Wall clock time and date at job start Tue Mar 31 2020 20:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46505 * 119.99910 * 2 1 4 4 C 1.34771 * 120.00345 * 180.02562 * 2 1 3 5 5 O 1.21555 * 119.99724 * 4.15103 * 4 2 1 6 6 C 1.47846 * 120.00255 * 184.15448 * 4 2 1 7 7 C 1.39600 * 120.14115 * 146.89834 * 6 4 2 8 8 C 1.37941 * 119.84776 * 180.24700 * 7 6 4 9 9 C 1.38381 * 120.14243 * 359.52114 * 8 7 6 10 10 C 1.38329 * 120.29695 * 0.22491 * 9 8 7 11 11 S 1.76201 * 119.92974 * 180.02562 * 10 9 8 12 12 O 1.42095 * 106.40404 * 203.54116 * 11 10 9 13 13 O 1.42104 * 106.40171 * 336.46677 * 11 10 9 14 14 N 1.65607 * 107.21719 * 90.00250 * 11 10 9 15 15 C 1.36938 * 119.99691 * 89.99928 * 14 11 10 16 16 H 1.07999 * 119.99940 * 228.77614 * 15 14 11 17 17 C 1.38819 * 119.99843 * 48.78228 * 15 14 11 18 18 N 1.31614 * 120.00083 * 24.89644 * 17 15 14 19 19 Si 1.86800 * 119.99644 * 204.89599 * 17 15 14 20 20 H 1.48506 * 109.46831 * 60.00192 * 19 17 15 21 21 H 1.48500 * 109.46734 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.47109 * 300.00063 * 19 17 15 23 23 C 1.46498 * 120.00184 * 270.00174 * 14 11 10 24 24 C 1.52997 * 117.49964 * 193.28736 * 23 14 11 25 25 C 1.52997 * 117.49856 * 124.62808 * 23 14 11 26 26 C 1.37980 * 120.14779 * 0.02562 * 10 9 8 27 27 H 1.08994 * 109.47287 * 239.99766 * 1 2 3 28 28 H 1.09005 * 109.47397 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47199 * 119.99557 * 1 2 3 30 30 H 1.08997 * 109.47640 * 267.46535 * 3 2 1 31 31 H 1.09001 * 109.46895 * 27.46930 * 3 2 1 32 32 H 1.09003 * 109.46569 * 147.46044 * 3 2 1 33 33 H 1.07993 * 120.07943 * 0.04319 * 7 6 4 34 34 H 1.07994 * 119.92291 * 179.79005 * 8 7 6 35 35 H 1.08005 * 119.84925 * 180.25530 * 9 8 7 36 36 H 0.96998 * 120.00045 * 174.93685 * 18 17 15 37 37 H 1.09002 * 115.54776 * 338.96213 * 23 14 11 38 38 H 1.09000 * 117.49509 * 0.02562 * 24 23 14 39 39 H 1.09004 * 117.49298 * 145.01962 * 24 23 14 40 40 H 1.09004 * 117.50072 * 214.98157 * 25 23 14 41 41 H 1.09000 * 117.49666 * 359.97438 * 25 23 14 42 42 H 1.07995 * 120.08057 * 179.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1671 -0.0005 5 8 1.5336 -2.2184 -0.0772 6 6 3.6145 -1.1688 0.0922 7 6 4.2739 -2.2044 0.7567 8 6 5.6505 -2.1973 0.8440 9 6 6.3781 -1.1718 0.2662 10 6 5.7311 -0.1454 -0.3982 11 16 6.6673 1.1552 -1.1309 12 8 5.7949 2.2728 -1.2266 13 8 7.9084 1.1948 -0.4399 14 7 7.0115 0.6963 -2.6844 15 6 6.1510 1.0180 -3.6999 16 1 5.8373 0.2600 -4.4024 17 6 5.6821 2.3184 -3.8265 18 7 6.3814 3.3206 -3.3379 19 14 4.0586 2.6459 -4.6905 20 1 2.9660 1.9385 -3.9756 21 1 3.7846 4.1054 -4.6925 22 1 4.1344 2.1540 -6.0896 23 6 8.2365 -0.0539 -2.9723 24 6 8.6599 -0.1800 -4.4371 25 6 8.0907 -1.3932 -3.6974 26 6 4.3543 -0.1377 -0.4884 27 1 -0.3633 -0.5138 0.8899 28 1 -0.3634 1.0277 0.0005 29 1 -0.3633 -0.5138 -0.8900 30 1 2.4186 1.5608 -1.0266 31 1 1.5895 2.0393 0.4740 32 1 3.1294 1.1502 0.5528 33 1 3.7074 -3.0076 1.2042 34 1 6.1616 -2.9961 1.3607 35 1 7.4561 -1.1731 0.3339 36 1 6.0918 4.2338 -3.4899 37 1 9.0260 0.0308 -2.2256 38 1 8.0273 0.2956 -5.1865 39 1 9.7282 -0.1785 -4.6540 40 1 8.7846 -2.1895 -3.4281 41 1 7.0834 -1.7164 -3.9599 42 1 3.8503 0.6643 -1.0070 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051155827.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:24 Heat of formation + Delta-G solvation = -19.703667 kcal Electronic energy + Delta-G solvation = -28615.566099 eV Core-core repulsion = 24690.147586 eV Total energy + Delta-G solvation = -3925.418513 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.22136 -37.99189 -37.22114 -35.79261 -35.57293 -34.22680 -33.35682 -31.34962 -30.88552 -30.66032 -27.86794 -26.40016 -25.04120 -22.94857 -22.60261 -21.60835 -20.63960 -19.96342 -18.93961 -17.55317 -16.69022 -16.51660 -16.05594 -15.94379 -15.72574 -15.30132 -15.00148 -14.74132 -14.21445 -13.96919 -13.82582 -13.48660 -13.30518 -13.03496 -12.74374 -12.57644 -12.42034 -12.32097 -11.90771 -11.88405 -11.64897 -11.47361 -11.20958 -11.08866 -10.88480 -10.68387 -10.52503 -10.45775 -10.37850 -10.05554 -9.97554 -9.60052 -9.44820 -8.96786 -8.75790 -8.70340 -8.64097 -7.59934 -6.63315 -4.24304 1.05911 1.40237 1.87894 2.85646 3.02757 3.12935 3.18538 3.19497 3.85891 4.02471 4.48977 4.54959 4.67445 4.82708 4.98350 5.12265 5.18902 5.21006 5.29255 5.36396 5.46929 5.58176 5.61655 5.69160 5.71207 5.73916 5.81905 5.86538 5.88534 5.99819 6.19512 6.28386 6.34448 6.39717 6.47823 6.51666 6.63367 6.71651 6.97053 7.08962 7.30146 7.31198 7.42991 8.10877 8.17933 8.78011 9.20905 10.41726 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.010951 B = 0.006021 C = 0.004721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.227468 B = 4649.240362 C = 5929.017886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.618 5.618 3 C 0.062 3.938 4 C 0.564 3.436 5 O -0.543 6.543 6 C -0.165 4.165 7 C -0.036 4.036 8 C -0.155 4.155 9 C -0.009 4.009 10 C -0.667 4.667 11 S 2.559 3.441 12 O -0.943 6.943 13 O -1.011 7.011 14 N -0.784 5.784 15 C -0.284 4.284 16 H 0.083 0.917 17 C 0.063 3.937 18 N -0.769 5.769 19 Si 0.919 3.081 20 H -0.267 1.267 21 H -0.279 1.279 22 H -0.271 1.271 23 C 0.095 3.905 24 C -0.163 4.163 25 C -0.212 4.212 26 C -0.002 4.002 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.134 0.866 36 H 0.282 0.718 37 H 0.120 0.880 38 H 0.108 0.892 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.235 -4.593 3.369 7.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.351 5.351 3 C -0.081 4.081 4 C 0.354 3.646 5 O -0.421 6.421 6 C -0.169 4.169 7 C -0.055 4.055 8 C -0.173 4.173 9 C -0.028 4.028 10 C -0.743 4.743 11 S 2.658 3.342 12 O -0.931 6.931 13 O -1.000 7.000 14 N -0.605 5.605 15 C -0.432 4.432 16 H 0.100 0.900 17 C -0.156 4.156 18 N -0.403 5.403 19 Si 0.745 3.255 20 H -0.192 1.192 21 H -0.204 1.204 22 H -0.197 1.197 23 C -0.015 4.015 24 C -0.203 4.203 25 C -0.252 4.252 26 C -0.021 4.021 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.146 0.854 34 H 0.147 0.853 35 H 0.152 0.848 36 H 0.093 0.907 37 H 0.138 0.862 38 H 0.127 0.873 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.111 0.889 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.359 -4.229 4.197 7.383 hybrid contribution -1.145 -0.403 -0.220 1.234 sum -5.504 -4.632 3.978 8.220 Atomic orbital electron populations 1.21622 0.78877 1.02346 1.02263 1.47665 1.07128 1.06554 1.73730 1.22477 0.98013 0.84482 1.03083 1.18389 0.87243 0.83150 0.75827 1.90731 1.70064 1.31074 1.50234 1.19919 0.92430 0.98642 1.05885 1.21222 0.94436 0.95440 0.94374 1.21188 0.93775 0.99742 1.02615 1.21113 1.00219 0.90930 0.90533 1.32772 1.07213 1.21908 1.12379 1.10832 0.73459 0.76370 0.73539 1.93419 1.66977 1.47590 1.85124 1.93304 1.43992 1.87746 1.74992 1.52379 1.22843 1.66064 1.19250 1.18947 1.23841 0.93293 1.07101 0.89950 1.25676 0.98792 0.95229 0.95945 1.69816 1.35468 1.00227 1.34796 0.86118 0.82226 0.77895 0.79295 1.19242 1.20419 1.19659 1.21391 0.89579 0.94400 0.96082 1.23085 1.00073 1.01147 0.95975 1.23338 1.02167 0.92161 1.07529 1.21623 0.92898 0.95252 0.92311 0.92225 0.90519 0.91964 0.90904 0.90712 0.89676 0.85354 0.85327 0.84782 0.90738 0.86220 0.87340 0.89797 0.89804 0.88934 0.83190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.07 10.17 59.85 0.61 1.68 16 2 N -0.62 -9.29 3.27 -190.64 -0.62 -9.92 16 3 C 0.06 0.87 8.77 59.85 0.52 1.39 16 4 C 0.56 10.03 7.43 -12.33 -0.09 9.94 16 5 O -0.54 -10.75 16.79 5.32 0.09 -10.66 16 6 C -0.17 -2.96 5.41 -104.97 -0.57 -3.53 16 7 C -0.04 -0.58 9.61 -39.18 -0.38 -0.95 16 8 C -0.15 -2.37 10.03 -39.64 -0.40 -2.77 16 9 C -0.01 -0.16 9.52 -39.50 -0.38 -0.53 16 10 C -0.67 -13.50 5.97 -39.64 -0.24 -13.74 16 11 S 2.56 60.24 5.44 -107.50 -0.59 59.66 16 12 O -0.94 -24.15 13.30 -57.17 -0.76 -24.92 16 13 O -1.01 -25.41 16.02 -57.17 -0.92 -26.33 16 14 N -0.78 -17.93 3.06 -53.43 -0.16 -18.10 16 15 C -0.28 -6.66 7.56 -15.06 -0.11 -6.77 16 16 H 0.08 1.84 7.83 -52.49 -0.41 1.43 16 17 C 0.06 1.51 4.01 -17.43 -0.07 1.44 16 18 N -0.77 -19.85 11.54 55.49 0.64 -19.21 16 19 Si 0.92 18.84 29.62 -169.99 -5.04 13.80 16 20 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 21 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 22 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 23 C 0.09 1.89 6.43 -67.93 -0.44 1.45 16 24 C -0.16 -2.87 9.86 -26.70 -0.26 -3.13 16 25 C -0.21 -3.56 10.18 -26.70 -0.27 -3.83 16 26 C 0.00 -0.03 6.98 -39.18 -0.27 -0.31 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.08 0.68 7.76 -51.93 -0.40 0.27 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 1.09 6.99 -51.93 -0.36 0.73 16 31 H 0.07 0.81 7.87 -51.93 -0.41 0.40 16 32 H 0.08 1.29 5.43 -51.93 -0.28 1.00 16 33 H 0.13 1.85 7.97 -52.49 -0.42 1.43 16 34 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 35 H 0.13 2.24 7.60 -52.48 -0.40 1.84 16 36 H 0.28 6.86 8.32 -40.82 -0.34 6.52 16 37 H 0.12 2.34 7.31 -51.93 -0.38 1.96 16 38 H 0.11 2.04 7.14 -51.93 -0.37 1.67 16 39 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.09 1.61 8.06 -51.93 -0.42 1.20 16 42 H 0.15 2.89 4.33 -52.49 -0.23 2.66 16 LS Contribution 359.54 15.07 5.42 5.42 Total: -1.00 -31.12 359.54 -9.61 -40.72 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -5.33 Total: 9.18 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: -2.34 Total: -19.66 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: -0.15 Total: -47.22 kcal Atomic # 8 Polarization: -60.32 SS G_CDS: -1.59 Total: -61.90 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.04 Total: 13.80 kcal Atomic # 16 Polarization: 60.24 SS G_CDS: -0.59 Total: 59.66 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.12 -9.61 -40.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051155827.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.021 kcal (2) G-P(sol) polarization free energy of solvation -31.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds