Wall clock time and date at job start Tue Mar 31 2020 20:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46508 * 120.00198 * 2 1 4 4 C 1.34777 * 120.00490 * 179.97438 * 2 1 3 5 5 O 1.21614 * 119.99567 * 0.02562 * 4 2 1 6 6 S 1.76195 * 120.00677 * 180.02562 * 4 2 1 7 7 C 1.76195 * 100.00161 * 175.15552 * 6 4 2 8 8 C 1.38916 * 120.07085 * 275.39458 * 7 6 4 9 9 C 1.38082 * 119.92664 * 179.69876 * 8 7 6 10 10 C 1.38315 * 120.07324 * 0.60231 * 9 8 7 11 11 C 1.38273 * 120.14327 * 359.67673 * 10 9 8 12 12 C 1.50694 * 119.96645 * 179.97438 * 11 10 9 13 13 N 1.46491 * 109.47138 * 270.02471 * 12 11 10 14 14 C 1.36934 * 120.00499 * 89.99984 * 13 12 11 15 15 H 1.08004 * 120.00145 * 11.57216 * 14 13 12 16 16 C 1.38809 * 120.00407 * 191.57779 * 14 13 12 17 17 N 1.31611 * 119.99999 * 22.58221 * 16 14 13 18 18 Si 1.86807 * 120.00107 * 202.58271 * 16 14 13 19 19 H 1.48501 * 109.47112 * 89.99823 * 18 16 14 20 20 H 1.48502 * 109.47069 * 209.99628 * 18 16 14 21 21 H 1.48503 * 109.47063 * 329.99974 * 18 16 14 22 22 C 1.46498 * 120.00192 * 269.99533 * 13 12 11 23 23 C 1.50699 * 109.47133 * 87.38601 * 22 13 12 24 24 O 1.20828 * 119.99717 * 0.02562 * 23 22 13 25 25 O 1.34228 * 120.00070 * 180.02562 * 23 22 13 26 26 C 1.38131 * 120.07051 * 0.02562 * 11 10 9 27 27 H 1.08996 * 109.46697 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47168 * 300.00016 * 1 2 3 29 29 H 1.09000 * 109.46954 * 60.00108 * 1 2 3 30 30 H 1.09000 * 109.46658 * 269.99958 * 3 2 1 31 31 H 1.09004 * 109.46800 * 29.99618 * 3 2 1 32 32 H 1.08998 * 109.47372 * 149.99522 * 3 2 1 33 33 H 1.08000 * 120.03760 * 359.97438 * 8 7 6 34 34 H 1.08001 * 119.96644 * 180.29894 * 9 8 7 35 35 H 1.07993 * 119.93215 * 179.69925 * 10 9 8 36 36 H 1.09008 * 109.46697 * 30.02132 * 12 11 10 37 37 H 1.08999 * 109.47467 * 150.01590 * 12 11 10 38 38 H 0.97006 * 120.00301 * 180.02562 * 17 16 14 39 39 H 1.08993 * 109.48069 * 207.39328 * 22 13 12 40 40 H 1.09000 * 109.47005 * 327.39396 * 22 13 12 41 41 H 0.96709 * 116.99843 * 180.02562 * 25 23 22 42 42 H 1.07992 * 120.03251 * 180.02562 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.1390 -1.1671 0.0005 5 8 1.5309 -2.2204 0.0005 6 16 3.9009 -1.1672 0.0012 7 6 4.2068 -2.8962 0.1482 8 6 4.2159 -3.4974 1.4005 9 6 4.4498 -4.8537 1.5118 10 6 4.6872 -5.6113 0.3792 11 6 4.6846 -5.0149 -0.8683 12 6 4.9443 -5.8440 -2.0995 13 7 6.3817 -5.8628 -2.3813 14 6 7.1736 -6.8383 -1.8368 15 1 6.7228 -7.6950 -1.3579 16 6 8.5557 -6.7261 -1.9001 17 7 9.1134 -5.5447 -2.0589 18 14 9.6241 -8.2521 -1.7598 19 1 9.8567 -8.8195 -3.1122 20 1 10.9261 -7.8898 -1.1443 21 1 8.9387 -9.2599 -0.9113 22 6 6.9722 -4.8381 -3.2458 23 6 7.3493 -3.6376 -2.4165 24 8 7.1461 -3.6383 -1.2254 25 8 7.9109 -2.5677 -3.0010 26 6 4.4452 -3.6597 -0.9870 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 2.3792 1.5833 -1.0277 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1385 0.5139 33 1 4.0358 -2.9055 2.2857 34 1 4.4522 -5.3227 2.4847 35 1 4.8747 -6.6710 0.4693 36 1 4.5934 -6.8625 -1.9323 37 1 4.4133 -5.4115 -2.9475 38 1 10.0792 -5.4663 -2.1035 39 1 7.8625 -5.2396 -3.7296 40 1 6.2483 -4.5421 -4.0051 41 1 8.1357 -1.8219 -2.4279 42 1 4.4429 -3.1946 -1.9616 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830569310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:31 Heat of formation + Delta-G solvation = -53.977146 kcal Electronic energy + Delta-G solvation = -27628.663287 eV Core-core repulsion = 23701.758564 eV Total energy + Delta-G solvation = -3926.904723 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.45600 -38.94260 -38.26673 -35.83743 -35.62233 -34.29026 -32.13507 -30.42360 -30.24047 -28.61128 -27.41453 -26.57520 -25.68060 -22.62092 -22.53964 -21.40557 -20.79102 -19.91184 -17.99196 -16.91254 -16.69671 -16.54259 -16.25099 -15.96250 -15.40499 -15.25815 -14.96652 -14.69795 -14.12217 -14.05992 -13.47086 -13.42769 -13.31891 -13.23610 -12.87229 -12.78580 -12.76637 -12.42982 -12.13185 -11.81164 -11.68307 -11.47437 -11.05186 -10.94430 -10.81071 -10.63115 -10.38018 -10.19967 -9.97902 -9.92602 -9.63498 -9.11911 -9.01221 -8.59983 -8.32990 -8.15151 -8.03986 -7.16061 -5.98083 -3.26927 0.97029 1.98158 2.05167 2.32484 2.49377 3.19220 3.33032 3.40021 3.41740 3.99299 4.25167 4.44220 4.58764 4.79589 5.02324 5.05862 5.23168 5.30134 5.35053 5.42448 5.45166 5.47402 5.57000 5.67767 5.92519 6.00618 6.04451 6.12355 6.32040 6.45914 6.48843 6.60115 6.81171 6.86382 6.93614 6.99527 7.05653 7.28616 7.53381 7.63343 7.72190 7.94659 8.10212 8.95683 9.49537 9.66869 10.05289 11.12462 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.019801 B = 0.003505 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.726221 B = 7987.109284 C = 8627.956557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.611 5.611 3 C 0.075 3.925 4 C 0.496 3.504 5 O -0.519 6.519 6 S -0.052 6.052 7 C -0.120 4.120 8 C -0.074 4.074 9 C -0.133 4.133 10 C -0.064 4.064 11 C -0.079 4.079 12 C 0.174 3.826 13 N -0.558 5.558 14 C -0.251 4.251 15 H 0.083 0.917 16 C 0.002 3.998 17 N -0.901 5.901 18 Si 0.912 3.088 19 H -0.286 1.286 20 H -0.293 1.293 21 H -0.279 1.279 22 C 0.186 3.814 23 C 0.472 3.528 24 O -0.501 6.501 25 O -0.546 6.546 26 C -0.025 4.025 27 H 0.086 0.914 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.114 0.886 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.258 0.742 39 H 0.116 0.884 40 H 0.050 0.950 41 H 0.378 0.622 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.628 11.555 1.835 17.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.348 5.348 3 C -0.068 4.068 4 C 0.178 3.822 5 O -0.398 6.398 6 S 0.182 5.818 7 C -0.232 4.232 8 C -0.096 4.096 9 C -0.153 4.153 10 C -0.083 4.083 11 C -0.084 4.084 12 C 0.048 3.952 13 N -0.276 5.276 14 C -0.380 4.380 15 H 0.100 0.900 16 C -0.196 4.196 17 N -0.546 5.546 18 Si 0.742 3.258 19 H -0.213 1.213 20 H -0.219 1.219 21 H -0.205 1.205 22 C 0.057 3.943 23 C 0.311 3.689 24 O -0.385 6.385 25 O -0.357 6.357 26 C -0.047 4.047 27 H 0.105 0.895 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.132 0.868 34 H 0.135 0.865 35 H 0.138 0.862 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.134 0.866 40 H 0.068 0.932 41 H 0.234 0.766 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -12.184 11.580 1.804 16.906 hybrid contribution 0.335 -0.853 0.988 1.348 sum -11.849 10.727 2.792 16.225 Atomic orbital electron populations 1.21716 0.78885 1.04358 1.01250 1.47743 1.06909 1.05726 1.74471 1.21852 0.97439 0.84839 1.02668 1.23132 0.94377 0.85462 0.79244 1.90865 1.67594 1.29871 1.51453 1.84794 0.99871 1.06917 1.90252 1.20993 1.11205 0.94389 0.96653 1.21045 0.98226 0.94925 0.95370 1.20953 1.02318 0.93571 0.98429 1.21080 0.95372 0.99826 0.92045 1.20892 0.95763 0.94228 0.97557 1.20124 0.85982 0.97403 0.91696 1.44430 1.02182 1.27649 1.53371 1.19338 0.87768 0.96942 1.33945 0.89969 1.24812 0.96918 0.96728 1.01190 1.69840 1.10285 1.20804 1.53646 0.86124 0.79678 0.82282 0.77718 1.21287 1.21938 1.20472 1.20446 0.99013 0.84671 0.90145 1.25186 0.72562 0.81943 0.89233 1.90572 1.51423 1.79826 1.16708 1.84628 1.76116 1.27939 1.46980 1.20914 0.94277 0.93218 0.96286 0.89487 0.92094 0.92070 0.91861 0.90462 0.90170 0.86760 0.86480 0.86224 0.91564 0.92890 0.93165 0.86589 0.93240 0.76624 0.87181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 10.69 59.85 0.64 1.40 16 2 N -0.61 -7.10 3.27 -193.51 -0.63 -7.73 16 3 C 0.08 0.61 10.26 59.85 0.61 1.22 16 4 C 0.50 7.74 7.91 54.06 0.43 8.17 16 5 O -0.52 -9.85 15.40 5.27 0.08 -9.77 16 6 S -0.05 -0.82 20.04 -107.50 -2.15 -2.98 16 7 C -0.12 -2.31 4.72 -39.10 -0.18 -2.50 16 8 C -0.07 -1.37 9.79 -39.39 -0.39 -1.76 16 9 C -0.13 -2.43 10.04 -39.61 -0.40 -2.83 16 10 C -0.06 -1.26 9.70 -39.54 -0.38 -1.65 16 11 C -0.08 -1.63 4.40 -104.65 -0.46 -2.09 16 12 C 0.17 3.48 5.83 -5.20 -0.03 3.45 16 13 N -0.56 -13.03 2.11 -176.00 -0.37 -13.41 16 14 C -0.25 -6.44 9.70 -15.06 -0.15 -6.59 16 15 H 0.08 2.06 7.91 -52.48 -0.41 1.64 16 16 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 17 N -0.90 -24.86 9.05 55.49 0.50 -24.36 16 18 Si 0.91 21.11 29.61 -169.99 -5.03 16.08 16 19 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 22 C 0.19 4.24 5.56 -5.19 -0.03 4.21 16 23 C 0.47 11.08 6.20 36.01 0.22 11.31 16 24 O -0.50 -13.08 13.74 -18.75 -0.26 -13.34 16 25 O -0.55 -11.20 13.42 -39.25 -0.53 -11.72 16 26 C -0.03 -0.51 7.20 -39.39 -0.28 -0.79 16 27 H 0.09 0.97 6.90 -51.93 -0.36 0.61 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.42 8.07 -51.93 -0.42 0.00 16 32 H 0.08 0.68 6.58 -51.93 -0.34 0.34 16 33 H 0.11 1.86 8.06 -52.49 -0.42 1.43 16 34 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 35 H 0.12 2.23 8.06 -52.49 -0.42 1.80 16 36 H 0.07 1.23 7.97 -51.92 -0.41 0.82 16 37 H 0.05 0.94 7.86 -51.93 -0.41 0.54 16 38 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 39 H 0.12 2.86 6.26 -51.93 -0.32 2.54 16 40 H 0.05 0.97 7.93 -51.93 -0.41 0.56 16 41 H 0.38 6.38 9.10 45.56 0.41 6.80 16 42 H 0.11 2.18 8.06 -52.49 -0.42 1.75 16 LS Contribution 368.43 15.07 5.55 5.55 Total: -1.00 -33.79 368.43 -8.10 -41.89 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -4.77 Total: 8.27 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: -0.48 Total: 11.51 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: -0.50 Total: -45.50 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -0.70 Total: -34.83 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Atomic # 16 Polarization: -0.82 SS G_CDS: -2.15 Total: -2.98 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.79 -8.10 -41.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830569310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.088 kcal (2) G-P(sol) polarization free energy of solvation -33.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds