Wall clock time and date at job start Tue Mar 31 2020 20:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34779 * 120.00325 * 2 1 4 4 O 1.21548 * 120.00299 * 184.71142 * 3 2 1 5 5 C 1.47851 * 119.99653 * 4.71504 * 3 2 1 6 6 C 1.39579 * 120.14005 * 320.36072 * 5 3 2 7 7 C 1.37958 * 119.84701 * 179.97438 * 6 5 3 8 8 C 1.38357 * 120.14798 * 0.28389 * 7 6 5 9 9 S 1.76202 * 119.85286 * 179.70240 * 8 7 6 10 10 O 1.42112 * 106.39910 * 203.53585 * 9 8 7 11 11 O 1.42092 * 106.40500 * 336.45316 * 9 8 7 12 12 N 1.65596 * 107.22137 * 90.00082 * 9 8 7 13 13 C 1.46491 * 120.00425 * 64.99336 * 12 9 8 14 14 C 1.50709 * 109.47305 * 165.00191 * 13 12 9 15 15 H 1.07990 * 119.99559 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99949 * 180.02562 * 14 13 12 17 17 N 1.31506 * 119.99650 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 119.99932 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.46958 * 90.00154 * 18 16 14 20 20 H 1.48503 * 109.46676 * 209.99902 * 18 16 14 21 21 H 1.48500 * 109.47212 * 330.00040 * 18 16 14 22 22 C 1.38361 * 120.29128 * 359.44150 * 8 7 6 23 23 C 1.37950 * 120.14284 * 0.55372 * 22 8 7 24 24 C 1.46501 * 120.00058 * 180.02562 * 2 1 3 25 25 C 1.53000 * 117.49613 * 8.74035 * 24 2 1 26 26 C 1.53002 * 117.49727 * 300.08271 * 24 2 1 27 27 H 1.08997 * 109.47403 * 87.19550 * 1 2 3 28 28 H 1.08997 * 109.47290 * 207.20044 * 1 2 3 29 29 H 1.09006 * 109.46621 * 327.19762 * 1 2 3 30 30 H 1.08000 * 120.07825 * 359.96641 * 6 5 3 31 31 H 1.08004 * 119.92414 * 180.02562 * 7 6 5 32 32 H 0.97000 * 119.99466 * 245.00297 * 12 9 8 33 33 H 1.08999 * 109.47533 * 285.00376 * 13 12 9 34 34 H 1.09004 * 109.46931 * 45.00663 * 13 12 9 35 35 H 0.97007 * 119.99849 * 179.97438 * 17 16 14 36 36 H 1.08002 * 119.92893 * 180.28507 * 22 8 7 37 37 H 1.08007 * 120.07495 * 179.69997 * 23 22 8 38 38 H 1.09003 * 115.55195 * 154.41551 * 24 2 1 39 39 H 1.09000 * 117.50359 * 0.02562 * 25 24 2 40 40 H 1.09004 * 117.49445 * 145.01835 * 25 24 2 41 41 H 1.08998 * 117.49837 * 214.97495 * 26 24 2 42 42 H 1.09000 * 117.49636 * 359.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3513 1.1690 -0.0865 5 6 1.4034 2.4454 0.1053 6 6 0.1963 2.6175 -0.5741 7 6 -0.4852 3.8125 -0.4712 8 6 0.0282 4.8412 0.2985 9 16 -0.8448 6.3671 0.4181 10 8 0.1173 7.3536 0.7654 11 8 -1.6629 6.4533 -0.7405 12 7 -1.8742 6.2430 1.7093 13 6 -1.3359 6.1037 3.0646 14 6 -2.4256 6.3784 4.0688 15 1 -3.4198 6.6310 3.7310 16 6 -2.1533 6.3071 5.4185 17 7 -3.1043 6.5464 6.2947 18 14 -0.4334 5.8708 6.0025 19 1 0.3659 7.1125 6.1596 20 1 -0.5174 5.1677 7.3079 21 1 0.2186 4.9854 5.0044 22 6 1.2214 4.6752 0.9790 23 6 1.9129 3.4852 0.8846 24 6 2.1975 -1.2687 -0.0006 25 6 1.3890 -2.5511 -0.2074 26 6 1.9616 -2.2212 1.1734 27 1 -0.3634 0.0503 -1.0264 28 1 -0.3634 -0.9140 0.4697 29 1 -0.3633 0.8639 0.5568 30 1 -0.2032 1.8169 -1.1790 31 1 -1.4196 3.9468 -0.9960 32 1 -2.8337 6.2625 1.5682 33 1 -0.9605 5.0899 3.2041 34 1 -0.5225 6.8152 3.2074 35 1 -2.9128 6.4959 7.2443 36 1 1.6145 5.4805 1.5818 37 1 2.8467 3.3585 1.4124 38 1 3.2007 -1.2322 -0.4252 39 1 0.3122 -2.4508 -0.3434 40 1 1.8605 -3.3584 -0.7679 41 1 2.8094 -2.8116 1.5207 42 1 1.2617 -1.9036 1.9463 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046061027.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:26 Heat of formation + Delta-G solvation = -36.804289 kcal Electronic energy + Delta-G solvation = -26833.223589 eV Core-core repulsion = 22907.063537 eV Total energy + Delta-G solvation = -3926.160052 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.86429 -38.86178 -37.54611 -36.94280 -35.55177 -34.86213 -34.46364 -32.28144 -31.49015 -31.27002 -27.63592 -27.46489 -25.09969 -23.10477 -22.82947 -22.15873 -22.07150 -19.88218 -19.36918 -18.03852 -17.92464 -17.44824 -17.07564 -16.20379 -16.06445 -15.83880 -15.31146 -15.17324 -14.83844 -14.58801 -14.37541 -13.87554 -13.59093 -13.42871 -13.35449 -13.18125 -12.96571 -12.76931 -12.58636 -12.53377 -12.10807 -11.92295 -11.80848 -11.72848 -11.49270 -11.37435 -11.01862 -10.98595 -10.91446 -10.67309 -10.24361 -10.05750 -9.60636 -9.54419 -9.24555 -8.98135 -8.92791 -8.59984 -6.25479 -4.27418 0.23788 0.76119 1.08909 2.23085 2.40485 3.18232 3.20643 3.25226 3.27624 3.39682 3.54831 4.00809 4.05812 4.25333 4.26848 4.34558 4.46902 4.50381 4.57654 4.67927 4.75066 4.96344 5.07892 5.08109 5.12729 5.25063 5.26952 5.35073 5.37875 5.52224 5.61470 5.70480 5.77371 5.90319 5.93363 6.07336 6.09896 6.53389 6.74525 6.82511 6.85204 7.30893 7.69752 7.72638 8.29752 8.75988 9.32147 10.86794 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.011133 B = 0.003530 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.489322 B = 7929.529758 C = 9305.318418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.584 5.584 3 C 0.563 3.437 4 O -0.525 6.525 5 C -0.084 4.084 6 C -0.120 4.120 7 C -0.025 4.025 8 C -0.650 4.650 9 S 2.688 3.312 10 O -0.957 6.957 11 O -0.970 6.970 12 N -1.093 6.093 13 C 0.216 3.784 14 C -0.532 4.532 15 H 0.083 0.917 16 C 0.076 3.924 17 N -0.890 5.890 18 Si 0.871 3.129 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.263 1.263 22 C -0.021 4.021 23 C -0.086 4.086 24 C 0.078 3.922 25 C -0.184 4.184 26 C -0.191 4.191 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.142 0.858 31 H 0.148 0.852 32 H 0.417 0.583 33 H 0.020 0.980 34 H 0.033 0.967 35 H 0.268 0.732 36 H 0.150 0.850 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.908 -16.618 -13.133 22.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.316 5.316 3 C 0.352 3.648 4 O -0.401 6.401 5 C -0.087 4.087 6 C -0.139 4.139 7 C -0.044 4.044 8 C -0.735 4.735 9 S 2.775 3.225 10 O -0.947 6.947 11 O -0.960 6.960 12 N -0.856 5.856 13 C 0.091 3.909 14 C -0.571 4.571 15 H 0.101 0.899 16 C -0.128 4.128 17 N -0.528 5.528 18 Si 0.697 3.303 19 H -0.195 1.195 20 H -0.208 1.208 21 H -0.187 1.187 22 C -0.040 4.040 23 C -0.106 4.106 24 C -0.026 4.026 25 C -0.222 4.222 26 C -0.230 4.230 27 H 0.084 0.916 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.160 0.840 31 H 0.166 0.834 32 H 0.253 0.747 33 H 0.037 0.963 34 H 0.050 0.950 35 H 0.078 0.922 36 H 0.167 0.833 37 H 0.158 0.842 38 H 0.153 0.847 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.833 -15.911 -13.494 22.285 hybrid contribution 0.495 -1.082 0.712 1.387 sum 8.328 -16.993 -12.782 22.837 Atomic orbital electron populations 1.22302 0.79009 1.04423 1.02354 1.47163 1.06925 1.04634 1.72883 1.18378 0.86994 0.83266 0.76142 1.90794 1.13459 1.87107 1.48756 1.20072 0.95376 0.94094 0.99188 1.21670 0.93902 0.98497 0.99880 1.20885 0.98890 0.90933 0.93657 1.31513 1.09843 1.23592 1.08508 1.02035 0.73592 0.73985 0.72881 1.93582 1.62485 1.54897 1.83761 1.93550 1.67892 1.86536 1.48055 1.55228 1.19557 1.90440 1.20330 1.19490 0.96448 0.96081 0.78836 1.21020 0.97112 1.49250 0.89739 0.89870 1.24849 0.97164 0.94326 0.96478 1.69869 1.32665 1.48279 1.01965 0.86931 0.84933 0.79593 0.78864 1.19476 1.20785 1.18747 1.21012 0.91724 0.97287 0.93981 1.21288 0.99864 0.91855 0.97586 1.21664 0.97586 0.79918 1.03430 1.23425 1.00587 0.98060 1.00114 1.23442 1.04114 1.03203 0.92215 0.91588 0.90429 0.89473 0.84016 0.83432 0.74721 0.96270 0.94966 0.92215 0.83264 0.84178 0.84684 0.87971 0.87664 0.87805 0.88306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.42 8.20 59.84 0.49 0.91 16 2 N -0.58 -5.70 3.21 -175.05 -0.56 -6.26 16 3 C 0.56 7.19 7.35 -12.33 -0.09 7.10 16 4 O -0.52 -8.28 16.61 5.32 0.09 -8.19 16 5 C -0.08 -1.05 5.22 -104.97 -0.55 -1.60 16 6 C -0.12 -1.30 7.54 -39.18 -0.30 -1.59 16 7 C -0.02 -0.30 9.50 -39.64 -0.38 -0.68 16 8 C -0.65 -9.45 5.95 -39.49 -0.24 -9.69 16 9 S 2.69 44.94 5.73 -107.50 -0.62 44.32 16 10 O -0.96 -18.63 16.74 -57.17 -0.96 -19.59 16 11 O -0.97 -16.97 17.27 -57.17 -0.99 -17.96 16 12 N -1.09 -19.92 5.99 -11.66 -0.07 -19.99 16 13 C 0.22 4.71 5.04 -5.19 -0.03 4.69 16 14 C -0.53 -13.92 9.83 -34.44 -0.34 -14.25 16 15 H 0.08 2.31 7.90 -52.49 -0.41 1.89 16 16 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 17 N -0.89 -25.69 13.96 55.43 0.77 -24.92 16 18 Si 0.87 19.98 27.47 -169.99 -4.67 15.32 16 19 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.26 -5.62 6.54 56.52 0.37 -5.25 16 22 C -0.02 -0.30 9.50 -39.64 -0.38 -0.68 16 23 C -0.09 -1.16 9.64 -39.19 -0.38 -1.54 16 24 C 0.08 0.67 6.24 -67.93 -0.42 0.24 16 25 C -0.18 -1.06 9.72 -26.69 -0.26 -1.32 16 26 C -0.19 -1.33 10.14 -26.69 -0.27 -1.60 16 27 H 0.07 0.34 7.00 -51.93 -0.36 -0.02 16 28 H 0.08 0.42 6.20 -51.93 -0.32 0.10 16 29 H 0.09 0.66 5.71 -51.93 -0.30 0.37 16 30 H 0.14 1.07 5.40 -52.49 -0.28 0.79 16 31 H 0.15 1.51 7.60 -52.48 -0.40 1.12 16 32 H 0.42 7.04 8.54 -34.46 -0.29 6.74 16 33 H 0.02 0.41 7.20 -51.93 -0.37 0.03 16 34 H 0.03 0.72 7.18 -51.93 -0.37 0.34 16 35 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.15 2.05 7.61 -52.49 -0.40 1.65 16 37 H 0.14 1.72 8.06 -52.48 -0.42 1.30 16 38 H 0.14 1.26 7.62 -51.93 -0.40 0.87 16 39 H 0.10 0.50 6.40 -51.93 -0.33 0.17 16 40 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 362.24 15.07 5.46 5.46 Total: -1.00 -34.22 362.24 -9.87 -44.09 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -5.10 Total: 5.77 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: -3.23 Total: -18.05 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: 0.14 Total: -51.17 kcal Atomic # 8 Polarization: -43.88 SS G_CDS: -1.86 Total: -45.73 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -4.67 Total: 15.32 kcal Atomic # 16 Polarization: 44.94 SS G_CDS: -0.62 Total: 44.32 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.22 -9.87 -44.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046061027.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.284 kcal (2) G-P(sol) polarization free energy of solvation -34.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds