.75 7.69 87.23 0.67 15.42 16 10 O -0.51 -15.10 13.64 -3.40 -0.05 -15.15 16 11 N -0.63 -20.58 5.15 -304.38 -1.57 -22.15 16 12 C 0.14 4.76 6.44 38.31 0.25 5.01 16 13 C -0.12 -3.52 8.72 22.38 0.20 -3.32 16 14 C -0.10 -2.58 10.04 22.28 0.22 -2.36 16 15 C -0.11 -3.08 10.04 22.28 0.22 -2.86 16 16 C -0.13 -4.83 9.36 22.39 0.21 -4.62 16 17 C -0.12 -4.57 6.13 22.73 0.14 -4.43 16 18 S -0.17 -7.44 20.55 -56.49 -1.16 -8.60 16 19 C 0.09 4.51 4.09 71.24 0.29 4.80 16 20 C -0.54 -30.66 9.13 25.60 0.23 -30.43 16 21 H 0.06 3.65 7.71 -2.91 -0.02 3.62 16 22 C 0.02 1.05 5.46 84.65 0.46 1.52 16 23 N -0.92 -53.20 13.29 21.45 0.28 -52.91 16 24 Si 0.98 43.26 29.54 68.60 2.03 45.29 16 25 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 26 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 27 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 28 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 1.04 7.56 -2.39 -0.02 1.02 16 31 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.09 0.32 8.14 -2.39 -0.02 0.31 16 33 H 0.40 0.03 9.12 -74.06 -0.68 -0.64 16 34 H 0.42 7.39 7.85 -92.71 -0.73 6.66 16 35 H 0.42 14.22 7.12 -92.70 -0.66 13.56 16 36 H 0.15 4.26 5.78 -2.91 -0.02 4.24 16 37 H 0.17 2.84 8.06 -2.91 -0.02 2.81 16 38 H 0.15 3.40 8.06 -2.91 -0.02 3.37 16 39 H 0.12 4.74 5.88 -2.91 -0.02 4.72 16 40 H 0.02 1.33 7.75 -2.39 -0.02 1.31 16 41 H 0.03 1.40 7.75 -2.39 -0.02 1.38 16 42 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -69.97 372.28 -0.72 -70.69 By element: Atomic # 1 Polarization: 28.31 SS G_CDS: -0.97 Total: 27.34 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: 4.87 Total: -5.73 kcal Atomic # 7 Polarization: -86.73 SS G_CDS: -3.53 Total: -90.25 kcal Atomic # 8 Polarization: -36.77 SS G_CDS: -1.96 Total: -38.73 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: -7.44 SS G_CDS: -1.16 Total: -8.60 kcal Total: -69.97 -0.72 -70.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264518403.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.276 kcal (2) G-P(sol) polarization free energy of solvation -69.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds