Wall clock time and date at job start Tue Mar 31 2020 20:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 110.00282 * 2 1 4 4 C 1.54340 * 109.99244 * 238.96168 * 2 1 3 5 5 C 1.55155 * 103.02083 * 218.66651 * 4 2 1 6 6 H 1.09002 * 111.03684 * 153.39688 * 5 4 2 7 7 N 1.46497 * 111.00487 * 277.23265 * 5 4 2 8 8 C 1.34774 * 120.00038 * 198.64967 * 7 5 4 9 9 O 1.21616 * 120.00148 * 0.02562 * 8 7 5 10 10 C 1.47378 * 120.00331 * 179.97438 * 8 7 5 11 11 C 1.47024 * 127.19791 * 180.02562 * 10 8 7 12 12 C 1.34179 * 105.95288 * 180.02562 * 11 10 8 13 13 O 1.34207 * 109.12638 * 359.97438 * 12 11 10 14 14 C 1.33649 * 110.91218 * 359.72770 * 13 12 11 15 15 C 1.54910 * 101.58418 * 35.30690 * 5 4 2 16 16 N 1.47021 * 109.88365 * 121.09445 * 2 1 3 17 17 C 1.34777 * 125.64871 * 298.39925 * 16 2 1 18 18 O 1.21274 * 120.00135 * 359.97438 * 17 16 2 19 19 C 1.50706 * 119.99766 * 179.71262 * 17 16 2 20 20 S 1.81003 * 109.46851 * 179.97438 * 19 17 16 21 21 C 1.76196 * 99.99843 * 180.02562 * 20 19 17 22 22 H 1.07998 * 120.00031 * 359.97438 * 21 20 19 23 23 C 1.38802 * 119.99637 * 180.02562 * 21 20 19 24 24 N 1.31628 * 120.00514 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99567 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47216 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.46911 * 120.00106 * 25 23 21 28 28 H 1.48506 * 109.47215 * 239.99864 * 25 23 21 29 29 H 1.08998 * 109.47588 * 300.35998 * 1 2 3 30 30 H 1.09002 * 109.47479 * 60.35656 * 1 2 3 31 31 H 1.09000 * 109.47524 * 180.35567 * 1 2 3 32 32 H 1.08999 * 110.84721 * 100.20001 * 4 2 1 33 33 H 1.08999 * 110.66763 * 337.05230 * 4 2 1 34 34 H 0.97001 * 120.00450 * 18.65096 * 7 5 4 35 35 H 1.07997 * 127.01678 * 359.97438 * 11 10 8 36 36 H 1.08000 * 125.43194 * 179.97438 * 12 11 10 37 37 H 1.07999 * 125.80454 * 180.28956 * 14 13 12 38 38 H 1.08994 * 110.36974 * 204.15108 * 15 5 4 39 39 H 1.08997 * 110.45902 * 81.87201 * 15 5 4 40 40 H 1.09000 * 109.47161 * 299.99737 * 19 17 16 41 41 H 1.09001 * 109.46740 * 59.99879 * 19 17 16 42 42 H 0.96995 * 120.00407 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0576 -0.7478 -1.2427 5 6 3.2863 -1.5184 -0.6915 6 1 3.4813 -2.4156 -1.2789 7 7 4.4698 -0.6562 -0.6463 8 6 5.6990 -1.2028 -0.5645 9 8 5.8257 -2.4119 -0.5286 10 6 6.8898 -0.3356 -0.5197 11 6 8.2950 -0.7590 -0.4316 12 6 9.0201 0.3699 -0.4183 13 8 8.1932 1.4246 -0.4899 14 6 6.9188 1.0278 -0.5575 15 6 2.8099 -1.8826 0.7369 16 7 2.0300 -0.7140 1.1839 17 6 1.8073 -0.3620 2.4657 18 8 1.1434 0.6210 2.7180 19 6 2.3783 -1.1934 3.5855 20 16 1.9087 -0.4677 5.1757 21 6 2.6864 -1.6059 6.2731 22 1 3.2436 -2.4422 5.8777 23 6 2.5820 -1.4281 7.6457 24 7 1.9016 -0.4096 8.1277 25 14 3.4060 -2.6352 8.8091 26 1 4.1030 -3.6840 8.0221 27 1 4.3916 -1.9141 9.6540 28 1 2.3790 -3.2668 9.6761 29 1 -0.3634 0.5194 0.8867 30 1 -0.3634 0.5083 -0.8932 31 1 -0.3634 -1.0276 0.0064 32 1 2.3597 -0.0450 -2.0191 33 1 1.3066 -1.4405 -1.6226 34 1 4.3689 0.3081 -0.6753 35 1 8.6673 -1.7717 -0.3860 36 1 10.0973 0.4215 -0.3594 37 1 6.0580 1.6764 -0.6269 38 1 3.6654 -2.0413 1.3932 39 1 2.1805 -2.7722 0.7133 40 1 1.9878 -2.2090 3.5196 41 1 3.4650 -1.2160 3.5035 42 1 1.8284 -0.2856 9.0869 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281157621.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:27 Heat of formation + Delta-G solvation = -50.951190 kcal Electronic energy + Delta-G solvation = -26584.775495 eV Core-core repulsion = 22658.001988 eV Total energy + Delta-G solvation = -3926.773508 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.84481 -40.55844 -39.18482 -37.32425 -34.33603 -33.13995 -32.42088 -32.19780 -30.80150 -29.49017 -28.69978 -26.05790 -25.47714 -24.40455 -22.54748 -21.80341 -21.17124 -20.41082 -18.99883 -18.74364 -17.65616 -17.07737 -16.63904 -16.45371 -16.25319 -15.45822 -15.20521 -15.05787 -14.79770 -14.65126 -14.32149 -13.85344 -13.78648 -13.62782 -13.22143 -13.02345 -12.87467 -12.69154 -12.58125 -12.52557 -12.14114 -11.90418 -11.66467 -11.42574 -11.06046 -11.00671 -10.93366 -10.74315 -10.29335 -10.13043 -9.79913 -9.58187 -9.30769 -9.13609 -9.06436 -8.50777 -8.22934 -6.49591 -6.21093 -3.91472 1.02173 1.77676 2.57769 2.78853 2.88394 3.05450 3.10675 3.22563 3.27220 3.32539 3.61135 4.08242 4.21178 4.24806 4.28300 4.34651 4.63555 4.71863 4.91833 5.04423 5.13838 5.14386 5.17324 5.26236 5.34299 5.36682 5.46316 5.52004 5.56261 5.59964 5.64367 5.65979 5.89638 5.95883 5.97935 6.15120 6.17046 6.23873 6.50691 6.61148 7.16735 7.61160 7.64739 7.93433 8.36773 8.55542 9.24702 10.86422 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.009013 B = 0.003354 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3106.027539 B = 8346.442703 C =10344.966513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.134 3.866 3 H 0.073 0.927 4 C -0.134 4.134 5 C 0.135 3.865 6 H 0.112 0.888 7 N -0.716 5.716 8 C 0.591 3.409 9 O -0.532 6.532 10 C -0.236 4.236 11 C -0.164 4.164 12 C -0.040 4.040 13 O -0.173 6.173 14 C 0.024 3.976 15 C 0.090 3.910 16 N -0.621 5.621 17 C 0.551 3.449 18 O -0.513 6.513 19 C -0.147 4.147 20 S -0.060 6.060 21 C -0.534 4.534 22 H 0.073 0.927 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.271 1.271 27 H -0.280 1.280 28 H -0.279 1.279 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.399 0.601 35 H 0.160 0.840 36 H 0.209 0.791 37 H 0.210 0.790 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.140 1.205 -24.510 25.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.030 3.970 3 H 0.091 0.909 4 C -0.172 4.172 5 C 0.029 3.971 6 H 0.130 0.870 7 N -0.368 5.368 8 C 0.379 3.621 9 O -0.409 6.409 10 C -0.241 4.241 11 C -0.184 4.184 12 C -0.106 4.106 13 O -0.068 6.068 14 C -0.047 4.047 15 C -0.035 4.035 16 N -0.359 5.359 17 C 0.340 3.660 18 O -0.387 6.387 19 C -0.298 4.298 20 S 0.166 5.834 21 C -0.682 4.682 22 H 0.091 0.909 23 C -0.135 4.135 24 N -0.503 5.503 25 Si 0.744 3.256 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.205 1.205 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.234 0.766 35 H 0.178 0.822 36 H 0.226 0.774 37 H 0.227 0.773 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.266 2.197 -23.852 25.031 hybrid contribution 1.214 -1.708 0.566 2.170 sum 8.480 0.489 -23.286 24.786 Atomic orbital electron populations 1.22135 0.94482 1.02438 1.03063 1.21490 0.95061 0.96170 0.84243 0.90872 1.23083 0.96723 1.00245 0.97156 1.22070 0.84100 0.94663 0.96236 0.87047 1.45732 1.05141 1.10182 1.75728 1.17261 0.81900 0.87306 0.75660 1.90806 1.86373 1.14223 1.49496 1.21504 0.94840 0.93271 1.14438 1.22795 0.90460 1.00201 1.04918 1.23980 0.96365 0.83711 1.06516 1.83802 1.16017 1.36567 1.70411 1.24457 0.85593 0.94514 1.00104 1.22733 0.96061 0.89266 0.95433 1.48606 1.54014 1.28460 1.04846 1.19984 0.79656 0.85016 0.81368 1.90690 1.38490 1.27005 1.82551 1.23522 1.03623 1.02643 1.00009 1.85333 1.69962 1.37464 0.90602 1.22908 1.38430 1.13796 0.93094 0.90904 1.24981 0.95208 0.95992 0.97327 1.70025 1.38671 1.28106 1.13538 0.86128 0.79023 0.80327 0.80103 1.19577 1.20552 1.20529 0.90688 0.92002 0.92442 0.89354 0.88588 0.76636 0.82224 0.77397 0.77338 0.89853 0.90241 0.89358 0.89522 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 9.11 37.15 0.34 -1.44 16 2 C 0.13 1.40 3.45 -66.95 -0.23 1.17 16 3 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 4 C -0.13 -0.90 6.05 -24.89 -0.15 -1.05 16 5 C 0.13 1.17 3.32 -65.78 -0.22 0.95 16 6 H 0.11 0.96 7.73 -51.93 -0.40 0.56 16 7 N -0.72 -6.29 5.21 -52.82 -0.28 -6.57 16 8 C 0.59 6.84 7.81 -12.54 -0.10 6.74 16 9 O -0.53 -8.04 16.73 5.26 0.09 -7.95 16 10 C -0.24 -2.40 6.31 -103.27 -0.65 -3.05 16 11 C -0.16 -1.56 11.01 -37.45 -0.41 -1.97 16 12 C -0.04 -0.30 12.03 29.30 0.35 0.06 16 13 O -0.17 -1.46 10.52 7.68 0.08 -1.38 16 14 C 0.02 0.18 11.61 30.08 0.35 0.53 16 15 C 0.09 1.03 6.38 -2.52 -0.02 1.02 16 16 N -0.62 -8.54 3.06 -163.01 -0.50 -9.04 16 17 C 0.55 10.47 7.66 -10.98 -0.08 10.39 16 18 O -0.51 -11.48 14.90 5.56 0.08 -11.40 16 19 C -0.15 -3.11 5.16 36.01 0.19 -2.92 16 20 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 21 C -0.53 -15.49 9.50 30.94 0.29 -15.20 16 22 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 23 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 24 N -0.87 -26.37 13.22 55.49 0.73 -25.64 16 25 Si 0.92 21.76 29.55 -169.99 -5.02 16.74 16 26 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 28 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 29 H 0.07 1.08 6.88 -51.93 -0.36 0.73 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.10 0.54 7.85 -51.93 -0.41 0.13 16 34 H 0.40 2.61 7.59 -40.82 -0.31 2.30 16 35 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 36 H 0.21 0.74 8.06 -52.49 -0.42 0.32 16 37 H 0.21 0.83 7.47 -52.49 -0.39 0.43 16 38 H 0.08 1.12 7.48 -51.93 -0.39 0.73 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 41 H 0.09 1.76 7.85 -51.91 -0.41 1.35 16 42 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 373.94 15.07 5.64 5.64 Total: -1.00 -38.10 373.94 -7.42 -45.52 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -5.59 Total: 0.68 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -0.44 Total: -2.74 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: -0.04 Total: -41.24 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: 0.25 Total: -20.72 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -38.10 -7.42 -45.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281157621.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.430 kcal (2) G-P(sol) polarization free energy of solvation -38.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds