Wall clock time and date at job start Tue Mar 31 2020 20:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42106 * 108.57785 * 2 1 4 4 O 1.42102 * 108.57679 * 228.97949 * 2 1 3 5 5 C 1.81399 * 101.92278 * 114.48949 * 2 1 3 6 6 C 1.53002 * 109.46886 * 197.25672 * 5 2 1 7 7 C 1.52994 * 115.55529 * 307.55503 * 6 5 2 8 8 C 1.50700 * 109.46956 * 280.57023 * 7 6 5 9 9 O 1.21270 * 120.00183 * 6.92573 * 8 7 6 10 10 N 1.34782 * 119.99918 * 186.92954 * 8 7 6 11 11 C 1.39470 * 119.99932 * 171.65675 * 10 8 7 12 12 C 1.38596 * 119.57950 * 23.64863 * 11 10 8 13 13 C 1.40808 * 118.79220 * 179.77689 * 12 11 10 14 14 C 1.41546 * 120.99587 * 180.23851 * 13 12 11 15 15 H 1.07998 * 120.00576 * 207.82370 * 14 13 12 16 16 C 1.40032 * 119.99686 * 27.82242 * 14 13 12 17 17 N 1.30743 * 120.00251 * 8.88742 * 16 14 13 18 18 Si 1.86805 * 119.99830 * 188.88817 * 16 14 13 19 19 H 1.48501 * 109.47029 * 94.99406 * 18 16 14 20 20 H 1.48499 * 109.47255 * 214.99194 * 18 16 14 21 21 H 1.48497 * 109.47120 * 334.99302 * 18 16 14 22 22 C 1.41168 * 118.01154 * 0.48267 * 13 12 11 23 23 C 1.37596 * 119.01374 * 359.75454 * 22 13 12 24 24 N 1.32079 * 121.10910 * 0.02562 * 23 22 13 25 25 C 1.53010 * 117.51737 * 93.25618 * 6 5 2 26 26 C 1.53000 * 117.49556 * 161.88118 * 6 5 2 27 27 H 1.09004 * 109.47327 * 305.50989 * 1 2 3 28 28 H 1.09005 * 109.47556 * 65.50839 * 1 2 3 29 29 H 1.09000 * 109.47132 * 185.51420 * 1 2 3 30 30 H 1.08997 * 109.47201 * 77.25746 * 5 2 1 31 31 H 1.09004 * 109.46700 * 317.25535 * 5 2 1 32 32 H 1.08997 * 109.47452 * 160.56481 * 7 6 5 33 33 H 1.09004 * 109.46929 * 40.56639 * 7 6 5 34 34 H 0.96997 * 119.99689 * 351.38327 * 10 8 7 35 35 H 1.07999 * 120.60006 * 359.97438 * 12 11 10 36 36 H 0.97000 * 120.00001 * 179.97438 * 17 16 14 37 37 H 1.07996 * 120.50080 * 179.77578 * 22 13 12 38 38 H 1.07995 * 119.44779 * 180.02562 * 23 22 13 39 39 H 1.08988 * 117.50020 * 214.97186 * 25 6 5 40 40 H 1.08998 * 117.49561 * 359.97438 * 25 6 5 41 41 H 1.09001 * 117.50071 * 359.97438 * 26 6 5 42 42 H 1.09001 * 117.49936 * 144.99622 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0163 5 6 2.1887 -0.7357 1.6152 6 6 3.6420 -0.4351 1.9876 7 6 4.6846 -0.8083 0.9320 8 6 4.9553 -2.2894 0.9950 9 8 4.2845 -2.9984 1.7147 10 7 5.9431 -2.8262 0.2515 11 6 6.3096 -4.1591 0.4365 12 6 5.3986 -5.0496 0.9823 13 6 5.7844 -6.3925 1.1573 14 6 4.8898 -7.3424 1.7057 15 1 5.2725 -8.1975 2.2429 16 6 3.5083 -7.1734 1.5516 17 7 3.0481 -6.2410 0.7590 18 14 2.3228 -8.2803 2.4785 19 1 1.9059 -7.6140 3.7385 20 1 1.1272 -8.5399 1.6369 21 1 2.9928 -9.5666 2.7969 22 6 7.0920 -6.7619 0.7744 23 6 7.9279 -5.8054 0.2456 24 7 7.5259 -4.5565 0.0935 25 6 3.9112 0.8082 2.8378 26 6 4.0399 -0.5847 3.4574 27 1 -0.3634 0.5969 0.8366 28 1 -0.3634 0.4260 -0.9352 29 1 -0.3633 -1.0229 0.0988 30 1 2.0420 -1.8146 1.5658 31 1 1.5253 -0.3129 2.3697 32 1 5.6078 -0.2616 1.1239 33 1 4.3082 -0.5496 -0.0578 34 1 6.3965 -2.2865 -0.4149 35 1 4.4098 -4.7203 1.2653 36 1 2.0911 -6.1241 0.6520 37 1 7.4312 -7.7802 0.8943 38 1 8.9295 -6.0804 -0.0502 39 1 4.8309 1.3603 2.6449 40 1 3.0529 1.4125 3.1315 41 1 3.2663 -0.8969 4.1590 42 1 5.0445 -0.9491 3.6722 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531670607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:55 Heat of formation + Delta-G solvation = -36.444687 kcal Electronic energy + Delta-G solvation = -27727.670183 eV Core-core repulsion = 23801.525725 eV Total energy + Delta-G solvation = -3926.144458 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.02655 -38.42141 -37.21507 -36.96654 -36.06879 -34.34648 -33.51313 -30.52767 -30.24937 -30.10533 -28.94873 -27.61470 -25.84428 -22.53805 -22.36163 -21.45784 -20.13646 -19.43426 -18.78313 -17.86835 -16.88813 -16.57071 -16.42068 -16.09962 -15.72942 -15.25449 -15.16147 -14.78438 -14.28493 -14.19307 -13.89027 -13.53794 -13.47655 -13.39940 -12.97462 -12.67740 -12.62424 -12.44194 -12.15513 -12.01401 -11.89483 -11.71812 -11.53149 -11.34285 -11.30675 -11.17390 -11.07660 -10.92222 -10.45715 -10.28550 -10.12940 -9.78876 -9.61993 -9.28795 -8.69512 -8.04438 -7.82623 -6.97803 -6.65845 -4.50599 -0.13769 2.58769 2.63180 2.89448 3.07212 3.11034 3.17467 3.34168 3.42063 3.51003 3.84382 3.93693 3.94249 4.31295 4.46836 4.56210 4.62696 4.72496 4.75149 4.85866 5.08828 5.26666 5.39766 5.41230 5.50774 5.60273 5.63579 5.74651 5.93253 5.94803 5.96980 6.10737 6.59658 6.82699 6.85520 7.10396 7.23535 7.45871 7.65851 7.94821 7.99894 8.39332 8.56358 8.82471 8.86547 8.97664 9.59626 10.22432 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.011430 B = 0.004174 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.069720 B = 6706.387718 C = 7911.128490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.661 4.661 2 S 2.409 3.591 3 O -0.937 6.937 4 O -0.931 6.931 5 C -0.568 4.568 6 C -0.101 4.101 7 C -0.122 4.122 8 C 0.511 3.489 9 O -0.493 6.493 10 N -0.651 5.651 11 C 0.312 3.688 12 C -0.211 4.211 13 C 0.131 3.869 14 C -0.453 4.453 15 H 0.080 0.920 16 C 0.075 3.925 17 N -0.780 5.780 18 Si 0.913 3.087 19 H -0.269 1.269 20 H -0.277 1.277 21 H -0.262 1.262 22 C -0.286 4.286 23 C 0.117 3.883 24 N -0.600 5.600 25 C -0.164 4.164 26 C -0.138 4.138 27 H 0.126 0.874 28 H 0.128 0.872 29 H 0.130 0.870 30 H 0.151 0.849 31 H 0.131 0.869 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.401 0.599 35 H 0.180 0.820 36 H 0.280 0.720 37 H 0.101 0.899 38 H 0.123 0.877 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.537 14.218 2.411 15.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.810 4.810 2 S 2.592 3.408 3 O -0.934 6.934 4 O -0.928 6.928 5 C -0.696 4.696 6 C -0.102 4.102 7 C -0.163 4.163 8 C 0.297 3.703 9 O -0.367 6.367 10 N -0.296 5.296 11 C 0.091 3.909 12 C -0.235 4.235 13 C 0.122 3.878 14 C -0.485 4.485 15 H 0.098 0.902 16 C -0.145 4.145 17 N -0.405 5.405 18 Si 0.737 3.263 19 H -0.194 1.194 20 H -0.202 1.202 21 H -0.186 1.186 22 C -0.310 4.310 23 C -0.038 4.038 24 N -0.320 5.320 25 C -0.201 4.201 26 C -0.176 4.176 27 H 0.145 0.855 28 H 0.146 0.854 29 H 0.149 0.851 30 H 0.169 0.831 31 H 0.149 0.851 32 H 0.126 0.874 33 H 0.113 0.887 34 H 0.235 0.765 35 H 0.196 0.804 36 H 0.092 0.908 37 H 0.119 0.881 38 H 0.141 0.859 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.135 14.793 1.827 16.119 hybrid contribution -1.486 -1.258 0.787 2.101 sum -7.621 13.535 2.614 15.751 Atomic orbital electron populations 1.30322 1.27480 1.11733 1.11492 1.08220 0.78168 0.76104 0.78321 1.93583 1.78835 1.34353 1.86668 1.93664 1.78453 1.66653 1.54054 1.29894 1.02711 1.15249 1.21794 1.20263 0.90873 1.04564 0.94549 1.21486 1.00497 0.94589 0.99689 1.20223 0.80365 0.89441 0.80313 1.90656 1.46143 1.60730 1.39149 1.43048 1.36641 1.11346 1.38563 1.18164 0.90469 0.83273 0.98967 1.23084 1.02639 0.91705 1.06103 1.17847 0.90837 0.91932 0.87147 1.19566 0.90370 1.07619 1.30927 0.90202 1.25946 0.99422 0.95374 0.93718 1.69756 1.15603 1.27492 1.27628 0.86231 0.79403 0.80722 0.79930 1.19372 1.20199 1.18558 1.21885 0.98030 0.99076 1.11993 1.21494 0.97686 0.87856 0.96788 1.66577 1.16335 1.19672 1.29393 1.23274 1.03917 0.90564 1.02305 1.22942 1.03437 0.98043 0.93164 0.85527 0.85368 0.85105 0.83065 0.85091 0.87447 0.88703 0.76495 0.80369 0.90845 0.88097 0.85919 0.87922 0.88135 0.88200 0.88197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -4.56 10.62 101.05 1.07 -3.49 16 2 S 2.41 26.30 4.46 -107.50 -0.48 25.82 16 3 O -0.94 -12.00 17.85 -57.83 -1.03 -13.04 16 4 O -0.93 -14.45 16.84 -57.83 -0.97 -15.42 16 5 C -0.57 -6.11 5.69 37.16 0.21 -5.90 16 6 C -0.10 -1.27 0.95 -154.51 -0.15 -1.41 16 7 C -0.12 -1.74 5.52 -27.89 -0.15 -1.89 16 8 C 0.51 9.86 7.57 -10.98 -0.08 9.78 16 9 O -0.49 -11.08 11.65 5.57 0.06 -11.02 16 10 N -0.65 -13.41 5.42 -11.49 -0.06 -13.47 16 11 C 0.31 7.86 7.49 -154.70 -1.16 6.70 16 12 C -0.21 -5.84 7.55 -38.48 -0.29 -6.13 16 13 C 0.13 3.64 5.59 -106.55 -0.60 3.04 16 14 C -0.45 -12.30 9.13 -37.65 -0.34 -12.65 16 15 H 0.08 2.06 7.86 -52.49 -0.41 1.64 16 16 C 0.07 1.92 5.32 -17.34 -0.09 1.83 16 17 N -0.78 -20.76 10.75 55.55 0.60 -20.16 16 18 Si 0.91 18.97 29.57 -169.99 -5.03 13.94 16 19 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 20 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 21 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 22 C -0.29 -7.19 9.90 -38.70 -0.38 -7.58 16 23 C 0.12 2.76 11.15 -17.68 -0.20 2.56 16 24 N -0.60 -14.75 10.36 -12.52 -0.13 -14.88 16 25 C -0.16 -1.62 9.86 -26.73 -0.26 -1.89 16 26 C -0.14 -1.64 9.29 -26.73 -0.25 -1.89 16 27 H 0.13 0.55 8.14 -51.92 -0.42 0.13 16 28 H 0.13 0.78 8.14 -51.92 -0.42 0.36 16 29 H 0.13 0.78 8.14 -51.92 -0.42 0.36 16 30 H 0.15 1.89 7.49 -51.93 -0.39 1.50 16 31 H 0.13 0.88 8.08 -51.92 -0.42 0.46 16 32 H 0.11 1.22 7.95 -51.93 -0.41 0.80 16 33 H 0.09 1.31 5.69 -51.93 -0.30 1.02 16 34 H 0.40 6.93 8.83 -40.82 -0.36 6.57 16 35 H 0.18 5.07 3.37 -52.65 -0.18 4.90 16 36 H 0.28 6.80 8.29 -40.82 -0.34 6.46 16 37 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 38 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 39 H 0.10 0.91 8.09 -51.94 -0.42 0.49 16 40 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 364.47 15.07 5.49 5.49 Total: -1.00 -36.70 364.47 -9.62 -46.32 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: -5.40 Total: 15.31 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: -2.67 Total: -18.91 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: 0.41 Total: -48.51 kcal Atomic # 8 Polarization: -37.53 SS G_CDS: -1.94 Total: -39.47 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Atomic # 16 Polarization: 26.30 SS G_CDS: -0.48 Total: 25.82 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.70 -9.62 -46.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531670607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.877 kcal (2) G-P(sol) polarization free energy of solvation -36.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds