Wall clock time and date at job start Tue Mar 31 2020 20:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42106 * 108.57785 * 2 1 4 4 O 1.42102 * 108.57679 * 228.97949 * 2 1 3 5 5 C 1.81399 * 101.92278 * 114.48949 * 2 1 3 6 6 C 1.53002 * 109.46886 * 197.25672 * 5 2 1 7 7 C 1.52994 * 115.55529 * 307.55503 * 6 5 2 8 8 C 1.50700 * 109.46956 * 280.57023 * 7 6 5 9 9 O 1.21270 * 120.00183 * 6.92573 * 8 7 6 10 10 N 1.34782 * 119.99918 * 186.92954 * 8 7 6 11 11 C 1.39470 * 119.99932 * 171.65675 * 10 8 7 12 12 C 1.38596 * 119.57950 * 23.64863 * 11 10 8 13 13 C 1.40808 * 118.79220 * 179.77689 * 12 11 10 14 14 C 1.41546 * 120.99587 * 180.23851 * 13 12 11 15 15 H 1.07998 * 120.00576 * 207.82370 * 14 13 12 16 16 C 1.40032 * 119.99686 * 27.82242 * 14 13 12 17 17 N 1.30743 * 120.00251 * 8.88742 * 16 14 13 18 18 Si 1.86805 * 119.99830 * 188.88817 * 16 14 13 19 19 H 1.48501 * 109.47029 * 94.99406 * 18 16 14 20 20 H 1.48499 * 109.47255 * 214.99194 * 18 16 14 21 21 H 1.48497 * 109.47120 * 334.99302 * 18 16 14 22 22 C 1.41168 * 118.01154 * 0.48267 * 13 12 11 23 23 C 1.37596 * 119.01374 * 359.75454 * 22 13 12 24 24 N 1.32079 * 121.10910 * 0.02562 * 23 22 13 25 25 C 1.53010 * 117.51737 * 93.25618 * 6 5 2 26 26 C 1.53000 * 117.49556 * 161.88118 * 6 5 2 27 27 H 1.09004 * 109.47327 * 305.50989 * 1 2 3 28 28 H 1.09005 * 109.47556 * 65.50839 * 1 2 3 29 29 H 1.09000 * 109.47132 * 185.51420 * 1 2 3 30 30 H 1.08997 * 109.47201 * 77.25746 * 5 2 1 31 31 H 1.09004 * 109.46700 * 317.25535 * 5 2 1 32 32 H 1.08997 * 109.47452 * 160.56481 * 7 6 5 33 33 H 1.09004 * 109.46929 * 40.56639 * 7 6 5 34 34 H 0.96997 * 119.99689 * 351.38327 * 10 8 7 35 35 H 1.07999 * 120.60006 * 359.97438 * 12 11 10 36 36 H 0.97000 * 120.00001 * 179.97438 * 17 16 14 37 37 H 1.07996 * 120.50080 * 179.77578 * 22 13 12 38 38 H 1.07995 * 119.44779 * 180.02562 * 23 22 13 39 39 H 1.08988 * 117.50020 * 214.97186 * 25 6 5 40 40 H 1.08998 * 117.49561 * 359.97438 * 25 6 5 41 41 H 1.09001 * 117.50071 * 359.97438 * 26 6 5 42 42 H 1.09001 * 117.49936 * 144.99622 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0163 5 6 2.1887 -0.7357 1.6152 6 6 3.6420 -0.4351 1.9876 7 6 4.6846 -0.8083 0.9320 8 6 4.9553 -2.2894 0.9950 9 8 4.2845 -2.9984 1.7147 10 7 5.9431 -2.8262 0.2515 11 6 6.3096 -4.1591 0.4365 12 6 5.3986 -5.0496 0.9823 13 6 5.7844 -6.3925 1.1573 14 6 4.8898 -7.3424 1.7057 15 1 5.2725 -8.1975 2.2429 16 6 3.5083 -7.1734 1.5516 17 7 3.0481 -6.2410 0.7590 18 14 2.3228 -8.2803 2.4785 19 1 1.9059 -7.6140 3.7385 20 1 1.1272 -8.5399 1.6369 21 1 2.9928 -9.5666 2.7969 22 6 7.0920 -6.7619 0.7744 23 6 7.9279 -5.8054 0.2456 24 7 7.5259 -4.5565 0.0935 25 6 3.9112 0.8082 2.8378 26 6 4.0399 -0.5847 3.4574 27 1 -0.3634 0.5969 0.8366 28 1 -0.3634 0.4260 -0.9352 29 1 -0.3633 -1.0229 0.0988 30 1 2.0420 -1.8146 1.5658 31 1 1.5253 -0.3129 2.3697 32 1 5.6078 -0.2616 1.1239 33 1 4.3082 -0.5496 -0.0578 34 1 6.3965 -2.2865 -0.4149 35 1 4.4098 -4.7203 1.2653 36 1 2.0911 -6.1241 0.6520 37 1 7.4312 -7.7802 0.8943 38 1 8.9295 -6.0804 -0.0502 39 1 4.8309 1.3603 2.6449 40 1 3.0529 1.4125 3.1315 41 1 3.2663 -0.8969 4.1590 42 1 5.0445 -0.9491 3.6722 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531670607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:54 Heat of formation + Delta-G solvation = -63.470943 kcal Electronic energy + Delta-G solvation = -27728.842129 eV Core-core repulsion = 23801.525725 eV Total energy + Delta-G solvation = -3927.316405 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.57616 -39.94936 -38.56331 -37.94577 -37.00640 -36.22082 -35.32423 -32.47249 -31.61628 -30.79114 -30.04811 -29.01033 -27.84252 -24.18521 -23.45106 -23.19908 -21.70875 -20.58237 -19.86972 -19.52948 -18.21732 -17.83980 -17.58549 -17.25781 -17.05193 -16.97932 -16.44515 -16.03014 -15.87121 -15.62575 -15.31172 -15.03608 -14.53052 -14.41061 -14.25119 -14.03293 -13.98043 -13.82001 -13.39013 -13.15605 -12.98138 -12.95460 -12.93109 -12.73843 -12.63059 -12.38047 -12.29929 -12.22104 -11.91380 -11.86310 -11.47378 -11.25385 -11.15230 -10.68528 -10.36633 -10.01371 -9.81733 -8.87714 -8.58357 -6.55704 -0.93213 0.73389 1.01846 1.35730 1.47638 1.51071 1.73660 1.86472 1.99110 2.18823 2.67079 2.79157 2.83008 3.11513 3.41100 3.56989 3.67692 3.72292 3.80518 4.01678 4.05896 4.17646 4.22364 4.36461 4.42069 4.45100 4.69024 4.76529 4.83490 4.91289 4.91450 4.93823 5.06724 5.09236 5.17917 5.26761 5.32159 5.54817 5.70042 6.01302 6.24453 6.49296 6.58591 6.83361 6.92290 7.28364 7.65256 8.31991 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.011430 B = 0.004174 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.069720 B = 6706.387718 C = 7911.128490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.642 4.642 2 S 2.408 3.592 3 O -0.960 6.960 4 O -0.991 6.991 5 C -0.568 4.568 6 C -0.130 4.130 7 C -0.117 4.117 8 C 0.505 3.495 9 O -0.526 6.526 10 N -0.651 5.651 11 C 0.311 3.689 12 C -0.250 4.250 13 C 0.099 3.901 14 C -0.487 4.487 15 H 0.083 0.917 16 C 0.031 3.969 17 N -0.812 5.812 18 Si 0.989 3.011 19 H -0.264 1.264 20 H -0.264 1.264 21 H -0.254 1.254 22 C -0.302 4.302 23 C 0.118 3.882 24 N -0.602 5.602 25 C -0.134 4.134 26 C -0.152 4.152 27 H 0.162 0.838 28 H 0.141 0.859 29 H 0.142 0.858 30 H 0.127 0.873 31 H 0.174 0.826 32 H 0.136 0.864 33 H 0.098 0.902 34 H 0.415 0.585 35 H 0.168 0.832 36 H 0.287 0.713 37 H 0.117 0.883 38 H 0.166 0.834 39 H 0.115 0.885 40 H 0.127 0.873 41 H 0.105 0.895 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.987 15.585 3.320 17.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.795 4.795 2 S 2.595 3.405 3 O -0.957 6.957 4 O -0.988 6.988 5 C -0.697 4.697 6 C -0.132 4.132 7 C -0.157 4.157 8 C 0.293 3.707 9 O -0.401 6.401 10 N -0.297 5.297 11 C 0.088 3.912 12 C -0.274 4.274 13 C 0.091 3.909 14 C -0.518 4.518 15 H 0.101 0.899 16 C -0.186 4.186 17 N -0.437 5.437 18 Si 0.809 3.191 19 H -0.188 1.188 20 H -0.189 1.189 21 H -0.177 1.177 22 C -0.326 4.326 23 C -0.037 4.037 24 N -0.323 5.323 25 C -0.170 4.170 26 C -0.190 4.190 27 H 0.181 0.819 28 H 0.159 0.841 29 H 0.161 0.839 30 H 0.146 0.854 31 H 0.192 0.808 32 H 0.154 0.846 33 H 0.116 0.884 34 H 0.252 0.748 35 H 0.185 0.815 36 H 0.098 0.902 37 H 0.135 0.865 38 H 0.183 0.817 39 H 0.133 0.867 40 H 0.145 0.855 41 H 0.123 0.877 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.519 16.192 2.710 18.057 hybrid contribution -1.028 -1.626 0.492 1.986 sum -8.547 14.566 3.202 17.189 Atomic orbital electron populations 1.30139 1.21866 1.13560 1.13889 1.07921 0.80253 0.74815 0.77502 1.93543 1.80668 1.34718 1.86797 1.93593 1.80970 1.67855 1.56406 1.29889 1.02842 1.13974 1.22982 1.20462 0.91294 1.07221 0.94201 1.21569 1.02734 0.90507 1.00859 1.21244 0.78984 0.91457 0.79012 1.90627 1.47000 1.62150 1.40319 1.43155 1.37250 1.09958 1.39356 1.18433 0.90263 0.84858 0.97664 1.23148 1.03137 0.92529 1.08629 1.18311 0.92340 0.92463 0.87835 1.19886 0.91657 1.08111 1.32133 0.89864 1.26909 1.00748 0.96802 0.94103 1.69848 1.16360 1.28939 1.28594 0.85091 0.76938 0.78615 0.78426 1.18833 1.18883 1.17707 1.22128 0.97569 1.00369 1.12506 1.22158 0.99105 0.87237 0.95189 1.66781 1.15851 1.20170 1.29481 1.23442 1.05410 0.89422 0.98737 1.22936 1.02704 1.00337 0.93009 0.81938 0.84096 0.83903 0.85442 0.80791 0.84600 0.88439 0.74795 0.81542 0.90230 0.86527 0.81742 0.86689 0.85482 0.87653 0.89987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -6.82 10.62 113.37 1.20 -5.61 16 2 S 2.41 50.27 4.46 -56.49 -0.25 50.02 16 3 O -0.96 -23.18 17.85 -127.37 -2.27 -25.46 16 4 O -0.99 -31.82 16.84 -127.37 -2.14 -33.97 16 5 C -0.57 -11.60 5.69 71.98 0.41 -11.19 16 6 C -0.13 -3.14 0.95 -52.18 -0.05 -3.19 16 7 C -0.12 -3.32 5.52 29.85 0.16 -3.15 16 8 C 0.51 20.19 7.57 87.66 0.66 20.85 16 9 O -0.53 -24.83 11.65 -3.00 -0.03 -24.87 16 10 N -0.65 -27.61 5.42 -308.66 -1.67 -29.29 16 11 C 0.31 16.10 7.49 132.75 0.99 17.10 16 12 C -0.25 -14.46 7.55 22.98 0.17 -14.28 16 13 C 0.10 5.71 5.59 -21.12 -0.12 5.59 16 14 C -0.49 -27.32 9.13 23.52 0.21 -27.10 16 15 H 0.08 4.41 7.86 -2.91 -0.02 4.39 16 16 C 0.03 1.61 5.32 85.29 0.45 2.06 16 17 N -0.81 -44.81 10.75 21.84 0.23 -44.57 16 18 Si 0.99 39.24 29.57 68.60 2.03 41.27 16 19 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 20 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 21 H -0.25 -9.63 7.11 99.48 0.71 -8.93 16 22 C -0.30 -15.46 9.90 22.84 0.23 -15.23 16 23 C 0.12 5.52 11.15 84.50 0.94 6.46 16 24 N -0.60 -29.80 10.36 -193.53 -2.01 -31.80 16 25 C -0.13 -2.28 9.86 30.60 0.30 -1.98 16 26 C -0.15 -3.50 9.29 30.59 0.28 -3.21 16 27 H 0.16 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.14 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.14 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.13 3.28 7.49 -2.39 -0.02 3.26 16 31 H 0.17 1.79 8.08 -2.39 -0.02 1.77 16 32 H 0.14 2.95 7.95 -2.39 -0.02 2.93 16 33 H 0.10 2.76 5.69 -2.38 -0.01 2.74 16 34 H 0.42 14.65 8.83 -92.71 -0.82 13.83 16 35 H 0.17 10.02 3.37 -5.51 -0.02 10.00 16 36 H 0.29 14.35 8.29 -92.71 -0.77 13.58 16 37 H 0.12 5.41 8.06 -2.91 -0.02 5.39 16 38 H 0.17 6.18 8.06 -2.91 -0.02 6.16 16 39 H 0.11 1.69 8.09 -2.39 -0.02 1.67 16 40 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -84.36 364.47 -0.02 -84.38 By element: Atomic # 1 Polarization: 46.95 SS G_CDS: 0.24 Total: 47.19 kcal Atomic # 6 Polarization: -38.76 SS G_CDS: 5.86 Total: -32.90 kcal Atomic # 7 Polarization: -102.22 SS G_CDS: -3.44 Total: -105.66 kcal Atomic # 8 Polarization: -79.84 SS G_CDS: -4.45 Total: -84.29 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 2.03 Total: 41.27 kcal Atomic # 16 Polarization: 50.27 SS G_CDS: -0.25 Total: 50.02 kcal Total: -84.36 -0.02 -84.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531670607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.905 kcal (2) G-P(sol) polarization free energy of solvation -84.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds