Wall clock time and date at job start Tue Mar 31 2020 20:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36914 * 120.00474 * 2 1 4 4 H 1.07995 * 119.99846 * 127.13596 * 3 2 1 5 5 C 1.39020 * 119.99454 * 307.14050 * 3 2 1 6 6 N 1.31387 * 120.00223 * 47.42224 * 5 3 2 7 7 Si 1.86799 * 119.99613 * 227.41507 * 5 3 2 8 8 H 1.48500 * 109.47046 * 60.00638 * 7 5 3 9 9 H 1.48499 * 109.46896 * 180.02562 * 7 5 3 10 10 H 1.48488 * 109.47327 * 300.00346 * 7 5 3 11 11 C 1.34781 * 120.00083 * 180.02562 * 2 1 3 12 12 O 1.21627 * 120.00158 * 189.44892 * 11 2 1 13 13 C 1.47417 * 119.99601 * 9.44303 * 11 2 1 14 14 C 1.39863 * 120.08425 * 338.92754 * 13 11 2 15 15 C 1.36505 * 119.89392 * 180.02562 * 14 13 11 16 16 C 1.39316 * 120.39060 * 359.74592 * 15 14 13 17 17 C 1.39094 * 120.23021 * 0.40691 * 16 15 14 18 18 C 1.38022 * 119.59897 * 359.62870 * 17 16 15 19 19 C 1.50613 * 121.54045 * 179.97438 * 17 16 15 20 20 C 1.52870 * 110.44564 * 339.33327 * 19 17 16 21 21 C 1.53428 * 108.80357 * 51.15893 * 20 19 17 22 22 N 1.39339 * 119.05819 * 179.54796 * 16 15 14 23 23 S 1.65600 * 120.49995 * 347.08117 * 22 16 15 24 24 C 1.81401 * 104.44804 * 66.91026 * 23 22 16 25 25 O 1.42104 * 104.27604 * 310.84347 * 23 22 16 26 26 O 1.42097 * 104.28176 * 182.98200 * 23 22 16 27 27 H 1.09007 * 109.47023 * 247.21455 * 1 2 3 28 28 H 1.09008 * 109.46984 * 7.21035 * 1 2 3 29 29 H 1.08998 * 109.47755 * 127.21372 * 1 2 3 30 30 H 0.96993 * 119.99622 * 179.97438 * 6 5 3 31 31 H 1.07999 * 120.05303 * 0.06601 * 14 13 11 32 32 H 1.07995 * 119.81488 * 179.97438 * 15 14 13 33 33 H 1.08003 * 119.97113 * 180.16348 * 18 17 16 34 34 H 1.08991 * 109.30930 * 219.03215 * 19 17 16 35 35 H 1.08997 * 109.30592 * 99.62914 * 19 17 16 36 36 H 1.09004 * 109.57956 * 291.36151 * 20 19 17 37 37 H 1.08998 * 109.69314 * 171.02538 * 20 19 17 38 38 H 1.09000 * 109.79317 * 177.16724 * 21 20 19 39 39 H 1.09001 * 109.83903 * 56.35506 * 21 20 19 40 40 H 1.08998 * 109.47033 * 60.00513 * 24 23 22 41 41 H 1.08993 * 109.47108 * 300.00056 * 24 23 22 42 42 H 1.09002 * 109.47241 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1857 0.0000 4 1 2.9086 1.3709 0.7456 5 6 1.8676 2.1510 -0.9598 6 7 0.6214 2.4801 -1.2143 7 14 3.2608 2.9805 -1.8874 8 1 4.0416 1.9566 -2.6272 9 1 2.6992 3.9644 -2.8475 10 1 4.1488 3.6802 -0.9249 11 6 2.1389 -1.1672 -0.0005 12 8 3.3428 -1.1745 0.1724 13 6 1.4167 -2.4351 -0.2106 14 6 0.0401 -2.5054 0.0264 15 6 -0.6247 -3.6816 -0.1688 16 6 0.0591 -4.8130 -0.6084 17 6 1.4287 -4.7560 -0.8443 18 6 2.1055 -3.5693 -0.6477 19 6 2.1972 -5.9611 -1.3192 20 6 1.4291 -7.2439 -1.0005 21 6 -0.0068 -7.1031 -1.5224 22 7 -0.6452 -6.0016 -0.7894 23 16 -2.1817 -6.1671 -0.1944 24 6 -3.1732 -5.0042 -1.1718 25 8 -2.0845 -5.7287 1.1539 26 8 -2.5355 -7.5077 -0.5052 27 1 -0.3633 -0.3980 0.9475 28 1 -0.3633 1.0196 -0.1290 29 1 -0.3634 -0.6215 -0.8184 30 1 0.4247 3.1539 -1.8837 31 1 -0.4962 -1.6304 0.3627 32 1 -1.6875 -3.7345 0.0149 33 1 3.1685 -3.5176 -0.8316 34 1 3.1669 -5.9889 -0.8225 35 1 2.3491 -5.8902 -2.3962 36 1 1.4122 -7.4011 0.0780 37 1 1.9128 -8.0917 -1.4857 38 1 -0.5552 -8.0289 -1.3482 39 1 0.0076 -6.8779 -2.5887 40 1 -3.1141 -5.2734 -2.2263 41 1 -2.7896 -3.9935 -1.0327 42 1 -4.2117 -5.0467 -0.8433 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263675615.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:53 Heat of formation + Delta-G solvation = -22.248368 kcal Electronic energy + Delta-G solvation = -27913.677553 eV Core-core repulsion = 23988.148693 eV Total energy + Delta-G solvation = -3925.528860 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.40068 -38.57510 -37.57674 -36.29919 -35.98906 -34.83297 -33.89539 -32.22189 -30.43674 -30.23552 -29.33783 -26.82540 -25.47850 -24.79337 -23.22984 -22.76650 -20.57715 -19.61003 -18.94970 -18.07787 -17.14275 -17.12261 -16.64122 -16.29072 -15.50521 -15.24068 -14.97646 -14.51351 -14.34250 -14.21445 -14.02782 -13.92526 -13.75721 -13.47525 -13.29572 -13.05892 -12.92895 -12.51496 -12.42601 -12.41392 -12.25509 -11.90208 -11.82679 -11.54548 -11.43447 -11.30973 -11.17260 -11.02382 -10.74484 -10.64733 -10.37779 -10.27289 -9.77773 -8.67999 -8.60388 -8.45953 -7.80943 -7.45530 -6.72950 -3.99664 -0.15570 1.33450 1.59685 2.16371 3.18792 3.28006 3.35647 3.41745 3.62588 3.85224 4.08650 4.20093 4.42778 4.45051 4.53244 4.61508 4.70725 4.78255 4.82052 4.87985 5.00247 5.17787 5.29337 5.37901 5.48679 5.53041 5.58239 5.62402 5.71412 5.87887 5.96734 6.02574 6.18652 6.20585 6.34235 6.43537 6.60390 6.69007 6.83643 7.07682 7.18380 7.50930 8.37084 8.52999 9.11087 9.26998 9.98409 10.33390 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.019067 B = 0.003384 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.153632 B = 8273.099640 C = 9160.687720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.438 5.438 3 C -0.366 4.366 4 H 0.091 0.909 5 C 0.090 3.910 6 N -0.817 5.817 7 Si 0.877 3.123 8 H -0.270 1.270 9 H -0.287 1.287 10 H -0.269 1.269 11 C 0.503 3.497 12 O -0.573 6.573 13 C -0.126 4.126 14 C -0.097 4.097 15 C -0.196 4.196 16 C 0.184 3.816 17 C -0.125 4.125 18 C -0.038 4.038 19 C -0.073 4.073 20 C -0.130 4.130 21 C 0.107 3.893 22 N -0.935 5.935 23 S 2.602 3.398 24 C -0.680 4.680 25 O -0.937 6.937 26 O -0.954 6.954 27 H 0.037 0.963 28 H 0.117 0.883 29 H 0.045 0.955 30 H 0.274 0.726 31 H 0.176 0.824 32 H 0.120 0.880 33 H 0.135 0.865 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.105 0.895 39 H 0.077 0.923 40 H 0.133 0.867 41 H 0.143 0.857 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.277 -16.807 -4.116 19.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.157 5.157 3 C -0.491 4.491 4 H 0.109 0.891 5 C -0.122 4.122 6 N -0.448 5.448 7 Si 0.701 3.299 8 H -0.195 1.195 9 H -0.213 1.213 10 H -0.194 1.194 11 C 0.293 3.707 12 O -0.457 6.457 13 C -0.130 4.130 14 C -0.115 4.115 15 C -0.217 4.217 16 C 0.088 3.912 17 C -0.130 4.130 18 C -0.058 4.058 19 C -0.110 4.110 20 C -0.169 4.169 21 C -0.017 4.017 22 N -0.759 5.759 23 S 2.698 3.302 24 C -0.830 4.830 25 O -0.927 6.927 26 O -0.944 6.944 27 H 0.055 0.945 28 H 0.135 0.865 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.192 0.808 32 H 0.137 0.863 33 H 0.153 0.847 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.123 0.877 39 H 0.095 0.905 40 H 0.151 0.849 41 H 0.161 0.839 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.195 -17.307 -3.446 19.457 hybrid contribution 0.289 0.949 -1.107 1.486 sum -7.906 -16.359 -4.552 18.730 Atomic orbital electron populations 1.22838 0.83905 1.05914 0.96680 1.43164 1.04181 1.04572 1.63762 1.18812 1.20970 0.93760 1.15524 0.89117 1.25530 0.95752 0.95780 0.95132 1.70069 1.20049 1.26541 1.28120 0.86827 0.84253 0.78423 0.80351 1.19479 1.21339 1.19376 1.18156 0.86951 0.83268 0.82371 1.90607 1.14598 1.86867 1.53670 1.20295 0.93902 0.95503 1.03339 1.22670 0.94525 0.98852 0.95457 1.20672 0.99647 0.92924 1.08442 1.17313 0.91612 0.83956 0.98346 1.19284 0.91222 0.96099 1.06345 1.21058 1.00112 0.90069 0.94593 1.20339 0.98320 0.91000 1.01357 1.21824 0.94490 0.98169 1.02452 1.21806 0.94821 0.89021 0.96051 1.55608 1.31754 1.19817 1.68765 1.05235 0.73850 0.75527 0.75636 1.30790 1.16090 1.19324 1.16811 1.93680 1.84411 1.83283 1.31320 1.93586 1.82420 1.32784 1.85621 0.94517 0.86516 0.93635 0.91522 0.80756 0.86274 0.84741 0.90084 0.90569 0.90803 0.89824 0.87708 0.90498 0.84864 0.83918 0.84865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.03 8.14 59.84 0.49 1.51 16 2 N -0.44 -11.06 2.96 -131.02 -0.39 -11.45 16 3 C -0.37 -10.08 8.51 -14.99 -0.13 -10.21 16 4 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 5 C 0.09 2.34 5.36 -17.45 -0.09 2.25 16 6 N -0.82 -20.51 11.29 55.50 0.63 -19.89 16 7 Si 0.88 20.20 29.69 -169.99 -5.05 15.15 16 8 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 9 H -0.29 -6.35 7.11 56.52 0.40 -5.94 16 10 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 11 C 0.50 12.51 7.47 -12.52 -0.09 12.41 16 12 O -0.57 -16.08 16.52 5.25 0.09 -15.99 16 13 C -0.13 -2.52 5.77 -105.00 -0.61 -3.13 16 14 C -0.10 -1.66 7.85 -39.60 -0.31 -1.97 16 15 C -0.20 -2.87 7.94 -39.81 -0.32 -3.18 16 16 C 0.18 2.58 6.21 -83.73 -0.52 2.06 16 17 C -0.13 -1.82 5.76 -104.43 -0.60 -2.42 16 18 C -0.04 -0.67 9.20 -39.11 -0.36 -1.03 16 19 C -0.07 -0.78 5.78 -27.99 -0.16 -0.95 16 20 C -0.13 -1.17 6.12 -26.58 -0.16 -1.33 16 21 C 0.11 0.97 6.40 -3.60 -0.02 0.95 16 22 N -0.93 -10.61 3.16 -58.06 -0.18 -10.79 16 23 S 2.60 27.85 5.47 -107.50 -0.59 27.26 16 24 C -0.68 -4.86 10.41 101.05 1.05 -3.81 16 25 O -0.94 -13.50 16.46 -57.54 -0.95 -14.45 16 26 O -0.95 -11.62 16.26 -57.54 -0.94 -12.55 16 27 H 0.04 0.68 6.49 -51.92 -0.34 0.35 16 28 H 0.12 2.66 5.58 -51.92 -0.29 2.37 16 29 H 0.05 0.86 6.09 -51.93 -0.32 0.55 16 30 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 31 H 0.18 2.86 3.03 -62.39 -0.19 2.68 16 32 H 0.12 1.41 3.82 -52.49 -0.20 1.21 16 33 H 0.13 2.36 7.78 -52.48 -0.41 1.95 16 34 H 0.08 0.83 8.12 -51.93 -0.42 0.41 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.10 0.87 6.67 -51.93 -0.35 0.52 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.13 0.73 8.14 -51.92 -0.42 0.30 16 41 H 0.14 1.06 5.31 -51.93 -0.28 0.78 16 42 H 0.13 0.68 8.14 -51.92 -0.42 0.25 16 LS Contribution 342.16 15.07 5.16 5.16 Total: -1.00 -34.69 342.16 -8.93 -43.62 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -4.88 Total: 2.77 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: -1.84 Total: -8.84 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: 0.06 Total: -42.13 kcal Atomic # 8 Polarization: -41.19 SS G_CDS: -1.80 Total: -42.99 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.05 Total: 15.15 kcal Atomic # 16 Polarization: 27.85 SS G_CDS: -0.59 Total: 27.26 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.69 -8.93 -43.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263675615.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.376 kcal (2) G-P(sol) polarization free energy of solvation -34.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds