Wall clock time and date at job start Tue Mar 31 2020 21:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47207 * 2 1 4 4 C 1.50704 * 109.47272 * 120.00244 * 2 1 3 5 5 H 1.07998 * 120.00303 * 122.26788 * 4 2 1 6 6 C 1.37882 * 119.99386 * 302.27597 * 4 2 1 7 7 N 1.31514 * 119.99995 * 155.90210 * 6 4 2 8 8 Si 1.86799 * 120.00160 * 335.89185 * 6 4 2 9 9 H 1.48492 * 109.47309 * 270.00509 * 8 6 4 10 10 H 1.48500 * 109.46913 * 150.00192 * 8 6 4 11 11 H 1.48500 * 109.46935 * 30.00474 * 8 6 4 12 12 N 1.46502 * 109.47078 * 239.99841 * 2 1 3 13 13 C 1.46502 * 120.00124 * 300.00270 * 12 2 1 14 14 S 1.65599 * 119.99875 * 120.00207 * 12 2 1 15 15 O 1.42104 * 106.40247 * 209.37406 * 14 12 2 16 16 O 1.42095 * 106.40234 * 342.29578 * 14 12 2 17 17 N 1.65601 * 107.21866 * 95.83822 * 14 12 2 18 18 C 1.46379 * 119.64418 * 270.22207 * 17 14 12 19 19 C 1.53755 * 109.20795 * 114.91059 * 18 17 14 20 20 S 1.81741 * 108.75276 * 57.83003 * 19 18 17 21 21 O 1.42101 * 109.46857 * 189.30802 * 20 19 18 22 22 C 1.81742 * 102.30700 * 305.34690 * 20 19 18 23 23 C 1.46372 * 119.65032 * 90.49314 * 17 14 12 24 24 C 1.52993 * 109.46837 * 5.09178 * 23 17 14 25 25 C 1.52998 * 109.47004 * 125.08677 * 23 17 14 26 26 H 1.09000 * 109.47129 * 174.79511 * 1 2 3 27 27 H 1.09001 * 109.46969 * 294.79865 * 1 2 3 28 28 H 1.09002 * 109.46609 * 54.79605 * 1 2 3 29 29 H 0.97010 * 119.99662 * 354.97052 * 7 6 4 30 30 H 1.08998 * 109.47431 * 95.69384 * 13 12 2 31 31 H 1.09001 * 109.47056 * 215.69513 * 13 12 2 32 32 H 1.09004 * 109.46777 * 335.69360 * 13 12 2 33 33 H 1.08997 * 109.47067 * 234.91570 * 18 17 14 34 34 H 1.09001 * 109.46973 * 354.90602 * 18 17 14 35 35 H 1.09000 * 109.69966 * 297.99675 * 19 18 17 36 36 H 1.09006 * 109.62625 * 177.62435 * 19 18 17 37 37 H 1.08996 * 109.57960 * 294.74545 * 22 20 19 38 38 H 1.08995 * 109.57889 * 174.33429 * 22 20 19 39 39 H 1.08997 * 109.47285 * 68.87986 * 24 23 17 40 40 H 1.09002 * 109.47625 * 188.87715 * 24 23 17 41 41 H 1.09000 * 109.47605 * 308.87711 * 24 23 17 42 42 H 1.09001 * 109.47321 * 60.00309 * 25 23 17 43 43 H 1.09004 * 109.47461 * 179.97438 * 25 23 17 44 44 H 1.08993 * 109.47052 * 299.99920 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6832 -1.5667 1.1318 6 6 1.6610 -0.2674 2.4822 7 7 1.6750 -1.0954 3.5038 8 14 1.1381 1.5092 2.7270 9 1 2.3272 2.3337 3.0605 10 1 0.1546 1.5872 3.8368 11 1 0.5168 2.0189 1.4782 12 7 2.0184 -0.6907 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 16 2.9704 0.1141 -2.2862 15 8 2.7181 -0.4778 -3.5532 16 8 2.7939 1.5000 -2.0268 17 7 4.5456 -0.2347 -1.9126 18 6 5.2714 0.6167 -0.9686 19 6 5.6143 -0.1998 0.2884 20 16 6.5965 -1.6472 -0.2050 21 8 6.7393 -2.5232 0.9047 22 6 5.5360 -2.4257 -1.4589 23 6 5.1991 -1.3874 -2.5344 24 6 4.2587 -2.0105 -3.5679 25 6 6.4864 -0.9327 -3.2250 26 1 -0.3633 -1.0234 -0.0932 27 1 -0.3633 0.4310 0.9329 28 1 -0.3632 0.5925 -0.8398 29 1 1.8758 -2.0342 3.3645 30 1 0.7952 -2.1451 -2.0836 31 1 2.5039 -2.6072 -1.8963 32 1 1.4309 -2.5710 -0.4765 33 1 6.1897 0.9746 -1.4340 34 1 4.6481 1.4675 -0.6933 35 1 4.6960 -0.5297 0.7740 36 1 6.1918 0.4156 0.9784 37 1 4.6169 -2.7791 -0.9916 38 1 6.0631 -3.2646 -1.9133 39 1 4.1446 -1.3304 -4.4120 40 1 4.6764 -2.9551 -3.9164 41 1 3.2852 -2.1901 -3.1118 42 1 7.1564 -0.4887 -2.4887 43 1 6.9734 -1.7911 -3.6877 44 1 6.2469 -0.1944 -3.9902 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337745721.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:36 Heat of formation + Delta-G solvation = -72.294431 kcal Electronic energy + Delta-G solvation = -28948.651536 eV Core-core repulsion = 25156.396468 eV Total energy + Delta-G solvation = -3792.255069 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.117 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -38.81649 -37.13785 -36.44817 -35.49901 -35.41002 -33.22268 -32.68611 -29.94829 -29.38019 -27.56754 -27.35474 -25.75142 -24.70129 -23.14171 -20.95817 -20.42761 -18.48404 -17.65000 -17.36488 -17.32101 -16.62157 -16.13757 -15.19489 -15.02875 -14.84679 -14.67472 -14.50058 -14.04193 -13.72116 -13.46659 -13.29906 -13.20758 -12.97559 -12.59418 -12.36361 -12.20433 -12.08086 -12.01571 -11.91975 -11.82728 -11.67272 -11.58872 -11.52025 -11.34166 -11.20171 -11.06046 -10.63084 -10.31608 -10.14334 -9.95187 -9.71440 -9.67634 -9.33048 -9.09685 -8.45535 -8.11894 -8.10090 -6.59259 -4.21699 0.99966 1.75734 2.66179 3.16020 3.33697 3.39088 3.51879 3.81398 3.96115 4.38846 4.54499 4.61303 4.71618 4.93972 5.05766 5.09333 5.20870 5.32135 5.36394 5.44910 5.52083 5.59424 5.75028 5.77948 5.82649 5.84627 5.99218 6.02462 6.16128 6.22955 6.33133 6.40336 6.40650 6.49595 6.61044 6.64276 6.73505 6.94893 7.28823 7.41107 7.90955 8.23337 8.76205 9.44466 10.75219 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.012540 B = 0.006970 C = 0.005462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.307453 B = 4016.231357 C = 5124.740772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.246 3.754 3 H 0.050 0.950 4 C -0.622 4.622 5 H 0.062 0.938 6 C 0.044 3.956 7 N -0.887 5.887 8 Si 1.026 2.974 9 H -0.283 1.283 10 H -0.284 1.284 11 H -0.268 1.268 12 N -0.985 5.985 13 C 0.098 3.902 14 S 2.772 3.228 15 O -0.984 6.984 16 O -0.982 6.982 17 N -1.003 6.003 18 C 0.146 3.854 19 C -0.463 4.463 20 S 1.229 4.771 21 O -0.858 6.858 22 C -0.449 4.449 23 C 0.202 3.798 24 C -0.173 4.173 25 C -0.160 4.160 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.026 0.974 29 H 0.271 0.729 30 H 0.045 0.955 31 H 0.055 0.945 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.096 0.904 38 H 0.118 0.882 39 H 0.097 0.903 40 H 0.058 0.942 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.329 1.201 -14.356 17.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.141 3.859 3 H 0.068 0.932 4 C -0.660 4.660 5 H 0.080 0.920 6 C -0.164 4.164 7 N -0.519 5.519 8 Si 0.853 3.147 9 H -0.210 1.210 10 H -0.209 1.209 11 H -0.193 1.193 12 N -0.826 5.826 13 C -0.048 4.048 14 S 2.784 3.216 15 O -0.968 6.968 16 O -0.966 6.966 17 N -0.841 5.841 18 C 0.019 3.981 19 C -0.603 4.603 20 S 1.428 4.572 21 O -0.854 6.854 22 C -0.588 4.588 23 C 0.113 3.887 24 C -0.232 4.232 25 C -0.219 4.219 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.046 0.954 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.122 0.878 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.114 0.886 38 H 0.137 0.863 39 H 0.116 0.884 40 H 0.077 0.923 41 H 0.099 0.901 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.466 2.544 -13.524 17.289 hybrid contribution -1.513 -2.176 0.351 2.674 sum 8.954 0.367 -13.172 15.932 Atomic orbital electron populations 1.22397 0.98488 1.00434 0.99656 1.19010 0.91200 0.92968 0.82696 0.93222 1.22052 1.35233 1.18024 0.90734 0.92039 1.25621 0.93768 1.04746 0.92262 1.70815 1.41615 1.05448 1.34030 0.84371 0.77610 0.76240 0.76468 1.20983 1.20948 1.19342 1.57551 1.64445 1.21315 1.39271 1.21434 0.99093 0.81979 1.02321 1.02279 0.72515 0.73092 0.73719 1.93734 1.84958 1.77524 1.40552 1.93540 1.85191 1.31740 1.86115 1.58261 1.31007 1.38134 1.56706 1.20996 0.98519 0.92289 0.86255 1.28108 1.13825 1.13465 1.04888 1.70065 1.03064 0.90593 0.93456 1.93119 1.78509 1.62970 1.50762 1.28046 1.13001 1.06995 1.10720 1.19821 0.94668 0.83453 0.90765 1.23071 0.98675 1.01390 1.00026 1.22246 0.96100 1.02518 1.01048 0.93186 0.92436 0.95448 0.91884 0.93611 0.92686 0.89874 0.89581 0.87784 0.86007 0.86194 0.88556 0.86326 0.88432 0.92323 0.90141 0.91321 0.90733 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 8.59 37.16 0.32 -2.94 16 2 C 0.25 5.60 2.20 -69.08 -0.15 5.45 16 3 H 0.05 1.18 5.66 -51.93 -0.29 0.89 16 4 C -0.62 -15.99 7.46 -34.44 -0.26 -16.25 16 5 H 0.06 1.71 7.49 -52.49 -0.39 1.32 16 6 C 0.04 1.21 5.17 -17.82 -0.09 1.12 16 7 N -0.89 -26.17 13.70 55.43 0.76 -25.41 16 8 Si 1.03 24.22 26.21 -169.99 -4.46 19.77 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.27 -5.91 5.74 56.52 0.32 -5.58 16 12 N -0.98 -19.30 3.12 -115.85 -0.36 -19.67 16 13 C 0.10 1.71 8.93 59.85 0.53 2.24 16 14 S 2.77 49.43 5.76 -107.50 -0.62 48.82 16 15 O -0.98 -17.34 11.94 -57.17 -0.68 -18.02 16 16 O -0.98 -20.11 15.04 -57.17 -0.86 -20.97 16 17 N -1.00 -14.23 2.93 -100.14 -0.29 -14.52 16 18 C 0.15 1.88 5.86 -3.71 -0.02 1.86 16 19 C -0.46 -6.77 6.67 37.55 0.25 -6.52 16 20 S 1.23 15.81 12.33 -107.50 -1.33 14.48 16 21 O -0.86 -17.34 18.14 -35.23 -0.64 -17.98 16 22 C -0.45 -5.52 5.40 37.28 0.20 -5.32 16 23 C 0.20 2.33 1.03 -131.77 -0.14 2.20 16 24 C -0.17 -2.14 6.75 37.15 0.25 -1.89 16 25 C -0.16 -1.22 8.04 37.16 0.30 -0.92 16 26 H 0.05 1.04 7.50 -51.93 -0.39 0.65 16 27 H 0.06 1.27 4.84 -51.93 -0.25 1.02 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.27 8.06 8.73 -40.82 -0.36 7.70 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.84 4.90 -51.93 -0.25 0.59 16 32 H 0.08 1.59 7.15 -51.93 -0.37 1.22 16 33 H 0.09 0.71 6.91 -51.93 -0.36 0.35 16 34 H 0.10 1.52 6.81 -51.93 -0.35 1.16 16 35 H 0.12 2.40 7.08 -51.93 -0.37 2.03 16 36 H 0.12 1.52 8.14 -51.92 -0.42 1.09 16 37 H 0.10 1.46 7.78 -51.93 -0.40 1.06 16 38 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.10 1.28 6.50 -51.93 -0.34 0.94 16 40 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 41 H 0.08 1.15 2.68 -51.93 -0.14 1.01 16 42 H 0.07 0.37 5.84 -51.93 -0.30 0.06 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 342.06 15.07 5.15 5.15 Total: -1.00 -36.29 342.06 -8.53 -44.82 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -6.40 Total: 4.48 kcal Atomic # 6 Polarization: -22.16 SS G_CDS: 1.20 Total: -20.97 kcal Atomic # 7 Polarization: -59.70 SS G_CDS: 0.10 Total: -59.60 kcal Atomic # 8 Polarization: -54.79 SS G_CDS: -2.18 Total: -56.97 kcal Atomic # 14 Polarization: 24.22 SS G_CDS: -4.46 Total: 19.77 kcal Atomic # 16 Polarization: 65.24 SS G_CDS: -1.94 Total: 63.30 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -36.29 -8.53 -44.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337745721.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.470 kcal (2) G-P(sol) polarization free energy of solvation -36.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds