Wall clock time and date at job start Tue Mar 31 2020 21:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 110.63882 * 2 1 4 4 C 1.54320 * 110.72074 * 236.66807 * 2 1 3 5 5 N 1.47027 * 107.27212 * 219.44155 * 4 2 1 6 6 C 1.34771 * 125.65050 * 178.90674 * 5 4 2 7 7 O 1.21280 * 119.99824 * 359.97438 * 6 5 4 8 8 C 1.50694 * 120.00196 * 179.97438 * 6 5 4 9 9 S 1.80998 * 109.47573 * 179.97438 * 8 6 5 10 10 C 1.76195 * 100.00336 * 179.97438 * 9 8 6 11 11 H 1.08001 * 120.00063 * 0.02562 * 10 9 8 12 12 C 1.38804 * 120.00177 * 180.02562 * 10 9 8 13 13 N 1.31637 * 119.99716 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00235 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47362 * 89.99469 * 14 12 10 16 16 H 1.48503 * 109.47045 * 209.99647 * 14 12 10 17 17 H 1.48507 * 109.47038 * 329.99652 * 14 12 10 18 18 C 1.47530 * 108.71396 * 358.93745 * 5 4 2 19 19 C 1.54912 * 104.78087 * 24.12459 * 18 5 4 20 20 H 1.09000 * 111.00303 * 204.90541 * 19 18 5 21 21 N 1.46499 * 111.00682 * 81.08527 * 19 18 5 22 22 C 1.34777 * 119.99665 * 89.85966 * 21 19 18 23 23 O 1.21613 * 120.00251 * 359.72091 * 22 21 19 24 24 C 1.47380 * 119.99615 * 179.72401 * 22 21 19 25 25 C 1.47025 * 127.19272 * 179.97438 * 24 22 21 26 26 C 1.34167 * 105.95478 * 180.02562 * 25 24 22 27 27 O 1.34215 * 109.12756 * 359.97438 * 26 25 24 28 28 C 1.33659 * 110.90432 * 359.72630 * 27 26 25 29 29 H 1.09006 * 109.46879 * 296.85411 * 1 2 3 30 30 H 1.08995 * 109.47009 * 56.85571 * 1 2 3 31 31 H 1.08999 * 109.46996 * 176.86410 * 1 2 3 32 32 H 1.08998 * 109.88042 * 338.85670 * 4 2 1 33 33 H 1.09001 * 109.88601 * 100.02400 * 4 2 1 34 34 H 1.09005 * 109.47245 * 300.00019 * 8 6 5 35 35 H 1.08999 * 109.47187 * 59.99587 * 8 6 5 36 36 H 0.97001 * 119.99612 * 180.02562 * 13 12 10 37 37 H 1.08997 * 110.37586 * 265.30673 * 18 5 4 38 38 H 1.09001 * 110.40722 * 142.95042 * 18 5 4 39 39 H 0.97001 * 119.99790 * 269.57679 * 21 19 18 40 40 H 1.08006 * 127.01556 * 359.97438 * 25 24 22 41 41 H 1.08008 * 125.44000 * 180.02562 * 26 25 24 42 42 H 1.07998 * 125.79979 * 180.28875 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0760 -0.7931 -1.2059 5 7 3.2446 -1.5519 -0.7365 6 6 3.9916 -2.3869 -1.4855 7 8 3.7176 -2.5627 -2.6538 8 6 5.1672 -3.1022 -0.8713 9 16 5.9610 -4.1425 -2.1218 10 6 7.2624 -4.8387 -1.1595 11 1 7.3663 -4.5718 -0.1182 12 6 8.1541 -5.7303 -1.7397 13 7 8.0272 -6.0561 -3.0087 14 14 9.5334 -6.4690 -0.7192 15 1 9.0644 -7.7310 -0.0926 16 1 10.6986 -6.7541 -1.5946 17 1 9.9337 -5.5090 0.3408 18 6 3.4638 -1.2485 0.6906 19 6 2.0790 -0.7934 1.2151 20 1 2.1844 -0.1484 2.0874 21 7 1.2273 -1.9463 1.5177 22 6 1.2466 -2.4936 2.7492 23 8 1.9749 -2.0336 3.6077 24 6 0.3852 -3.6496 3.0554 25 6 0.2808 -4.3659 4.3351 26 6 -0.6220 -5.3392 4.1403 27 8 -1.0685 -5.2783 2.8761 28 6 -0.4864 -4.2746 2.2125 29 1 -0.3633 0.4642 0.9169 30 1 -0.3633 0.5619 -0.8604 31 1 -0.3633 -1.0261 -0.0562 32 1 1.3130 -1.4784 -1.5750 33 1 2.3740 -0.1057 -1.9976 34 1 5.8839 -2.3701 -0.4990 35 1 4.8227 -3.7255 -0.0462 36 1 8.6501 -6.6794 -3.4141 37 1 4.1934 -0.4463 0.8003 38 1 3.7963 -2.1402 1.2220 39 1 0.6463 -2.3131 0.8330 40 1 0.8211 -4.1526 5.2456 41 1 -0.9394 -6.0566 4.8826 42 1 -0.6721 -4.0062 1.1830 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071655421.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:30 Heat of formation + Delta-G solvation = -49.396681 kcal Electronic energy + Delta-G solvation = -26589.028161 eV Core-core repulsion = 22662.322062 eV Total energy + Delta-G solvation = -3926.706099 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.85294 -40.62388 -39.11310 -37.52899 -34.23803 -33.19963 -32.68341 -32.42143 -30.37160 -29.49299 -28.85419 -26.20996 -25.41049 -24.47396 -22.82448 -21.79479 -20.75555 -20.28814 -19.35017 -18.79633 -17.68713 -16.90912 -16.71930 -16.46522 -16.27423 -15.63766 -15.22210 -15.18829 -14.79719 -14.64461 -14.44144 -13.91147 -13.77917 -13.69556 -13.25223 -13.20261 -13.05499 -12.71014 -12.57980 -12.49486 -12.37552 -11.96349 -11.61719 -11.34343 -11.11643 -11.05272 -11.00733 -10.75078 -10.30523 -10.13880 -9.81570 -9.59566 -9.36686 -9.14607 -9.05862 -8.51672 -8.23949 -6.50224 -6.21207 -3.91870 1.01417 1.76911 2.57052 2.78807 2.87839 3.03314 3.09868 3.23392 3.26837 3.31426 3.60402 3.97524 4.21080 4.23476 4.27338 4.33463 4.47058 4.70236 4.87801 4.94770 5.02139 5.12614 5.14083 5.20789 5.30914 5.33505 5.35526 5.49522 5.53786 5.58699 5.60206 5.66216 5.73141 5.81416 5.91899 5.95119 6.14223 6.15905 6.37187 6.60348 7.16556 7.59604 7.61437 7.93062 8.36215 8.52415 9.24347 10.86254 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.009881 B = 0.003183 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2832.969645 B = 8794.586824 C =10518.172784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.111 4.111 3 H 0.102 0.898 4 C 0.110 3.890 5 N -0.625 5.625 6 C 0.549 3.451 7 O -0.515 6.515 8 C -0.147 4.147 9 S -0.060 6.060 10 C -0.535 4.535 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.868 5.868 14 Si 0.918 3.082 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 C 0.089 3.911 19 C 0.138 3.862 20 H 0.114 0.886 21 N -0.714 5.714 22 C 0.591 3.409 23 O -0.533 6.533 24 C -0.235 4.235 25 C -0.164 4.164 26 C -0.040 4.040 27 O -0.173 6.173 28 C 0.024 3.976 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.268 0.732 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.399 0.601 40 H 0.160 0.840 41 H 0.209 0.791 42 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.092 9.936 12.814 26.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.130 4.130 3 H 0.120 0.880 4 C -0.013 4.013 5 N -0.363 5.363 6 C 0.338 3.662 7 O -0.389 6.389 8 C -0.298 4.298 9 S 0.167 5.833 10 C -0.683 4.683 11 H 0.091 0.909 12 C -0.135 4.135 13 N -0.503 5.503 14 Si 0.744 3.256 15 H -0.203 1.203 16 H -0.207 1.207 17 H -0.196 1.196 18 C -0.035 4.035 19 C 0.032 3.968 20 H 0.132 0.868 21 N -0.366 5.366 22 C 0.379 3.621 23 O -0.410 6.410 24 C -0.240 4.240 25 C -0.184 4.184 26 C -0.106 4.106 27 O -0.068 6.068 28 C -0.047 4.047 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.235 0.765 40 H 0.178 0.822 41 H 0.226 0.774 42 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -21.044 9.643 11.368 25.789 hybrid contribution 1.188 -0.382 1.766 2.162 sum -19.856 9.261 13.134 25.545 Atomic orbital electron populations 1.21708 0.93334 1.02048 1.02686 1.22577 0.96963 0.99968 0.93488 0.87956 1.21967 0.88352 0.94703 0.96259 1.48523 1.30761 1.46001 1.11038 1.20023 0.82701 0.77664 0.85798 1.90709 1.69817 1.62399 1.15989 1.23511 0.97817 1.02896 1.05531 1.85347 1.33685 1.52010 1.12302 1.22865 1.15287 1.31330 0.98828 0.90939 1.24985 0.97624 0.95653 0.95241 1.70022 1.36698 1.32606 1.11005 0.86172 0.80448 0.79336 0.79595 1.20252 1.20720 1.19644 1.22783 0.96900 1.02112 0.81744 1.22114 0.89292 0.87159 0.98241 0.86844 1.45748 1.44923 1.33230 1.12740 1.17258 0.81324 0.81691 0.81852 1.90803 1.40922 1.62416 1.46831 1.21499 1.04305 1.02040 0.96159 1.22790 1.00952 0.96434 0.98201 1.23982 0.99739 1.02427 0.84405 1.83809 1.55631 1.44296 1.23042 1.24444 0.94334 0.88046 0.97873 0.91727 0.91618 0.92614 0.91469 0.91119 0.89286 0.89443 0.92193 0.90095 0.89782 0.76503 0.82223 0.77397 0.77417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.72 8.71 37.16 0.32 -0.40 16 2 C -0.11 -0.77 3.42 -88.79 -0.30 -1.07 16 3 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 4 C 0.11 1.16 6.46 -3.06 -0.02 1.14 16 5 N -0.63 -8.68 3.33 -170.44 -0.57 -9.25 16 6 C 0.55 10.57 7.87 -10.99 -0.09 10.48 16 7 O -0.52 -11.81 16.19 5.56 0.09 -11.72 16 8 C -0.15 -3.10 5.16 36.00 0.19 -2.91 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.53 -15.50 9.50 30.94 0.29 -15.20 16 11 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 12 C 0.07 2.14 5.49 -17.43 -0.10 2.05 16 13 N -0.87 -26.37 13.22 55.49 0.73 -25.64 16 14 Si 0.92 21.72 29.55 -169.99 -5.02 16.70 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 18 C 0.09 1.02 6.39 -2.47 -0.02 1.00 16 19 C 0.14 1.21 3.12 -65.78 -0.21 1.00 16 20 H 0.11 0.99 7.63 -51.93 -0.40 0.60 16 21 N -0.71 -6.32 4.61 -52.81 -0.24 -6.56 16 22 C 0.59 6.77 7.81 -12.54 -0.10 6.67 16 23 O -0.53 -7.95 16.67 5.27 0.09 -7.87 16 24 C -0.24 -2.37 6.31 -103.28 -0.65 -3.03 16 25 C -0.16 -1.54 11.01 -37.46 -0.41 -1.95 16 26 C -0.04 -0.29 12.03 29.30 0.35 0.06 16 27 O -0.17 -1.45 10.52 7.64 0.08 -1.37 16 28 C 0.02 0.18 11.61 30.07 0.35 0.53 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.26 6.42 -51.93 -0.33 -0.07 16 32 H 0.07 0.70 7.76 -51.93 -0.40 0.30 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 1.77 8.14 -51.91 -0.42 1.34 16 35 H 0.09 1.76 7.85 -51.92 -0.41 1.35 16 36 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.08 1.11 7.48 -51.93 -0.39 0.72 16 39 H 0.40 2.78 6.00 -40.82 -0.24 2.53 16 40 H 0.16 1.41 8.06 -52.48 -0.42 0.98 16 41 H 0.21 0.72 8.06 -52.48 -0.42 0.30 16 42 H 0.21 0.86 7.47 -52.49 -0.39 0.46 16 LS Contribution 372.59 15.07 5.61 5.61 Total: -1.00 -38.22 372.59 -7.32 -45.53 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -5.49 Total: 0.05 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -0.38 Total: -1.63 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: -0.08 Total: -41.45 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: 0.26 Total: -20.95 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -38.22 -7.32 -45.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071655421.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.865 kcal (2) G-P(sol) polarization free energy of solvation -38.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds