Wall clock time and date at job start Tue Mar 31 2020 20:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35901 * 116.99532 * 2 1 4 4 C 1.38737 * 120.05170 * 180.02562 * 3 2 1 5 5 C 1.38142 * 119.94357 * 180.02562 * 4 3 2 6 6 C 1.38265 * 120.05677 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.94607 * 179.70519 * 6 5 4 8 8 C 1.52998 * 109.47452 * 89.99823 * 7 6 5 9 9 C 1.50700 * 109.47072 * 180.02562 * 8 7 6 10 10 O 1.21283 * 120.00059 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00065 * 180.02562 * 9 8 7 12 12 N 1.40094 * 120.00547 * 180.02562 * 11 9 8 13 13 C 1.34774 * 120.00547 * 179.97438 * 12 11 9 14 14 O 1.21285 * 119.99678 * 359.97438 * 13 12 11 15 15 C 1.50700 * 120.00065 * 179.97438 * 13 12 11 16 16 S 1.81007 * 109.47040 * 179.97438 * 15 13 12 17 17 C 1.76193 * 99.99784 * 180.02562 * 16 15 13 18 18 H 1.07999 * 120.00367 * 0.02562 * 17 16 15 19 19 C 1.38801 * 119.99937 * 180.02562 * 17 16 15 20 20 N 1.31634 * 120.00566 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 119.99870 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47349 * 89.99951 * 21 19 17 23 23 H 1.48504 * 109.47227 * 210.00291 * 21 19 17 24 24 H 1.48506 * 109.47073 * 329.99825 * 21 19 17 25 25 C 1.38268 * 120.11063 * 359.97438 * 6 5 4 26 26 C 1.38149 * 120.05738 * 0.02562 * 25 6 5 27 27 H 1.09006 * 109.47060 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47369 * 299.99418 * 1 2 3 29 29 H 1.08993 * 109.47840 * 59.99890 * 1 2 3 30 30 H 1.08001 * 120.03029 * 0.02562 * 4 3 2 31 31 H 1.07997 * 119.97354 * 179.97438 * 5 4 3 32 32 H 1.09002 * 109.46668 * 209.99879 * 7 6 5 33 33 H 1.08997 * 109.47106 * 329.99123 * 7 6 5 34 34 H 1.09001 * 109.47089 * 300.00245 * 8 7 6 35 35 H 1.09005 * 109.46795 * 59.99925 * 8 7 6 36 36 H 0.97006 * 119.99992 * 0.02562 * 11 9 8 37 37 H 0.97006 * 119.99461 * 359.97438 * 12 11 9 38 38 H 1.08993 * 109.47255 * 300.00135 * 15 13 12 39 39 H 1.09005 * 109.47373 * 60.00096 * 15 13 12 40 40 H 0.96991 * 120.00203 * 180.02562 * 20 19 17 41 41 H 1.08005 * 119.97210 * 179.97438 * 25 6 5 42 42 H 1.07998 * 120.03203 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2109 0.0000 4 6 3.4312 1.2849 -0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3018 3.6758 0.0016 7 6 3.9859 5.0186 0.0089 8 6 4.2225 5.4783 -1.4311 9 6 4.9072 6.8208 -1.4237 10 8 5.1795 7.3569 -0.3704 11 7 5.2169 7.4258 -2.5875 12 7 5.8538 8.6735 -2.5807 13 6 6.1640 9.2782 -3.7446 14 8 5.8920 8.7419 -4.7979 15 6 6.8487 10.6207 -3.7372 16 16 7.1293 11.1642 -5.4408 17 6 7.9184 12.7110 -5.1422 18 1 8.0873 13.0445 -4.1290 19 6 8.3231 13.5010 -6.2094 20 7 8.9132 14.6564 -5.9865 21 14 8.0304 12.9246 -7.9619 22 1 6.7061 13.4088 -8.4276 23 1 9.0942 13.4661 -8.8454 24 1 8.0584 11.4404 -8.0061 25 6 1.9209 3.6048 0.0021 26 6 1.2913 2.3751 0.0016 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 4.0208 0.3800 -0.0014 31 1 5.1344 2.5751 0.0000 32 1 3.3560 5.7444 0.5232 33 1 4.9419 4.9365 0.5259 34 1 4.8524 4.7525 -1.9454 35 1 3.2663 5.5605 -1.9480 36 1 4.9987 6.9972 -3.4300 37 1 6.0717 9.1022 -1.7383 38 1 6.2192 11.3467 -3.2228 39 1 7.8049 10.5381 -3.2204 40 1 9.1956 15.2085 -6.7322 41 1 1.3340 4.5115 0.0038 42 1 0.2128 2.3201 0.0025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299162913.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:56 Heat of formation + Delta-G solvation = -61.120770 kcal Electronic energy + Delta-G solvation = -24445.813971 eV Core-core repulsion = 20518.599478 eV Total energy + Delta-G solvation = -3927.214494 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.67944 -40.33535 -38.99237 -38.10970 -35.37356 -33.98229 -32.48975 -31.97094 -31.51462 -29.90227 -28.64609 -27.65948 -25.67319 -24.67189 -23.08133 -21.66831 -21.46140 -20.59649 -18.61619 -18.18243 -17.87298 -17.31770 -16.81402 -16.20970 -16.12074 -16.00188 -15.44479 -15.19111 -15.05422 -14.74000 -14.55077 -14.28161 -14.04707 -13.94710 -13.59886 -13.34580 -13.31879 -12.84620 -12.56042 -12.48672 -12.42688 -11.82546 -11.55994 -11.38001 -11.33244 -11.27023 -11.14161 -11.05257 -10.76597 -10.39027 -9.95414 -9.82482 -9.43171 -9.05400 -8.59657 -8.52047 -8.42898 -6.99687 -6.33368 -4.06777 0.91032 0.95548 1.70048 2.19194 2.78464 2.80888 2.84775 3.28944 3.30107 3.44981 3.46505 3.90597 4.27191 4.31398 4.32878 4.43114 4.56702 4.58159 4.63881 4.64780 4.71100 4.83299 4.94626 4.96776 5.02357 5.05531 5.11848 5.20623 5.24499 5.44487 5.62489 5.63112 5.74461 5.85952 5.89924 5.92323 6.23615 6.33034 6.58508 6.61057 6.92962 7.43787 7.78701 7.89464 8.35101 8.37806 9.12068 10.75769 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.034750 B = 0.001480 C = 0.001447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.554002 B =18919.879406 C =19344.579230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.122 3.878 4 C -0.150 4.150 5 C -0.074 4.074 6 C -0.120 4.120 7 C -0.059 4.059 8 C -0.125 4.125 9 C 0.511 3.489 10 O -0.543 6.543 11 N -0.521 5.521 12 N -0.531 5.531 13 C 0.533 3.467 14 O -0.520 6.520 15 C -0.117 4.117 16 S -0.133 6.133 17 C -0.525 4.525 18 H 0.090 0.910 19 C 0.097 3.903 20 N -0.878 5.878 21 Si 0.856 3.144 22 H -0.267 1.267 23 H -0.273 1.273 24 H -0.235 1.235 25 C -0.074 4.074 26 C -0.206 4.206 27 H 0.100 0.900 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.431 0.569 37 H 0.431 0.569 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.272 0.728 41 H 0.126 0.874 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.961 -28.002 13.923 35.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.077 3.923 4 C -0.168 4.168 5 C -0.092 4.092 6 C -0.120 4.120 7 C -0.097 4.097 8 C -0.166 4.166 9 C 0.298 3.702 10 O -0.419 6.419 11 N -0.268 5.268 12 N -0.282 5.282 13 C 0.320 3.680 14 O -0.393 6.393 15 C -0.269 4.269 16 S 0.093 5.907 17 C -0.672 4.672 18 H 0.108 0.892 19 C -0.112 4.112 20 N -0.514 5.514 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.198 1.198 24 H -0.160 1.160 25 C -0.092 4.092 26 C -0.225 4.225 27 H 0.118 0.882 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.148 0.852 31 H 0.149 0.851 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.273 0.727 37 H 0.273 0.727 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.081 0.919 41 H 0.144 0.856 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -16.050 -28.530 12.846 35.165 hybrid contribution -0.011 0.808 0.378 0.892 sum -16.061 -27.722 13.224 34.660 Atomic orbital electron populations 1.23064 0.78292 1.04016 1.01428 1.86072 1.21475 1.27027 1.88720 1.19078 0.92447 0.84168 0.96618 1.20448 0.91365 0.98761 1.06261 1.20921 1.00018 0.90920 0.97387 1.19776 0.93535 0.95044 1.03677 1.20263 1.01764 0.92975 0.94703 1.21613 1.02165 0.92814 1.00048 1.20990 0.79347 0.87424 0.82487 1.90740 1.54449 1.66201 1.30493 1.44960 1.59125 1.12154 1.10604 1.45107 1.60726 1.11528 1.10845 1.20634 0.78449 0.86781 0.82176 1.90721 1.52911 1.65363 1.30268 1.23213 1.03413 0.94181 1.06058 1.84805 1.78538 1.25434 1.01915 1.22306 1.44558 1.02550 0.97804 0.89175 1.24698 0.93303 0.93884 0.99290 1.69932 1.38129 1.10745 1.32612 0.86748 0.79007 0.81986 0.84163 1.19165 1.19838 1.15953 1.20889 0.93992 0.97130 0.97218 1.21241 1.00069 0.92348 1.08847 0.88208 0.92609 0.92563 0.85166 0.85109 0.89991 0.89899 0.88081 0.88160 0.72679 0.72664 0.87765 0.87714 0.91850 0.85586 0.85477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 9.81 101.05 0.99 1.10 16 2 O -0.32 -2.47 10.50 -19.43 -0.20 -2.67 16 3 C 0.12 0.97 6.69 -39.22 -0.26 0.70 16 4 C -0.15 -1.12 9.99 -39.43 -0.39 -1.51 16 5 C -0.07 -0.51 9.69 -39.61 -0.38 -0.89 16 6 C -0.12 -0.83 5.14 -104.60 -0.54 -1.37 16 7 C -0.06 -0.41 4.63 -27.88 -0.13 -0.54 16 8 C -0.13 -0.81 5.68 -27.88 -0.16 -0.97 16 9 C 0.51 5.26 7.95 -10.99 -0.09 5.18 16 10 O -0.54 -7.34 15.82 5.56 0.09 -7.25 16 11 N -0.52 -5.87 6.26 31.22 0.20 -5.68 16 12 N -0.53 -7.10 6.26 31.22 0.20 -6.90 16 13 C 0.53 8.95 7.96 -10.99 -0.09 8.86 16 14 O -0.52 -10.26 15.70 5.55 0.09 -10.17 16 15 C -0.12 -2.14 6.16 36.01 0.22 -1.92 16 16 S -0.13 -3.23 18.55 -107.50 -1.99 -5.22 16 17 C -0.52 -14.73 10.04 30.94 0.31 -14.42 16 18 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 19 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 20 N -0.88 -26.07 13.97 55.49 0.78 -25.30 16 21 Si 0.86 21.25 27.74 -169.99 -4.71 16.54 16 22 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.24 -5.81 6.74 56.52 0.38 -5.42 16 25 C -0.07 -0.50 9.69 -39.60 -0.38 -0.88 16 26 C -0.21 -1.41 9.04 -39.43 -0.36 -1.77 16 27 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 16 28 H 0.06 0.18 7.66 -51.93 -0.40 -0.22 16 29 H 0.06 0.18 7.66 -51.93 -0.40 -0.21 16 30 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 31 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 32 H 0.08 0.62 8.04 -51.93 -0.42 0.20 16 33 H 0.08 0.62 8.04 -51.93 -0.42 0.21 16 34 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.43 4.37 8.00 -182.60 -1.46 2.91 16 37 H 0.43 5.22 8.00 -182.60 -1.46 3.76 16 38 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 39 H 0.10 1.77 8.14 -51.91 -0.42 1.35 16 40 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.13 0.66 8.06 -52.48 -0.42 0.23 16 42 H 0.13 0.63 6.30 -52.49 -0.33 0.30 16 LS Contribution 378.64 15.07 5.71 5.71 Total: -1.00 -35.50 378.64 -9.06 -44.56 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -7.84 Total: 2.14 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -1.35 Total: -5.75 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 1.17 Total: -37.87 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.03 Total: -20.09 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.71 Total: 16.54 kcal Atomic # 16 Polarization: -3.23 SS G_CDS: -1.99 Total: -5.22 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.50 -9.06 -44.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299162913.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.564 kcal (2) G-P(sol) polarization free energy of solvation -35.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds