Wall clock time and date at job start Tue Mar 31 2020 20:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42100 * 110.54476 * 2 1 4 4 O 1.42101 * 110.54407 * 223.24561 * 2 1 3 5 5 C 1.76200 * 104.44600 * 111.62176 * 2 1 3 6 6 C 1.38300 * 119.96749 * 270.02086 * 5 2 1 7 7 C 1.38261 * 120.14544 * 180.02562 * 6 5 2 8 8 C 1.38136 * 120.06448 * 359.67579 * 7 6 5 9 9 C 1.38847 * 119.93042 * 0.57886 * 8 7 6 10 10 N 1.39952 * 120.06837 * 179.71920 * 9 8 7 11 11 C 1.34776 * 120.00194 * 324.43788 * 10 9 8 12 12 O 1.21581 * 119.99778 * 4.76995 * 11 10 9 13 13 N 1.34773 * 119.99958 * 184.76683 * 11 10 9 14 14 C 1.46499 * 120.00003 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47176 * 184.75863 * 14 13 11 16 16 C 1.50698 * 115.55074 * 304.08958 * 15 14 13 17 17 H 1.08002 * 119.99447 * 95.20030 * 16 15 14 18 18 C 1.37875 * 120.00151 * 274.91995 * 16 15 14 19 19 N 1.31518 * 119.99543 * 355.51730 * 18 16 15 20 20 Si 1.86803 * 120.00165 * 175.51382 * 18 16 15 21 21 H 1.48494 * 109.46871 * 60.00157 * 20 18 16 22 22 H 1.48499 * 109.46820 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46877 * 300.00174 * 20 18 16 24 24 C 1.53007 * 117.49405 * 89.75964 * 15 14 13 25 25 C 1.53002 * 117.49539 * 158.41663 * 15 14 13 26 26 C 1.38099 * 119.96461 * 89.99999 * 5 2 1 27 27 H 1.08997 * 109.47087 * 308.38306 * 1 2 3 28 28 H 1.09009 * 109.46724 * 68.37879 * 1 2 3 29 29 H 1.08997 * 109.47568 * 188.37238 * 1 2 3 30 30 H 1.08001 * 119.92537 * 359.97438 * 6 5 2 31 31 H 1.07993 * 119.96988 * 180.02562 * 7 6 5 32 32 H 1.08004 * 120.03673 * 180.29849 * 8 7 6 33 33 H 0.97000 * 119.99742 * 144.43657 * 10 9 8 34 34 H 0.96999 * 119.99702 * 359.97438 * 13 11 10 35 35 H 1.09003 * 109.46795 * 64.76084 * 14 13 11 36 36 H 1.08998 * 109.46853 * 304.76414 * 14 13 11 37 37 H 0.97004 * 119.99560 * 184.99926 * 19 18 16 38 38 H 1.09006 * 117.49199 * 215.00248 * 24 15 14 39 39 H 1.08994 * 117.50210 * 0.02562 * 24 15 14 40 40 H 1.08995 * 117.49839 * 359.97438 * 25 15 14 41 41 H 1.08997 * 117.49589 * 144.97713 * 25 15 14 42 42 H 1.07998 * 120.03706 * 0.02562 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9693 -0.9117 5 6 2.2535 -0.6287 1.5862 6 6 2.4255 0.2385 2.6497 7 6 2.7709 -0.2508 3.8959 8 6 2.9388 -1.6089 4.0838 9 6 2.7722 -2.4818 3.0169 10 7 2.9474 -3.8578 3.2028 11 6 3.8903 -4.3082 4.0540 12 8 4.5295 -3.5211 4.7249 13 7 4.1246 -5.6311 4.1614 14 6 5.1492 -6.1207 5.0870 15 6 5.2960 -7.6356 4.9303 16 6 4.0310 -8.4337 5.1141 17 1 3.4402 -8.7145 4.2548 18 6 3.6311 -8.8102 6.3787 19 7 4.3973 -8.5500 7.4154 20 14 2.0009 -9.6900 6.6196 21 1 2.0062 -10.9610 5.8517 22 1 1.8052 -9.9834 8.0621 23 1 0.8952 -8.8243 6.1364 24 6 6.3096 -8.1445 3.9033 25 6 6.6065 -8.2705 5.3998 26 6 2.4256 -1.9871 1.7663 27 1 -0.3633 0.6381 0.8055 28 1 -0.3633 0.3787 -0.9555 29 1 -0.3634 -1.0166 0.1496 30 1 2.2904 1.3004 2.5063 31 1 2.9040 0.4289 4.7244 32 1 3.2040 -1.9911 5.0586 33 1 2.3902 -4.4874 2.7190 34 1 3.6144 -6.2590 3.6263 35 1 4.8551 -5.8881 6.1105 36 1 6.1008 -5.6383 4.8638 37 1 4.1517 -8.8780 8.2946 38 1 6.0613 -9.0567 3.3607 39 1 6.8720 -7.4003 3.3397 40 1 7.3641 -7.6090 5.8198 41 1 6.5536 -9.2654 5.8419 42 1 2.2913 -2.6639 0.9355 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431106321.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:10 Heat of formation + Delta-G solvation = -39.691395 kcal Electronic energy + Delta-G solvation = -26298.120941 eV Core-core repulsion = 22371.835694 eV Total energy + Delta-G solvation = -3926.285246 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.49789 -38.71220 -37.35546 -36.83848 -36.18872 -34.63542 -33.52101 -32.05037 -31.42600 -29.91836 -29.66127 -26.32327 -25.25894 -23.62108 -22.66092 -21.24344 -20.72061 -19.60275 -19.11148 -18.30523 -17.96460 -16.60816 -16.51443 -16.20977 -16.12102 -15.71389 -15.32377 -14.77755 -14.71457 -14.50022 -14.09663 -13.90893 -13.72283 -13.57771 -13.25935 -13.14399 -12.75421 -12.42917 -12.33372 -12.27345 -12.07957 -11.83255 -11.67651 -11.43364 -11.06407 -11.04548 -11.00789 -10.62389 -10.42594 -10.27476 -9.88694 -9.56202 -9.36575 -9.12173 -8.62559 -8.50021 -8.28702 -8.02768 -6.15682 -4.26568 -0.23316 0.72392 1.11481 2.57381 2.86139 3.19155 3.19665 3.26275 3.26919 3.54887 3.75459 3.84161 4.26565 4.38961 4.50182 4.52870 4.71958 4.86115 5.07878 5.11947 5.23986 5.25922 5.28545 5.39303 5.54582 5.80595 5.94072 6.12236 6.22743 6.26508 6.34600 6.41286 6.47632 6.65601 6.73751 6.88316 7.05463 7.09568 7.21487 7.32084 7.49825 7.72232 8.25149 8.36584 8.74971 8.87910 9.41216 10.91281 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.018303 B = 0.002400 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.467363 B =11666.181015 C =11883.554241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 2.504 3.496 3 O -0.939 6.939 4 O -0.938 6.938 5 C -0.642 4.642 6 C -0.049 4.049 7 C -0.121 4.121 8 C -0.066 4.066 9 C 0.161 3.839 10 N -0.694 5.694 11 C 0.696 3.304 12 O -0.588 6.588 13 N -0.708 5.708 14 C 0.180 3.820 15 C 0.023 3.977 16 C -0.504 4.504 17 H 0.060 0.940 18 C 0.075 3.925 19 N -0.873 5.873 20 Si 0.891 3.109 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C -0.211 4.211 25 C -0.141 4.141 26 C -0.061 4.061 27 H 0.132 0.868 28 H 0.130 0.870 29 H 0.132 0.868 30 H 0.139 0.861 31 H 0.134 0.866 32 H 0.151 0.849 33 H 0.408 0.592 34 H 0.402 0.598 35 H 0.066 0.934 36 H 0.041 0.959 37 H 0.263 0.737 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.599 15.247 -11.360 21.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.684 3.316 3 O -0.937 6.937 4 O -0.935 6.935 5 C -0.730 4.730 6 C -0.069 4.069 7 C -0.140 4.140 8 C -0.087 4.087 9 C 0.064 3.936 10 N -0.342 5.342 11 C 0.397 3.603 12 O -0.467 6.467 13 N -0.360 5.360 14 C 0.057 3.943 15 C 0.022 3.978 16 C -0.542 4.542 17 H 0.078 0.922 18 C -0.130 4.130 19 N -0.508 5.508 20 Si 0.719 3.281 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.248 4.248 25 C -0.179 4.179 26 C -0.083 4.083 27 H 0.150 0.850 28 H 0.148 0.852 29 H 0.151 0.849 30 H 0.157 0.843 31 H 0.152 0.848 32 H 0.169 0.831 33 H 0.244 0.756 34 H 0.236 0.764 35 H 0.085 0.915 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.105 0.895 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.397 16.110 -11.113 21.296 hybrid contribution -1.765 -1.575 0.598 2.440 sum -10.162 14.535 -10.515 20.618 Atomic orbital electron populations 1.30230 1.25925 1.12149 1.11716 1.05035 0.77723 0.74572 0.74311 1.93581 1.77309 1.36612 1.86148 1.93593 1.77227 1.61594 1.61092 1.30217 1.19032 1.01921 1.21795 1.20854 0.95136 0.99169 0.91772 1.21218 1.00080 0.95219 0.97505 1.21808 0.94122 0.92992 0.99750 1.17564 0.99652 0.83267 0.93097 1.42707 1.38576 1.05080 1.47808 1.16030 0.80115 0.83812 0.80374 1.90869 1.52656 1.55108 1.48032 1.45191 1.41543 1.03734 1.45513 1.20904 0.87417 0.94237 0.91784 1.19025 0.90846 0.89761 0.98153 1.20286 1.06276 1.35254 0.92338 0.92232 1.24994 0.96809 0.95186 0.95991 1.69978 1.37297 1.43876 0.99666 0.86683 0.84197 0.80023 0.77204 1.20239 1.21247 1.20206 1.23057 1.06793 1.02276 0.92683 1.22464 0.99396 1.02069 0.94003 1.20596 0.98396 0.93702 0.95598 0.84960 0.85154 0.84921 0.84289 0.84807 0.83104 0.75613 0.76371 0.91533 0.94061 0.92728 0.90370 0.91659 0.91753 0.89461 0.83934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -2.37 10.79 101.05 1.09 -1.27 16 2 S 2.50 20.21 5.80 -107.50 -0.62 19.59 16 3 O -0.94 -10.41 17.12 -57.54 -0.99 -11.39 16 4 O -0.94 -10.81 17.12 -57.54 -0.99 -11.80 16 5 C -0.64 -6.39 5.65 -39.61 -0.22 -6.61 16 6 C -0.05 -0.49 9.47 -39.55 -0.37 -0.86 16 7 C -0.12 -1.33 10.04 -39.61 -0.40 -1.73 16 8 C -0.07 -0.91 8.69 -39.39 -0.34 -1.25 16 9 C 0.16 2.16 6.29 -83.68 -0.53 1.63 16 10 N -0.69 -9.55 5.34 -14.22 -0.08 -9.63 16 11 C 0.70 12.54 8.41 -86.92 -0.73 11.81 16 12 O -0.59 -12.43 13.80 5.29 0.07 -12.35 16 13 N -0.71 -13.11 5.42 -65.23 -0.35 -13.46 16 14 C 0.18 3.90 5.56 -4.04 -0.02 3.88 16 15 C 0.02 0.52 1.60 -155.66 -0.25 0.27 16 16 C -0.50 -12.37 8.14 -34.44 -0.28 -12.65 16 17 H 0.06 1.42 7.82 -52.49 -0.41 1.01 16 18 C 0.07 1.91 5.43 -17.82 -0.10 1.81 16 19 N -0.87 -23.41 12.65 55.43 0.70 -22.71 16 20 Si 0.89 19.77 29.54 -169.99 -5.02 14.75 16 21 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 22 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 24 C -0.21 -4.30 9.93 -26.69 -0.27 -4.56 16 25 C -0.14 -3.15 9.17 -26.69 -0.24 -3.40 16 26 C -0.06 -0.68 9.39 -39.39 -0.37 -1.05 16 27 H 0.13 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.13 0.29 8.14 -51.92 -0.42 -0.14 16 29 H 0.13 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.14 1.06 7.57 -52.49 -0.40 0.66 16 31 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.15 2.36 6.25 -52.48 -0.33 2.03 16 33 H 0.41 4.27 8.84 -40.82 -0.36 3.90 16 34 H 0.40 6.76 8.01 -40.82 -0.33 6.43 16 35 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 36 H 0.04 0.89 8.10 -51.93 -0.42 0.47 16 37 H 0.26 6.82 8.32 -40.82 -0.34 6.48 16 38 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 41 H 0.09 2.09 8.14 -51.93 -0.42 1.67 16 42 H 0.14 1.32 7.57 -52.49 -0.40 0.92 16 LS Contribution 372.37 15.07 5.61 5.61 Total: -1.00 -34.44 372.37 -10.28 -44.72 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -5.58 Total: 10.67 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -3.03 Total: -13.99 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: 0.27 Total: -45.80 kcal Atomic # 8 Polarization: -33.64 SS G_CDS: -1.90 Total: -35.54 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Atomic # 16 Polarization: 20.21 SS G_CDS: -0.62 Total: 19.59 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.44 -10.28 -44.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431106321.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.027 kcal (2) G-P(sol) polarization free energy of solvation -34.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds