Wall clock time and date at job start Tue Mar 31 2020 21:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47283 * 2 1 4 4 C 1.46499 * 120.00148 * 274.47168 * 3 2 1 5 5 C 1.50696 * 109.46803 * 264.95078 * 4 3 2 6 6 H 1.07997 * 120.00524 * 359.97438 * 5 4 3 7 7 C 1.37889 * 119.99897 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99569 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99920 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47103 * 60.00363 * 9 7 5 11 11 H 1.48497 * 109.47058 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47086 * 299.99949 * 9 7 5 13 13 C 1.34775 * 119.99736 * 94.46745 * 3 2 1 14 14 O 1.21365 * 119.99916 * 354.63183 * 13 3 2 15 15 C 1.49344 * 120.00290 * 174.63740 * 13 3 2 16 16 O 1.21391 * 119.99743 * 354.43346 * 15 13 3 17 17 N 1.34771 * 120.00541 * 174.44024 * 15 13 3 18 18 C 1.39845 * 120.00367 * 184.99664 * 17 15 13 19 19 C 1.39108 * 119.96632 * 215.15382 * 18 17 15 20 20 C 1.38097 * 120.27887 * 179.97438 * 19 18 17 21 21 C 1.38342 * 120.20263 * 359.97438 * 20 19 18 22 22 F 1.35098 * 120.03650 * 179.97438 * 21 20 19 23 23 C 1.39881 * 119.92804 * 0.02562 * 21 20 19 24 24 C 1.47579 * 120.13537 * 179.97438 * 23 21 20 25 25 O 1.21484 * 120.00311 * 359.72572 * 24 23 21 26 26 O 1.34734 * 120.00184 * 179.97438 * 24 23 21 27 27 C 1.38535 * 119.96409 * 35.42443 * 18 17 15 28 28 H 1.09007 * 109.47350 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47186 * 299.99501 * 1 2 3 30 30 H 1.09003 * 109.47276 * 59.99612 * 1 2 3 31 31 H 1.09008 * 109.46968 * 240.00507 * 2 1 3 32 32 H 1.08998 * 109.47323 * 120.00865 * 2 1 3 33 33 H 1.08999 * 109.47317 * 24.95328 * 4 3 2 34 34 H 1.09000 * 109.47195 * 144.95533 * 4 3 2 35 35 H 0.97002 * 119.99527 * 179.97438 * 8 7 5 36 36 H 0.97001 * 120.00276 * 4.99517 * 17 15 13 37 37 H 1.08005 * 119.86291 * 359.97438 * 19 18 17 38 38 H 1.07998 * 119.89421 * 179.97438 * 20 19 18 39 39 H 0.96691 * 117.00125 * 180.02562 * 26 24 23 40 40 H 1.07993 * 120.10276 * 0.02562 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1693 2.1048 -1.2648 5 6 3.5920 1.9830 -1.7465 6 1 4.3119 1.4230 -1.1681 7 6 3.9747 2.5865 -2.9257 8 7 3.0982 3.2689 -3.6297 9 14 5.7381 2.4349 -3.5231 10 1 6.0693 1.0022 -3.7295 11 1 5.8911 3.1685 -4.8051 12 1 6.6556 3.0142 -2.5093 13 6 2.3287 1.9862 1.1637 14 8 2.1123 1.4232 2.2168 15 6 2.9387 3.3493 1.1572 16 8 3.2483 3.8707 0.1056 17 7 3.1458 4.0005 2.3188 18 6 3.6192 5.3164 2.3081 19 6 4.4894 5.7499 3.3031 20 6 4.9612 7.0477 3.2984 21 6 4.5719 7.9262 2.3032 22 9 5.0352 9.1953 2.3022 23 6 3.6972 7.4994 1.2985 24 6 3.2785 8.4329 0.2349 25 8 3.6895 9.5761 0.2335 26 8 2.4362 8.0188 -0.7318 27 6 3.2166 6.1884 1.3098 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5140 0.8899 33 1 1.4960 1.6798 -2.0092 34 1 1.9259 3.1564 -1.1131 35 1 3.3675 3.6938 -4.4591 36 1 2.9664 3.5566 3.1624 37 1 4.7973 5.0686 4.0825 38 1 5.6362 7.3778 4.0742 39 1 2.1908 8.6659 -1.4070 40 1 2.5373 5.8538 0.5398 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610000567.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:54 Heat of formation + Delta-G solvation = -155.693106 kcal Electronic energy + Delta-G solvation = -29627.879341 eV Core-core repulsion = 25130.350707 eV Total energy + Delta-G solvation = -4497.528634 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.116 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.94323 -40.82061 -40.07477 -39.01252 -37.62000 -36.02115 -35.79499 -34.30507 -32.69085 -31.74258 -30.57221 -29.46251 -27.13221 -25.07132 -24.96990 -23.22189 -23.07293 -21.96866 -20.77970 -19.48084 -18.33756 -17.83493 -17.45975 -17.11188 -16.65792 -16.25861 -16.11623 -15.97034 -15.65672 -15.18146 -15.14590 -14.90257 -14.34233 -14.27026 -13.81047 -13.67069 -13.47580 -13.23478 -13.03488 -12.83785 -12.54347 -12.35922 -12.02055 -11.82155 -11.71965 -11.57879 -11.49217 -11.01827 -10.85539 -10.69968 -10.64604 -10.54397 -10.15812 -10.02579 -9.74723 -9.41785 -8.82891 -8.38251 -8.16160 -7.93999 -6.06232 -4.07898 0.40414 0.95515 1.96513 2.45071 2.69189 2.95012 3.30476 3.35206 3.37814 3.43194 3.79272 3.94700 4.02649 4.41681 4.45737 4.72163 4.85268 5.00658 5.15297 5.24627 5.30849 5.46607 5.62931 5.63430 5.74169 5.81729 5.88511 6.08100 6.10052 6.21970 6.24033 6.48233 6.49794 6.61226 6.71930 7.19582 7.28344 7.40612 7.81612 7.89706 7.99817 8.13051 8.21004 8.55121 8.90520 9.54651 11.02617 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.009981 B = 0.004360 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2804.722996 B = 6421.209760 C = 7879.730301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.111 3.889 3 N -0.557 5.557 4 C 0.231 3.769 5 C -0.514 4.514 6 H 0.053 0.947 7 C 0.071 3.929 8 N -0.890 5.890 9 Si 0.892 3.108 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.278 1.278 13 C 0.508 3.492 14 O -0.561 6.561 15 C 0.484 3.516 16 O -0.421 6.421 17 N -0.663 5.663 18 C 0.139 3.861 19 C -0.082 4.082 20 C -0.146 4.146 21 C 0.141 3.859 22 F -0.118 7.118 23 C -0.144 4.144 24 C 0.530 3.470 25 O -0.508 6.508 26 O -0.499 6.499 27 C -0.035 4.035 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.034 0.966 34 H 0.060 0.940 35 H 0.263 0.737 36 H 0.419 0.581 37 H 0.145 0.855 38 H 0.149 0.851 39 H 0.416 0.584 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.199 3.709 12.192 12.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.012 4.012 3 N -0.287 5.287 4 C 0.113 3.887 5 C -0.552 4.552 6 H 0.071 0.929 7 C -0.132 4.132 8 N -0.528 5.528 9 Si 0.720 3.280 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.203 1.203 13 C 0.290 3.710 14 O -0.442 6.442 15 C 0.266 3.734 16 O -0.287 6.287 17 N -0.313 5.313 18 C 0.044 3.956 19 C -0.103 4.103 20 C -0.165 4.165 21 C 0.120 3.880 22 F -0.096 7.096 23 C -0.147 4.147 24 C 0.374 3.626 25 O -0.398 6.398 26 O -0.310 6.310 27 C -0.055 4.055 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.052 0.948 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.257 0.743 37 H 0.163 0.837 38 H 0.167 0.833 39 H 0.275 0.725 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -1.929 3.884 11.941 12.704 hybrid contribution 0.981 0.380 -0.592 1.207 sum -0.948 4.264 11.349 12.160 Atomic orbital electron populations 1.22104 0.96145 1.01663 1.02293 1.21448 0.94016 0.82628 1.03107 1.48314 1.58672 1.13522 1.08183 1.19885 0.97766 0.93118 0.77966 1.21112 0.94803 1.32942 1.06372 0.92871 1.24772 0.97142 0.94785 0.96454 1.69891 1.34023 1.33716 1.15189 0.86664 0.85319 0.78018 0.78019 1.20375 1.21236 1.20325 1.19650 0.80330 0.86377 0.84644 1.90658 1.55985 1.66578 1.31000 1.20563 0.81186 0.87818 0.83844 1.91074 1.42644 1.66225 1.28777 1.43277 1.66107 1.11400 1.10554 1.17596 0.96351 0.84693 0.96998 1.21048 0.94246 0.95816 0.99166 1.20842 1.03257 0.93074 0.99374 1.17598 0.95192 0.80193 0.94973 1.91580 1.86388 1.35756 1.95905 1.18925 1.04328 0.94843 0.96622 1.20473 0.75757 0.85645 0.80689 1.90927 1.53884 1.19808 1.75194 1.84634 1.60206 1.48279 1.37858 1.21478 0.96769 0.89423 0.97862 0.91994 0.92678 0.92183 0.89814 0.90534 0.94762 0.92206 0.92774 0.74302 0.83733 0.83324 0.72501 0.81994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 10.24 37.16 0.38 -1.94 16 2 C 0.11 1.84 6.12 -4.04 -0.02 1.82 16 3 N -0.56 -11.13 2.47 -175.61 -0.43 -11.56 16 4 C 0.23 5.45 4.77 -5.20 -0.02 5.42 16 5 C -0.51 -13.48 7.74 -34.44 -0.27 -13.74 16 6 H 0.05 1.42 7.81 -52.49 -0.41 1.01 16 7 C 0.07 1.93 5.46 -17.82 -0.10 1.83 16 8 N -0.89 -25.02 13.29 55.43 0.74 -24.29 16 9 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.51 9.79 7.68 -11.64 -0.09 9.70 16 14 O -0.56 -10.68 16.05 5.48 0.09 -10.60 16 15 C 0.48 8.97 7.42 -11.64 -0.09 8.88 16 16 O -0.42 -9.29 9.97 5.46 0.05 -9.24 16 17 N -0.66 -9.39 5.32 -10.32 -0.05 -9.44 16 18 C 0.14 1.87 6.23 -83.77 -0.52 1.35 16 19 C -0.08 -0.84 9.95 -39.31 -0.39 -1.24 16 20 C -0.15 -1.52 10.00 -39.59 -0.40 -1.91 16 21 C 0.14 1.91 7.28 -38.93 -0.28 1.63 16 22 F -0.12 -1.75 15.54 2.25 0.03 -1.72 16 23 C -0.14 -2.17 5.88 -104.95 -0.62 -2.79 16 24 C 0.53 8.31 8.27 34.54 0.29 8.60 16 25 O -0.51 -8.92 16.12 -19.25 -0.31 -9.23 16 26 O -0.50 -6.90 12.68 -40.58 -0.51 -7.41 16 27 C -0.03 -0.53 8.21 -38.95 -0.32 -0.85 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.08 1.38 8.11 -51.92 -0.42 0.96 16 32 H 0.08 1.23 7.37 -51.93 -0.38 0.85 16 33 H 0.03 0.84 8.03 -51.93 -0.42 0.42 16 34 H 0.06 1.52 5.92 -51.93 -0.31 1.21 16 35 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 36 H 0.42 4.86 8.30 -40.82 -0.34 4.52 16 37 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 38 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 39 H 0.42 3.71 9.11 45.56 0.42 4.13 16 40 H 0.16 2.80 6.11 -52.49 -0.32 2.48 16 LS Contribution 357.15 15.07 5.38 5.38 Total: -1.00 -33.20 357.15 -5.92 -39.12 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -3.43 Total: 5.84 kcal Atomic # 6 Polarization: 19.22 SS G_CDS: -2.45 Total: 16.77 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: 0.25 Total: -45.29 kcal Atomic # 8 Polarization: -35.80 SS G_CDS: -0.68 Total: -36.48 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.03 Total: -1.72 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.20 -5.92 -39.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610000567.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.574 kcal (2) G-P(sol) polarization free energy of solvation -33.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds