Wall clock time and date at job start Tue Mar 31 2020 20:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99649 * 2 1 4 4 C 1.53000 * 109.47405 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46840 * 64.99638 * 4 3 2 6 6 C 1.46502 * 120.00345 * 275.00289 * 5 4 3 7 7 C 1.50697 * 109.47079 * 85.00200 * 6 5 4 8 8 H 1.08000 * 119.99936 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99754 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00085 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99983 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47496 * 89.99397 * 11 9 7 13 13 H 1.48492 * 109.47392 * 209.99768 * 11 9 7 14 14 H 1.48508 * 109.47109 * 329.99563 * 11 9 7 15 15 S 1.65605 * 119.99782 * 95.00317 * 5 4 3 16 16 O 1.42099 * 106.40321 * 203.53813 * 15 5 4 17 17 O 1.42097 * 106.40157 * 336.45932 * 15 5 4 18 18 N 1.65600 * 107.21849 * 90.00219 * 15 5 4 19 19 C 1.47429 * 125.64625 * 269.69322 * 18 15 5 20 20 C 1.55125 * 104.72515 * 155.81722 * 19 18 15 21 21 C 1.55152 * 101.48524 * 37.29321 * 20 19 18 22 22 H 1.09003 * 110.72291 * 82.69597 * 21 20 19 23 23 S 1.81401 * 110.87147 * 205.90082 * 21 20 19 24 24 C 1.81397 * 103.00027 * 288.60813 * 23 21 20 25 25 C 1.47021 * 125.65525 * 89.99808 * 18 15 5 26 26 H 1.08992 * 109.47069 * 60.00902 * 1 2 3 27 27 H 1.09008 * 109.46743 * 180.02562 * 1 2 3 28 28 H 1.08990 * 109.47463 * 299.99806 * 1 2 3 29 29 H 1.09002 * 109.47445 * 59.99875 * 3 2 1 30 30 H 1.09002 * 109.47167 * 299.99793 * 3 2 1 31 31 H 1.09002 * 109.47398 * 184.99964 * 4 3 2 32 32 H 1.09001 * 109.47194 * 305.00145 * 4 3 2 33 33 H 1.08998 * 109.47222 * 205.00373 * 6 5 4 34 34 H 1.09000 * 109.46517 * 324.99960 * 6 5 4 35 35 H 0.97003 * 120.00108 * 179.97438 * 10 9 7 36 36 H 1.09004 * 110.36193 * 274.74726 * 19 18 15 37 37 H 1.09003 * 110.36721 * 37.06139 * 19 18 15 38 38 H 1.09002 * 111.19161 * 279.18675 * 20 19 18 39 39 H 1.08997 * 110.93903 * 155.28615 * 20 19 18 40 40 H 1.09000 * 109.47303 * 180.02562 * 24 23 21 41 41 H 1.09004 * 109.47380 * 300.00316 * 24 23 21 42 42 H 1.09009 * 109.46985 * 60.00179 * 24 23 21 43 43 H 1.09007 * 109.87886 * 300.44436 * 25 18 15 44 44 H 1.08998 * 109.88071 * 61.60033 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5641 -1.2508 6 6 4.0015 -0.8954 -1.3757 7 6 2.6363 -1.3882 -1.7812 8 1 1.8306 -0.6846 -1.9304 9 6 2.4157 -2.7373 -1.9605 10 7 3.3967 -3.5940 -1.7783 11 14 0.7233 -3.3483 -2.4624 12 1 0.6309 -3.3891 -3.9439 13 1 0.5069 -4.7117 -1.9152 14 1 -0.3135 -2.4297 -1.9269 15 16 4.4473 1.5123 -2.5244 16 8 4.2786 0.7246 -3.6950 17 8 3.8194 2.7735 -2.3392 18 7 6.0750 1.7725 -2.3666 19 6 6.6995 2.8932 -1.6401 20 6 8.1101 2.3757 -1.2542 21 6 8.4870 1.5423 -2.5074 22 1 8.8828 2.1854 -3.2935 23 16 9.6789 0.2420 -2.0843 24 6 11.2043 1.1726 -1.7719 25 6 7.1368 0.9279 -2.9328 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5137 0.8899 29 1 1.6885 1.8464 0.8900 30 1 1.6885 1.8464 -0.8900 31 1 3.9783 2.1768 0.0902 32 1 3.8508 0.5687 0.8427 33 1 4.7312 -1.1828 -2.1327 34 1 4.2779 -1.3372 -0.4184 35 1 3.2414 -4.5432 -1.9041 36 1 6.7773 3.7676 -2.2863 37 1 6.1253 3.1319 -0.7449 38 1 8.0694 1.7471 -0.3646 39 1 8.8038 3.2044 -1.1129 40 1 12.0035 0.4812 -1.5046 41 1 11.4852 1.7221 -2.6704 42 1 11.0411 1.8737 -0.9533 43 1 7.0515 -0.0863 -2.5424 44 1 7.0610 0.9162 -4.0201 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451736739.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:11 Heat of formation + Delta-G solvation = -102.234007 kcal Electronic energy + Delta-G solvation = -27202.840299 eV Core-core repulsion = 23409.286953 eV Total energy + Delta-G solvation = -3793.553346 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.117 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -38.35343 -37.48052 -36.64055 -35.20870 -35.10168 -32.35548 -31.08006 -29.34626 -29.18064 -28.93185 -26.55822 -25.36134 -22.69707 -22.57747 -21.67696 -21.55809 -18.66474 -17.38070 -17.21019 -16.65145 -16.31176 -15.94700 -15.54235 -15.20229 -14.79152 -14.49631 -14.22962 -14.05773 -14.02161 -13.77592 -13.45299 -13.29780 -13.09003 -12.64185 -12.47062 -12.31014 -12.17251 -12.07076 -11.69267 -11.59484 -11.43931 -11.31682 -11.21682 -11.12823 -11.08825 -10.82733 -10.71589 -10.53081 -10.24404 -9.98757 -9.85847 -9.53105 -8.93042 -8.66405 -8.20577 -8.00057 -7.80632 -5.83049 -3.77987 1.05301 1.53082 2.38885 3.42890 3.46150 3.49305 3.51052 4.03593 4.20972 4.40254 4.50732 4.63010 4.81809 4.90750 4.93819 4.94156 5.15031 5.22790 5.35501 5.45255 5.48885 5.54259 5.55574 5.64969 5.70340 5.77827 5.80190 5.88638 5.92822 5.96016 6.01800 6.17405 6.33587 6.35926 6.42395 6.60546 7.35017 7.53506 7.71554 7.98107 8.17394 8.45213 9.21754 9.80806 11.27484 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014326 B = 0.004240 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.016187 B = 6602.406356 C = 7608.386721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.332 6.332 3 C 0.041 3.959 4 C 0.139 3.861 5 N -0.985 5.985 6 C 0.261 3.739 7 C -0.483 4.483 8 H 0.071 0.929 9 C 0.055 3.945 10 N -0.907 5.907 11 Si 0.889 3.111 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.273 1.273 15 S 2.789 3.211 16 O -0.955 6.955 17 O -0.992 6.992 18 N -1.023 6.023 19 C 0.126 3.874 20 C -0.124 4.124 21 C -0.070 4.070 22 H 0.099 0.901 23 S -0.232 6.232 24 C -0.126 4.126 25 C 0.146 3.854 26 H 0.030 0.970 27 H 0.080 0.920 28 H 0.025 0.975 29 H 0.042 0.958 30 H 0.045 0.955 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.032 0.968 34 H 0.034 0.966 35 H 0.258 0.742 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.100 0.900 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.199 13.675 4.070 18.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.249 6.249 3 C -0.038 4.038 4 C 0.012 3.988 5 N -0.827 5.827 6 C 0.140 3.860 7 C -0.523 4.523 8 H 0.089 0.911 9 C -0.144 4.144 10 N -0.548 5.548 11 Si 0.718 3.282 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.199 1.199 15 S 2.799 3.201 16 O -0.939 6.939 17 O -0.977 6.977 18 N -0.861 5.861 19 C -0.001 4.001 20 C -0.164 4.164 21 C -0.200 4.200 22 H 0.117 0.883 23 S -0.005 6.005 24 C -0.295 4.295 25 C 0.019 3.981 26 H 0.049 0.951 27 H 0.099 0.901 28 H 0.043 0.957 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.110 0.890 39 H 0.099 0.901 40 H 0.119 0.881 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.583 12.507 3.392 16.731 hybrid contribution -0.700 0.904 -0.025 1.144 sum 9.882 13.411 3.367 16.996 Atomic orbital electron populations 1.22638 0.83647 1.02165 0.98174 1.88549 1.17185 1.24570 1.94640 1.22908 0.94988 0.86690 0.99213 1.21047 0.92647 0.96938 0.88127 1.57817 1.77702 1.19530 1.27639 1.19068 0.98033 0.71178 0.97732 1.21490 0.95841 0.91950 1.42993 0.91146 1.24835 0.96549 0.96791 0.96240 1.69925 1.31347 1.02177 1.51356 0.86660 0.85199 0.77732 0.78582 1.21051 1.21655 1.19856 1.01821 0.71529 0.72690 0.74102 1.93633 1.84043 1.70291 1.45914 1.93530 1.73507 1.43482 1.87139 1.59524 1.23811 1.35375 1.67406 1.21924 0.93116 0.89092 0.95991 1.23228 0.96350 0.99537 0.97324 1.24262 0.97078 0.97867 1.00812 0.88294 1.87229 1.06622 1.15541 1.91125 1.23392 0.98007 1.03543 1.04530 1.21336 0.83371 0.94523 0.98857 0.95097 0.90134 0.95673 0.94028 0.93636 0.90763 0.89993 0.94979 0.94780 0.93233 0.91444 0.90554 0.89000 0.90127 0.88139 0.90651 0.90508 0.90119 0.90195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.90 101.05 1.10 1.65 16 2 O -0.33 -6.98 6.62 -35.23 -0.23 -7.21 16 3 C 0.04 0.74 6.22 37.16 0.23 0.97 16 4 C 0.14 2.40 5.81 -4.04 -0.02 2.37 16 5 N -0.98 -20.33 2.86 -115.66 -0.33 -20.66 16 6 C 0.26 6.58 5.04 -5.19 -0.03 6.56 16 7 C -0.48 -13.48 7.22 -34.44 -0.25 -13.73 16 8 H 0.07 1.98 6.09 -52.49 -0.32 1.66 16 9 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 10 N -0.91 -27.14 13.29 55.43 0.74 -26.40 16 11 Si 0.89 22.37 29.54 -169.99 -5.02 17.35 16 12 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 13 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 14 H -0.27 -6.54 7.05 56.52 0.40 -6.14 16 15 S 2.79 55.61 6.26 -107.50 -0.67 54.94 16 16 O -0.96 -23.08 16.69 -57.17 -0.95 -24.04 16 17 O -0.99 -20.10 16.69 -57.17 -0.95 -21.06 16 18 N -1.02 -15.71 3.75 -111.29 -0.42 -16.12 16 19 C 0.13 1.43 6.99 -2.41 -0.02 1.41 16 20 C -0.12 -1.15 6.55 -24.47 -0.16 -1.31 16 21 C -0.07 -0.76 3.44 -24.90 -0.09 -0.84 16 22 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 23 S -0.23 -2.65 21.65 -107.50 -2.33 -4.97 16 24 C -0.13 -0.91 10.75 101.05 1.09 0.17 16 25 C 0.15 2.11 6.60 -3.07 -0.02 2.09 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 1.48 8.08 -51.92 -0.42 1.06 16 28 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 1.03 7.61 -51.93 -0.40 0.64 16 32 H 0.08 1.34 8.00 -51.93 -0.42 0.93 16 33 H 0.03 0.87 7.61 -51.93 -0.40 0.47 16 34 H 0.03 0.89 8.00 -51.93 -0.42 0.48 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.09 0.91 8.05 -51.93 -0.42 0.50 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.10 0.65 8.14 -51.92 -0.42 0.23 16 41 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 42 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 43 H 0.08 1.32 7.78 -51.92 -0.40 0.91 16 44 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 380.80 15.07 5.74 5.74 Total: -1.00 -34.63 380.80 -10.09 -44.72 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -7.39 Total: -3.12 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: 1.74 Total: 0.84 kcal Atomic # 7 Polarization: -63.18 SS G_CDS: -0.01 Total: -63.19 kcal Atomic # 8 Polarization: -50.17 SS G_CDS: -2.14 Total: -52.31 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Atomic # 16 Polarization: 52.97 SS G_CDS: -3.00 Total: 49.97 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.63 -10.09 -44.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451736739.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.515 kcal (2) G-P(sol) polarization free energy of solvation -34.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds