Wall clock time and date at job start Tue Mar 31 2020 20:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.39510 * 126.27114 * 2 1 4 4 C 1.38600 * 133.30942 * 359.97438 * 3 2 1 5 5 C 1.38363 * 120.16805 * 179.97438 * 4 3 2 6 6 C 1.37965 * 120.38980 * 0.02562 * 5 4 3 7 7 C 1.39671 * 120.13984 * 359.97438 * 6 5 4 8 8 C 1.47531 * 120.20578 * 180.02562 * 7 6 5 9 9 O 1.21597 * 120.00103 * 179.72368 * 8 7 6 10 10 N 1.34780 * 120.00369 * 0.02562 * 8 7 6 11 11 C 1.39124 * 120.00185 * 175.70913 * 10 8 7 12 12 C 1.39519 * 119.83455 * 215.01992 * 11 10 8 13 13 C 1.36353 * 120.16702 * 179.75311 * 12 11 10 14 14 C 1.40881 * 119.83175 * 0.54415 * 13 12 11 15 15 C 1.41139 * 120.16740 * 179.69110 * 14 13 12 16 16 H 1.07992 * 120.00228 * 214.80121 * 15 14 13 17 17 C 1.39906 * 119.99489 * 34.79594 * 15 14 13 18 18 N 1.30876 * 120.00404 * 355.57754 * 17 15 14 19 19 Si 1.86804 * 119.99887 * 175.58047 * 17 15 14 20 20 H 1.48504 * 109.47147 * 89.99691 * 19 17 15 21 21 H 1.48495 * 109.46945 * 210.00067 * 19 17 15 22 22 H 1.48494 * 109.46886 * 330.00039 * 19 17 15 23 23 C 1.40886 * 119.67521 * 359.71307 * 14 13 12 24 24 C 1.36364 * 119.82751 * 0.02562 * 23 14 13 25 25 C 1.39376 * 106.57011 * 180.21267 * 3 2 1 26 26 O 1.35313 * 107.36536 * 0.13323 * 25 3 2 27 27 C 1.34260 * 109.20310 * 0.24146 * 26 25 3 28 28 O 1.21597 * 125.29788 * 180.02562 * 27 26 25 29 29 H 1.08995 * 109.47234 * 89.99754 * 1 2 3 30 30 H 1.09003 * 109.46515 * 209.99700 * 1 2 3 31 31 H 1.08998 * 109.46977 * 329.99016 * 1 2 3 32 32 H 1.07999 * 119.91320 * 0.02562 * 4 3 2 33 33 H 1.07996 * 119.80011 * 180.02562 * 5 4 3 34 34 H 1.07992 * 119.92988 * 179.97438 * 6 5 4 35 35 H 0.97001 * 119.99930 * 355.70655 * 10 8 7 36 36 H 1.08001 * 119.91276 * 0.02562 * 12 11 10 37 37 H 1.07999 * 120.08782 * 180.22928 * 13 12 11 38 38 H 0.96997 * 120.00166 * 180.02562 * 18 17 15 39 39 H 1.07998 * 120.08416 * 179.97438 * 23 14 13 40 40 H 1.08005 * 119.90835 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2904 1.1248 0.0000 4 6 2.0397 2.4879 -0.0005 5 6 3.0905 3.3881 0.0002 6 6 4.3948 2.9384 0.0008 7 6 4.6641 1.5679 0.0013 8 6 6.0583 1.0855 0.0025 9 8 6.2885 -0.1085 0.0080 10 7 7.0769 1.9680 0.0037 11 6 8.3893 1.5156 0.0949 12 6 9.3345 2.2645 0.7965 13 6 10.6215 1.8249 0.8945 14 6 10.9985 0.6169 0.2754 15 6 12.3303 0.1585 0.3669 16 1 12.7787 -0.3669 -0.4632 17 6 13.0694 0.3849 1.5330 18 7 12.5570 1.0960 2.5049 19 14 14.7878 -0.3278 1.7027 20 1 15.7810 0.6453 1.1811 21 1 15.0699 -0.6039 3.1343 22 1 14.8784 -1.5911 0.9277 23 6 10.0398 -0.1313 -0.4358 24 6 8.7552 0.3184 -0.5207 25 6 3.6026 0.6549 -0.0050 26 8 3.5474 -0.6971 -0.0108 27 6 2.2626 -1.0866 -0.0150 28 8 1.8781 -2.2402 -0.0202 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3632 -0.8901 0.5138 31 1 -0.3633 0.8899 0.5140 32 1 1.0216 2.8483 -0.0005 33 1 2.8884 4.4490 0.0003 34 1 5.2092 3.6476 0.0009 35 1 6.8949 2.9188 -0.0592 36 1 9.0450 3.1926 1.2668 37 1 11.3513 2.4038 1.4410 38 1 13.0696 1.2533 3.3132 39 1 10.3216 -1.0580 -0.9133 40 1 8.0190 -0.2543 -1.0653 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156048021.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:39 Heat of formation + Delta-G solvation = -12.848141 kcal Electronic energy + Delta-G solvation = -27526.230002 eV Core-core repulsion = 23465.664815 eV Total energy + Delta-G solvation = -4060.565187 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.110 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.53757 -40.01938 -38.59512 -37.69655 -37.22189 -36.08920 -34.51813 -33.02576 -31.38061 -30.28029 -29.58525 -28.79529 -28.17329 -25.44744 -23.89085 -23.45175 -22.51597 -21.55567 -20.81596 -19.95916 -18.85919 -18.23682 -17.72868 -17.34427 -17.08146 -16.41197 -16.09380 -15.36370 -15.23254 -14.94456 -14.80988 -14.47862 -14.44437 -14.12039 -13.91069 -13.49809 -13.02244 -12.99725 -12.74857 -12.61587 -12.42662 -12.21484 -12.09400 -11.71674 -11.37565 -11.19320 -11.15822 -11.07778 -10.94087 -10.73438 -10.07178 -9.53324 -9.47975 -9.22349 -9.14698 -8.91214 -8.53952 -7.56089 -6.88366 -6.63146 -4.35163 0.30585 0.74766 1.77672 2.19378 2.52543 2.54343 2.86099 3.08219 3.09825 3.12833 3.18955 3.38768 3.67774 3.97458 3.99783 4.18739 4.40213 4.58958 4.65449 4.69958 4.77459 4.80773 4.95784 5.08468 5.30136 5.40319 5.63582 5.71916 5.82356 5.83877 6.07767 6.17119 6.43904 6.70624 6.88097 6.91188 7.05384 7.17972 7.28059 7.37829 7.62718 7.70366 7.83974 8.04869 8.20209 8.30291 8.58663 8.67413 8.91575 8.97979 10.27775 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.023555 B = 0.002347 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.413007 B =11925.704649 C =12756.095643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.552 5.552 3 C 0.060 3.940 4 C -0.083 4.083 5 C -0.103 4.103 6 C -0.079 4.079 7 C -0.082 4.082 8 C 0.534 3.466 9 O -0.509 6.509 10 N -0.639 5.639 11 C 0.000 4.000 12 C -0.118 4.118 13 C -0.142 4.142 14 C 0.101 3.899 15 C -0.459 4.459 16 H 0.076 0.924 17 C 0.069 3.931 18 N -0.810 5.810 19 Si 0.916 3.084 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.263 1.263 23 C -0.205 4.205 24 C -0.083 4.083 25 C 0.093 3.907 26 O -0.209 6.209 27 C 0.631 3.369 28 O -0.484 6.484 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.139 0.861 33 H 0.146 0.854 34 H 0.147 0.853 35 H 0.395 0.605 36 H 0.092 0.908 37 H 0.133 0.867 38 H 0.278 0.722 39 H 0.097 0.903 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.701 9.927 -3.225 24.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.285 5.285 3 C -0.038 4.038 4 C -0.104 4.104 5 C -0.122 4.122 6 C -0.099 4.099 7 C -0.086 4.086 8 C 0.320 3.680 9 O -0.385 6.385 10 N -0.283 5.283 11 C -0.092 4.092 12 C -0.138 4.138 13 C -0.162 4.162 14 C 0.099 3.901 15 C -0.489 4.489 16 H 0.095 0.905 17 C -0.146 4.146 18 N -0.438 5.438 19 Si 0.741 3.259 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.187 1.187 23 C -0.225 4.225 24 C -0.103 4.103 25 C 0.044 3.956 26 O -0.112 6.112 27 C 0.386 3.614 28 O -0.367 6.367 29 H 0.092 0.908 30 H 0.110 0.890 31 H 0.106 0.894 32 H 0.156 0.844 33 H 0.164 0.836 34 H 0.165 0.835 35 H 0.230 0.770 36 H 0.110 0.890 37 H 0.150 0.850 38 H 0.089 0.911 39 H 0.115 0.885 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -21.583 8.235 -2.966 23.290 hybrid contribution 0.428 0.085 0.285 0.521 sum -21.155 8.320 -2.681 22.890 Atomic orbital electron populations 1.21802 0.73617 1.04802 1.03608 1.45766 1.08239 1.04665 1.69845 1.18455 0.88635 0.90186 1.06494 1.20203 1.00846 0.87893 1.01484 1.20925 0.91202 1.00104 0.99987 1.21231 0.98042 0.92631 0.97969 1.19210 0.91953 0.91579 1.05894 1.17940 0.84039 0.86744 0.79235 1.90865 1.84260 1.15277 1.48078 1.42815 1.05101 1.08977 1.71372 1.17216 0.82153 1.00436 1.09443 1.20298 0.94417 0.99250 0.99808 1.21190 0.94732 0.96921 1.03382 1.17748 0.92914 0.89833 0.89643 1.19513 0.96798 1.32171 1.00451 0.90548 1.25893 0.99663 0.93673 0.95378 1.69758 1.37388 1.30982 1.05634 0.86186 0.81434 0.80157 0.78153 1.19509 1.20290 1.18697 1.20820 0.92728 1.00437 1.08531 1.20417 0.96001 0.95299 0.98535 1.18735 0.93091 0.80868 1.02921 1.85220 1.26810 1.20287 1.78890 1.18715 0.78740 0.85481 0.78471 1.91149 1.74160 1.16023 1.55343 0.90769 0.89030 0.89427 0.84365 0.83581 0.83543 0.77027 0.88975 0.84963 0.91105 0.88498 0.87421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.58 11.06 59.85 0.66 1.24 16 2 N -0.55 -5.87 3.21 -126.43 -0.41 -6.28 16 3 C 0.06 0.62 6.84 -83.81 -0.57 0.05 16 4 C -0.08 -0.54 10.02 -39.40 -0.39 -0.94 16 5 C -0.10 -0.61 10.02 -39.64 -0.40 -1.00 16 6 C -0.08 -0.67 9.53 -39.15 -0.37 -1.04 16 7 C -0.08 -1.10 5.88 -104.91 -0.62 -1.72 16 8 C 0.53 9.63 7.59 -12.47 -0.09 9.53 16 9 O -0.51 -11.64 13.50 -6.04 -0.08 -11.72 16 10 N -0.64 -10.89 5.25 -10.68 -0.06 -10.95 16 11 C 0.00 -0.01 6.30 -83.60 -0.53 -0.53 16 12 C -0.12 -2.61 9.90 -39.78 -0.39 -3.01 16 13 C -0.14 -3.61 8.61 -39.26 -0.34 -3.95 16 14 C 0.10 2.71 5.55 -106.79 -0.59 2.11 16 15 C -0.46 -12.22 9.02 -37.86 -0.34 -12.56 16 16 H 0.08 1.96 7.85 -52.49 -0.41 1.54 16 17 C 0.07 1.75 5.42 -17.33 -0.09 1.65 16 18 N -0.81 -21.00 10.60 55.55 0.59 -20.41 16 19 Si 0.92 19.03 29.56 -169.99 -5.03 14.00 16 20 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 21 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 22 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 23 C -0.21 -5.24 9.74 -39.26 -0.38 -5.62 16 24 C -0.08 -2.00 8.61 -39.79 -0.34 -2.34 16 25 C 0.09 1.32 6.94 -38.49 -0.27 1.05 16 26 O -0.21 -3.61 10.03 -26.07 -0.26 -3.87 16 27 C 0.63 9.59 9.07 54.06 0.49 10.08 16 28 O -0.48 -8.49 17.82 -19.00 -0.34 -8.83 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.53 8.08 -51.93 -0.42 0.11 16 31 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.14 0.44 8.06 -52.49 -0.42 0.01 16 33 H 0.15 0.36 8.06 -52.49 -0.42 -0.06 16 34 H 0.15 0.87 6.40 -52.49 -0.34 0.53 16 35 H 0.39 4.89 6.85 -40.82 -0.28 4.61 16 36 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.13 3.45 6.13 -52.49 -0.32 3.13 16 38 H 0.28 6.59 8.30 -40.82 -0.34 6.26 16 39 H 0.10 2.36 8.06 -52.49 -0.42 1.94 16 40 H 0.11 2.60 6.23 -52.48 -0.33 2.28 16 LS Contribution 349.76 15.07 5.27 5.27 Total: -1.00 -35.12 349.76 -8.65 -43.78 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -3.77 Total: 6.00 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -4.58 Total: -6.99 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 0.13 Total: -37.63 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.68 Total: -24.42 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.12 -8.65 -43.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156048021.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.927 kcal (2) G-P(sol) polarization free energy of solvation -35.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds