Wall clock time and date at job start Tue Mar 31 2020 20:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42096 * 110.54618 * 2 1 4 4 O 1.42102 * 110.54319 * 223.25121 * 2 1 3 5 5 C 1.76203 * 104.44748 * 111.62647 * 2 1 3 6 6 C 1.38375 * 119.92857 * 270.01857 * 5 2 1 7 7 C 1.38341 * 120.29505 * 179.97438 * 6 5 2 8 8 C 1.37977 * 120.13938 * 359.74521 * 7 6 5 9 9 C 1.39551 * 119.85699 * 0.48768 * 8 7 6 10 10 C 1.47848 * 120.14705 * 179.79153 * 9 8 7 11 11 O 1.21549 * 120.00092 * 211.37434 * 10 9 8 12 12 N 1.34772 * 119.99809 * 31.36472 * 10 9 8 13 13 C 1.46967 * 120.59209 * 180.63452 * 12 10 9 14 14 C 1.53376 * 108.63474 * 235.20942 * 13 12 10 15 15 N 1.46962 * 108.63612 * 310.57462 * 14 13 12 16 16 C 1.36928 * 120.59647 * 235.19933 * 15 14 13 17 17 H 1.08000 * 119.99980 * 30.01755 * 16 15 14 18 18 C 1.38808 * 120.00216 * 209.73182 * 16 15 14 19 19 N 1.31620 * 120.00143 * 216.19185 * 18 16 15 20 20 Si 1.86794 * 119.99995 * 36.18996 * 18 16 15 21 21 H 1.48497 * 109.47151 * 95.01849 * 20 18 16 22 22 H 1.48506 * 109.47325 * 215.01904 * 20 18 16 23 23 H 1.48500 * 109.47292 * 335.01362 * 20 18 16 24 24 C 1.46966 * 118.80828 * 55.48191 * 15 14 13 25 25 C 1.46965 * 120.59680 * 0.62183 * 12 10 9 26 26 C 1.37940 * 119.92552 * 90.00024 * 5 2 1 27 27 H 1.08996 * 109.47147 * 308.37958 * 1 2 3 28 28 H 1.09008 * 109.46911 * 68.37087 * 1 2 3 29 29 H 1.08994 * 109.47582 * 188.36874 * 1 2 3 30 30 H 1.08002 * 119.85364 * 0.02785 * 6 5 2 31 31 H 1.08001 * 119.92409 * 180.02562 * 7 6 5 32 32 H 1.08007 * 120.06804 * 180.25454 * 8 7 6 33 33 H 1.08998 * 109.60833 * 115.46632 * 13 12 10 34 34 H 1.08996 * 109.61316 * 354.95620 * 13 12 10 35 35 H 1.09000 * 109.60849 * 190.83189 * 14 13 12 36 36 H 1.08998 * 109.60737 * 70.32152 * 14 13 12 37 37 H 0.97003 * 120.00366 * 180.02562 * 19 18 16 38 38 H 1.08996 * 109.61462 * 64.26393 * 24 15 14 39 39 H 1.08997 * 109.61056 * 184.77554 * 24 15 14 40 40 H 1.08998 * 109.60895 * 244.53180 * 25 12 10 41 41 H 1.08999 * 109.60838 * 4.87236 * 25 12 10 42 42 H 1.07995 * 120.07704 * 359.97438 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9118 5 6 2.2536 -0.6289 1.5862 6 6 2.4254 0.2395 2.6498 7 6 2.7701 -0.2460 3.8985 8 6 2.9395 -1.6016 4.0921 9 6 2.7725 -2.4824 3.0227 10 6 2.9570 -3.9357 3.2219 11 8 3.3747 -4.6256 2.3125 12 7 2.6623 -4.4955 4.4119 13 6 2.8539 -5.9364 4.6287 14 6 1.5278 -6.5407 5.1069 15 7 1.0095 -5.7211 6.2112 16 6 0.7099 -6.2899 7.4202 17 1 1.2561 -7.1579 7.7588 18 6 -0.2918 -5.7474 8.2133 19 7 -0.1632 -5.7409 9.5232 20 14 -1.8224 -5.0264 7.4216 21 1 -2.8940 -6.0539 7.3897 22 1 -2.2828 -3.8552 8.2102 23 1 -1.5071 -4.5967 6.0355 24 6 0.8126 -4.2812 5.9926 25 6 2.1439 -3.6759 5.5162 26 6 2.4253 -1.9858 1.7651 27 1 -0.3633 0.6380 0.8056 28 1 -0.3633 0.3788 -0.9554 29 1 -0.3634 -1.0166 0.1496 30 1 2.2891 1.3010 2.5046 31 1 2.9023 0.4371 4.7245 32 1 3.2046 -1.9798 5.0685 33 1 3.6218 -6.0935 5.3862 34 1 3.1559 -6.4099 3.6945 35 1 1.6948 -7.5600 5.4550 36 1 0.8106 -6.5445 4.2862 37 1 -0.8634 -5.3622 10.0775 38 1 0.0455 -4.1279 5.2336 39 1 0.5070 -3.8080 6.9258 40 1 2.8612 -3.6721 6.3369 41 1 1.9799 -2.6559 5.1689 42 1 2.2901 -2.6626 0.9344 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071138076.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:34 Heat of formation + Delta-G solvation = -8.835836 kcal Electronic energy + Delta-G solvation = -27452.297195 eV Core-core repulsion = 23527.349946 eV Total energy + Delta-G solvation = -3924.947249 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.65816 -38.65171 -37.41545 -37.11178 -36.24774 -34.24167 -32.47818 -31.54418 -31.37961 -30.43699 -29.85739 -27.43326 -24.61621 -24.19096 -23.07073 -22.84611 -21.08453 -19.76402 -19.02945 -18.07266 -17.00280 -16.79659 -16.51415 -16.45170 -15.84295 -15.75611 -15.30173 -15.05281 -14.57244 -14.38963 -14.35743 -13.83309 -13.67508 -13.65919 -13.58115 -13.29155 -12.99115 -12.64982 -12.57767 -12.38676 -12.33638 -12.26350 -11.95831 -11.71820 -11.44679 -11.15446 -10.98148 -10.90420 -10.61534 -10.45549 -10.29054 -9.86227 -9.64695 -9.45797 -9.30177 -8.83054 -8.35856 -7.08452 -6.20541 -3.42935 -0.29925 0.38043 0.76049 2.46601 2.64745 3.04003 3.25736 3.34229 3.39017 3.43919 3.62222 3.78123 4.29563 4.38210 4.41599 4.43746 4.58862 4.61774 4.74245 4.76430 5.05667 5.11593 5.20911 5.25206 5.39218 5.47880 5.49414 5.60208 5.69287 5.75621 5.83511 5.89443 5.94041 6.00600 6.12001 6.38381 6.40014 6.47043 6.63643 6.77455 7.55843 7.79030 8.16160 8.22659 8.78033 9.55512 9.96516 10.94069 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.016606 B = 0.003238 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.695127 B = 8645.435581 C = 9235.643462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 2.503 3.497 3 O -0.938 6.938 4 O -0.933 6.933 5 C -0.671 4.671 6 C -0.007 4.007 7 C -0.146 4.146 8 C -0.047 4.047 9 C -0.142 4.142 10 C 0.552 3.448 11 O -0.544 6.544 12 N -0.589 5.589 13 C 0.096 3.904 14 C 0.131 3.869 15 N -0.599 5.599 16 C -0.278 4.278 17 H 0.082 0.918 18 C 0.043 3.957 19 N -0.878 5.878 20 Si 0.837 3.163 21 H -0.290 1.290 22 H -0.293 1.293 23 H -0.259 1.259 24 C 0.131 3.869 25 C 0.055 3.945 26 C 0.029 3.971 27 H 0.133 0.867 28 H 0.132 0.868 29 H 0.134 0.866 30 H 0.145 0.855 31 H 0.141 0.859 32 H 0.157 0.843 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.027 0.973 37 H 0.264 0.736 38 H 0.033 0.967 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.096 0.904 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.131 14.006 -13.935 19.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.682 3.318 3 O -0.935 6.935 4 O -0.930 6.930 5 C -0.757 4.757 6 C -0.026 4.026 7 C -0.164 4.164 8 C -0.065 4.065 9 C -0.146 4.146 10 C 0.340 3.660 11 O -0.423 6.423 12 N -0.320 5.320 13 C -0.028 4.028 14 C 0.004 3.996 15 N -0.322 5.322 16 C -0.405 4.405 17 H 0.100 0.900 18 C -0.159 4.159 19 N -0.517 5.517 20 Si 0.663 3.337 21 H -0.218 1.218 22 H -0.220 1.220 23 H -0.184 1.184 24 C 0.004 3.996 25 C -0.069 4.069 26 C 0.009 3.991 27 H 0.151 0.849 28 H 0.151 0.849 29 H 0.152 0.848 30 H 0.163 0.837 31 H 0.159 0.841 32 H 0.174 0.826 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.045 0.955 37 H 0.074 0.926 38 H 0.051 0.949 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.114 0.886 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.852 13.867 -14.821 20.496 hybrid contribution -1.603 0.061 0.690 1.746 sum 1.249 13.928 -14.131 19.881 Atomic orbital electron populations 1.30227 1.25501 1.12384 1.11893 1.05120 0.77892 0.74586 0.74169 1.93582 1.77438 1.36486 1.86028 1.93615 1.77250 1.61478 1.60700 1.30538 1.20160 1.02493 1.22484 1.21118 0.90524 0.99511 0.91436 1.21310 1.01957 0.95346 0.97830 1.22260 0.91953 0.93461 0.98826 1.20106 1.05654 0.94030 0.94799 1.18191 0.78459 0.86793 0.82602 1.90767 1.46884 1.63216 1.41396 1.47916 1.62571 1.09886 1.11639 1.22281 0.99858 0.79116 1.01525 1.21382 0.92159 0.95325 0.90693 1.44295 1.75707 1.01679 1.10550 1.18759 1.14974 1.15205 0.91570 0.90039 1.25290 0.98151 0.97830 0.94674 1.70096 1.32915 1.44559 1.04125 0.87549 0.86872 0.78264 0.80984 1.21778 1.21996 1.18366 1.21802 0.92635 0.85633 0.99491 1.23485 0.99171 0.95121 0.89075 1.20968 0.88474 0.93182 0.96462 0.84872 0.84934 0.84768 0.83708 0.84105 0.82570 0.91157 0.89419 0.90488 0.95541 0.92606 0.94939 0.90279 0.90315 0.88624 0.83149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -2.86 10.79 101.05 1.09 -1.77 16 2 S 2.50 20.83 5.80 -107.50 -0.62 20.21 16 3 O -0.94 -10.05 17.12 -57.54 -0.98 -11.04 16 4 O -0.93 -11.32 17.12 -57.54 -0.98 -12.30 16 5 C -0.67 -6.64 5.65 -39.64 -0.22 -6.87 16 6 C -0.01 -0.06 9.47 -39.49 -0.37 -0.43 16 7 C -0.15 -1.28 10.03 -39.64 -0.40 -1.68 16 8 C -0.05 -0.51 7.44 -39.19 -0.29 -0.80 16 9 C -0.14 -1.92 5.53 -104.97 -0.58 -2.50 16 10 C 0.55 9.08 7.46 -12.33 -0.09 8.99 16 11 O -0.54 -10.46 16.15 5.32 0.09 -10.38 16 12 N -0.59 -9.63 2.95 -173.33 -0.51 -10.14 16 13 C 0.10 1.60 6.59 -3.59 -0.02 1.57 16 14 C 0.13 2.46 6.67 -3.60 -0.02 2.44 16 15 N -0.60 -13.17 2.65 -171.77 -0.46 -13.62 16 16 C -0.28 -7.21 9.82 -15.06 -0.15 -7.35 16 17 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 18 C 0.04 1.14 4.80 -17.43 -0.08 1.06 16 19 N -0.88 -25.01 13.97 55.49 0.78 -24.23 16 20 Si 0.84 19.91 26.59 -169.99 -4.52 15.39 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.26 -5.85 5.03 56.52 0.28 -5.56 16 24 C 0.13 2.55 4.59 -3.36 -0.02 2.54 16 25 C 0.06 0.85 5.06 -3.37 -0.02 0.83 16 26 C 0.03 0.36 9.02 -39.18 -0.35 0.00 16 27 H 0.13 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.13 0.37 8.14 -51.92 -0.42 -0.05 16 29 H 0.13 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.15 0.91 7.56 -52.49 -0.40 0.51 16 31 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 32 H 0.16 1.54 5.32 -52.48 -0.28 1.26 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.09 1.43 6.99 -51.93 -0.36 1.07 16 35 H 0.08 1.40 7.93 -51.93 -0.41 0.99 16 36 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.03 0.65 6.74 -51.93 -0.35 0.30 16 39 H 0.08 1.63 5.87 -51.93 -0.30 1.33 16 40 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.10 1.20 3.56 -53.35 -0.19 1.01 16 42 H 0.15 1.87 7.46 -52.49 -0.39 1.48 16 LS Contribution 349.20 15.07 5.26 5.26 Total: -1.00 -36.37 349.20 -8.81 -45.18 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -5.32 Total: -0.36 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -1.53 Total: -3.97 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: -0.19 Total: -47.99 kcal Atomic # 8 Polarization: -31.83 SS G_CDS: -1.88 Total: -33.72 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.52 Total: 15.39 kcal Atomic # 16 Polarization: 20.83 SS G_CDS: -0.62 Total: 20.21 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -36.37 -8.81 -45.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071138076.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.344 kcal (2) G-P(sol) polarization free energy of solvation -36.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds