Wall clock time and date at job start Tue Mar 31 2020 20:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34299 * 124.85433 * 2 1 4 4 O 1.21283 * 125.42308 * 0.02562 * 3 2 1 5 5 C 1.50770 * 109.15162 * 180.02562 * 3 2 1 6 6 N 1.46982 * 106.56026 * 359.97438 * 5 3 2 7 7 S 1.65608 * 127.02602 * 180.02562 * 6 5 3 8 8 O 1.42095 * 104.28158 * 331.56356 * 7 6 5 9 9 O 1.42103 * 104.27360 * 203.70687 * 7 6 5 10 10 C 1.81398 * 104.44794 * 87.64043 * 7 6 5 11 11 C 1.53004 * 109.47065 * 180.47722 * 10 7 6 12 12 C 1.50695 * 109.47124 * 179.97438 * 11 10 7 13 13 H 1.08002 * 120.00332 * 359.97438 * 12 11 10 14 14 C 1.37883 * 120.00101 * 180.02562 * 12 11 10 15 15 N 1.31522 * 119.99604 * 359.97438 * 14 12 11 16 16 Si 1.86789 * 120.00223 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47344 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47424 * 119.99750 * 16 14 12 19 19 H 1.48506 * 109.47269 * 239.99652 * 16 14 12 20 20 C 1.46229 * 124.85399 * 180.30402 * 2 1 3 21 21 H 1.08997 * 109.88261 * 60.44080 * 20 2 1 22 22 C 1.50697 * 109.62447 * 299.75033 * 20 2 1 23 23 C 1.38237 * 119.99710 * 127.30001 * 22 20 2 24 24 C 1.38241 * 119.99917 * 179.76630 * 23 22 20 25 25 C 1.38242 * 119.99629 * 0.51201 * 24 23 22 26 26 C 1.38237 * 119.99836 * 359.74008 * 25 24 23 27 27 C 1.38229 * 120.00287 * 0.02562 * 26 25 24 28 28 H 1.08994 * 109.47237 * 3.15888 * 1 2 3 29 29 H 1.08999 * 109.46871 * 123.16028 * 1 2 3 30 30 H 1.09002 * 109.46962 * 243.16175 * 1 2 3 31 31 H 1.09005 * 110.03705 * 240.72688 * 5 3 2 32 32 H 1.08999 * 110.08290 * 119.29577 * 5 3 2 33 33 H 1.08994 * 109.47555 * 60.47548 * 10 7 6 34 34 H 1.09000 * 109.47101 * 300.47107 * 10 7 6 35 35 H 1.09000 * 109.46659 * 299.99656 * 11 10 7 36 36 H 1.09004 * 109.47157 * 59.99468 * 11 10 7 37 37 H 0.97000 * 119.99470 * 180.02562 * 15 14 12 38 38 H 1.08000 * 120.00273 * 359.97438 * 23 22 20 39 39 H 1.07999 * 120.00030 * 180.23201 * 24 23 22 40 40 H 1.08000 * 119.99582 * 179.72396 * 25 24 23 41 41 H 1.08006 * 119.99321 * 179.97438 * 26 25 24 42 42 H 1.08000 * 119.99783 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2325 1.1021 0.0000 4 8 1.8233 2.2438 0.0004 5 6 3.6840 0.6940 -0.0006 6 7 3.7060 -0.7756 -0.0004 7 16 5.0429 -1.7530 -0.0003 8 8 6.0405 -0.9824 -0.6562 9 8 4.5816 -2.9778 -0.5538 10 6 5.4510 -1.9614 1.7549 11 6 6.6918 -2.8467 1.8883 12 6 7.0312 -3.0194 3.3464 13 1 6.4231 -2.5448 4.1023 14 6 8.1188 -3.7824 3.7154 15 7 8.8596 -4.3599 2.7948 16 14 8.5399 -3.9958 5.5226 17 1 7.5591 -3.2496 6.3510 18 1 8.4911 -5.4375 5.8754 19 1 9.9049 -3.4696 5.7783 20 6 2.3007 -1.2000 -0.0064 21 1 2.0976 -1.7884 -0.9011 22 6 2.0120 -2.0243 1.2216 23 6 1.6908 -3.3630 1.0956 24 6 1.4306 -4.1204 2.2224 25 6 1.4813 -3.5366 3.4744 26 6 1.7974 -2.1967 3.6000 27 6 2.0622 -1.4405 2.4736 28 1 -0.3633 1.0260 -0.0566 29 1 -0.3633 -0.5621 -0.8603 30 1 -0.3633 -0.4640 0.9170 31 1 4.1794 1.0748 0.8926 32 1 4.1795 1.0752 -0.8935 33 1 4.6127 -2.4308 2.2696 34 1 5.6508 -0.9866 2.1997 35 1 6.4920 -3.8216 1.4435 36 1 7.5301 -2.3774 1.3735 37 1 9.6244 -4.8970 3.0545 38 1 1.6464 -3.8179 0.1171 39 1 1.1833 -5.1671 2.1242 40 1 1.2736 -4.1273 4.3544 41 1 1.8365 -1.7406 4.5782 42 1 2.3088 -0.3936 2.5718 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330991521.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:19 Heat of formation + Delta-G solvation = -56.904701 kcal Electronic energy + Delta-G solvation = -28287.906656 eV Core-core repulsion = 24360.874984 eV Total energy + Delta-G solvation = -3927.031671 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.13212 -39.04425 -37.02360 -36.77867 -35.63248 -34.11899 -33.94649 -31.71135 -31.23809 -30.92731 -28.39886 -27.33681 -25.66424 -24.31650 -22.67250 -21.89527 -21.37525 -20.41885 -19.02664 -17.87131 -17.43847 -16.63662 -16.51027 -15.95983 -15.82642 -15.71217 -15.39061 -15.10788 -14.72965 -14.57436 -14.49732 -13.99336 -13.55502 -13.54689 -13.42081 -13.02895 -12.75095 -12.67035 -12.53623 -12.51826 -12.05986 -11.81683 -11.77316 -11.70211 -11.42412 -11.13144 -11.11335 -11.02677 -10.49516 -10.44846 -10.24469 -9.96019 -9.63696 -9.23012 -8.97201 -8.93875 -8.88214 -8.54310 -6.16409 -4.21677 0.45727 1.12542 1.35464 2.23537 2.47687 2.85413 3.22305 3.29971 3.32962 3.67175 4.08130 4.08963 4.20690 4.33642 4.40386 4.73083 4.87932 4.93835 5.03842 5.08524 5.14407 5.16968 5.19133 5.24499 5.30799 5.43227 5.44266 5.45224 5.52028 5.69736 5.80261 5.89983 5.95818 6.16651 6.37481 6.41252 6.46254 6.49793 6.75153 6.88956 7.23584 7.29242 7.76926 7.80468 8.12658 8.81590 9.43181 10.94706 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.012644 B = 0.004426 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.969805 B = 6324.825391 C = 7298.984357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.616 5.616 3 C 0.523 3.477 4 O -0.520 6.520 5 C 0.087 3.913 6 N -1.018 6.018 7 S 2.605 3.395 8 O -0.951 6.951 9 O -0.948 6.948 10 C -0.581 4.581 11 C 0.030 3.970 12 C -0.516 4.516 13 H 0.062 0.938 14 C 0.059 3.941 15 N -0.890 5.890 16 Si 0.899 3.101 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.426 3.574 21 H 0.102 0.898 22 C -0.149 4.149 23 C -0.082 4.082 24 C -0.120 4.120 25 C -0.101 4.101 26 C -0.122 4.122 27 C -0.085 4.085 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.108 0.892 32 H 0.115 0.885 33 H 0.123 0.877 34 H 0.120 0.880 35 H 0.034 0.966 36 H 0.033 0.967 37 H 0.265 0.735 38 H 0.130 0.870 39 H 0.127 0.873 40 H 0.124 0.876 41 H 0.124 0.876 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.435 4.807 -2.760 19.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.352 5.352 3 C 0.310 3.690 4 O -0.396 6.396 5 C -0.041 4.041 6 N -0.852 5.852 7 S 2.705 3.295 8 O -0.942 6.942 9 O -0.939 6.939 10 C -0.715 4.715 11 C -0.009 4.009 12 C -0.556 4.556 13 H 0.080 0.920 14 C -0.144 4.144 15 N -0.528 5.528 16 Si 0.726 3.274 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.208 1.208 20 C 0.234 3.766 21 H 0.119 0.881 22 C -0.152 4.152 23 C -0.101 4.101 24 C -0.138 4.138 25 C -0.119 4.119 26 C -0.140 4.140 27 C -0.104 4.104 28 H 0.105 0.895 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.126 0.874 32 H 0.133 0.867 33 H 0.142 0.858 34 H 0.139 0.861 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.074 0.926 38 H 0.148 0.852 39 H 0.144 0.856 40 H 0.142 0.858 41 H 0.142 0.858 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -18.116 4.961 -3.652 19.135 hybrid contribution 0.256 -0.155 1.727 1.753 sum -17.860 4.806 -1.925 18.595 Atomic orbital electron populations 1.21565 0.76240 1.03917 1.02287 1.48228 1.07093 1.06517 1.73336 1.20623 0.88564 0.84709 0.75113 1.90771 1.78696 1.19590 1.50494 1.21629 0.95843 0.80683 1.05956 1.59447 1.18489 1.16003 1.91297 1.05649 0.71444 0.72802 0.79609 1.93563 1.56590 1.70654 1.73379 1.93544 1.79588 1.43479 1.77245 1.30477 1.10997 1.10488 1.19553 1.18976 0.88222 0.93486 1.00207 1.20989 1.12307 1.31605 0.90693 0.91980 1.25052 0.96016 0.95358 0.97956 1.69964 1.17528 1.32457 1.32865 0.86431 0.78413 0.77999 0.84554 1.19649 1.20788 1.20774 1.19263 0.77226 0.84127 0.95967 0.88098 1.20358 1.04786 0.95086 0.94922 1.21091 0.96747 0.92662 0.99598 1.21172 1.00298 1.00002 0.92369 1.21277 0.97941 0.95017 0.97670 1.21154 0.99917 0.94425 0.98529 1.20908 0.97951 0.99801 0.91761 0.89493 0.91433 0.91521 0.87412 0.86729 0.85823 0.86125 0.94821 0.94844 0.92561 0.85162 0.85550 0.85820 0.85798 0.86364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.80 10.86 59.85 0.65 1.45 16 2 N -0.62 -6.57 2.76 -179.05 -0.49 -7.06 16 3 C 0.52 6.51 8.13 -11.16 -0.09 6.42 16 4 O -0.52 -7.86 17.43 5.55 0.10 -7.76 16 5 C 0.09 1.04 7.10 -4.90 -0.03 1.00 16 6 N -1.02 -13.67 3.31 -112.68 -0.37 -14.05 16 7 S 2.61 45.62 5.43 -107.50 -0.58 45.03 16 8 O -0.95 -19.10 17.71 -57.54 -1.02 -20.12 16 9 O -0.95 -18.25 17.64 -57.54 -1.01 -19.26 16 10 C -0.58 -10.88 6.12 37.16 0.23 -10.65 16 11 C 0.03 0.75 4.98 -27.88 -0.14 0.61 16 12 C -0.52 -13.87 9.11 -34.44 -0.31 -14.19 16 13 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 14 C 0.06 1.62 5.46 -17.81 -0.10 1.52 16 15 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 16 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 17 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 C 0.43 4.97 3.39 -128.77 -0.44 4.54 16 21 H 0.10 1.10 7.91 -51.93 -0.41 0.69 16 22 C -0.15 -1.75 4.32 -104.63 -0.45 -2.20 16 23 C -0.08 -0.94 9.67 -39.58 -0.38 -1.33 16 24 C -0.12 -1.32 10.05 -39.58 -0.40 -1.71 16 25 C -0.10 -1.09 10.05 -39.58 -0.40 -1.49 16 26 C -0.12 -1.36 10.05 -39.59 -0.40 -1.76 16 27 C -0.09 -0.99 8.73 -39.59 -0.35 -1.33 16 28 H 0.09 0.71 7.60 -51.93 -0.39 0.31 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 31 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.11 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.12 2.18 7.21 -51.93 -0.37 1.81 16 34 H 0.12 2.01 8.14 -51.92 -0.42 1.59 16 35 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 38 H 0.13 1.35 7.96 -52.49 -0.42 0.93 16 39 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 42 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 LS Contribution 372.33 15.07 5.61 5.61 Total: -1.00 -34.57 372.33 -10.46 -45.03 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -5.79 Total: 1.08 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: -2.61 Total: -19.11 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: -0.13 Total: -46.29 kcal Atomic # 8 Polarization: -45.20 SS G_CDS: -1.94 Total: -47.14 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: 45.62 SS G_CDS: -0.58 Total: 45.03 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.57 -10.46 -45.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330991521.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.876 kcal (2) G-P(sol) polarization free energy of solvation -34.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds