Wall clock time and date at job start Tue Mar 31 2020 20:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46508 * 120.00198 * 2 1 4 4 C 1.34777 * 120.00490 * 179.97438 * 2 1 3 5 5 O 1.21614 * 119.99567 * 0.02562 * 4 2 1 6 6 S 1.76195 * 120.00677 * 180.02562 * 4 2 1 7 7 C 1.76195 * 100.00161 * 175.15552 * 6 4 2 8 8 C 1.38916 * 120.07085 * 275.39458 * 7 6 4 9 9 C 1.38082 * 119.92664 * 179.69876 * 8 7 6 10 10 C 1.38315 * 120.07324 * 0.60231 * 9 8 7 11 11 C 1.38273 * 120.14327 * 359.67673 * 10 9 8 12 12 C 1.50694 * 119.96645 * 179.97438 * 11 10 9 13 13 N 1.46491 * 109.47138 * 270.02471 * 12 11 10 14 14 C 1.36934 * 120.00499 * 89.99984 * 13 12 11 15 15 H 1.08004 * 120.00145 * 11.57216 * 14 13 12 16 16 C 1.38809 * 120.00407 * 191.57779 * 14 13 12 17 17 N 1.31611 * 119.99999 * 22.58221 * 16 14 13 18 18 Si 1.86807 * 120.00107 * 202.58271 * 16 14 13 19 19 H 1.48501 * 109.47112 * 89.99823 * 18 16 14 20 20 H 1.48502 * 109.47069 * 209.99628 * 18 16 14 21 21 H 1.48503 * 109.47063 * 329.99974 * 18 16 14 22 22 C 1.46498 * 120.00192 * 269.99533 * 13 12 11 23 23 C 1.50699 * 109.47133 * 87.38601 * 22 13 12 24 24 O 1.20828 * 119.99717 * 0.02562 * 23 22 13 25 25 O 1.34228 * 120.00070 * 180.02562 * 23 22 13 26 26 C 1.38131 * 120.07051 * 0.02562 * 11 10 9 27 27 H 1.08996 * 109.46697 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47168 * 300.00016 * 1 2 3 29 29 H 1.09000 * 109.46954 * 60.00108 * 1 2 3 30 30 H 1.09000 * 109.46658 * 269.99958 * 3 2 1 31 31 H 1.09004 * 109.46800 * 29.99618 * 3 2 1 32 32 H 1.08998 * 109.47372 * 149.99522 * 3 2 1 33 33 H 1.08000 * 120.03760 * 359.97438 * 8 7 6 34 34 H 1.08001 * 119.96644 * 180.29894 * 9 8 7 35 35 H 1.07993 * 119.93215 * 179.69925 * 10 9 8 36 36 H 1.09008 * 109.46697 * 30.02132 * 12 11 10 37 37 H 1.08999 * 109.47467 * 150.01590 * 12 11 10 38 38 H 0.97006 * 120.00301 * 180.02562 * 17 16 14 39 39 H 1.08993 * 109.48069 * 207.39328 * 22 13 12 40 40 H 1.09000 * 109.47005 * 327.39396 * 22 13 12 41 41 H 0.96709 * 116.99843 * 180.02562 * 25 23 22 42 42 H 1.07992 * 120.03251 * 180.02562 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.1390 -1.1671 0.0005 5 8 1.5309 -2.2204 0.0005 6 16 3.9009 -1.1672 0.0012 7 6 4.2068 -2.8962 0.1482 8 6 4.2159 -3.4974 1.4005 9 6 4.4498 -4.8537 1.5118 10 6 4.6872 -5.6113 0.3792 11 6 4.6846 -5.0149 -0.8683 12 6 4.9443 -5.8440 -2.0995 13 7 6.3817 -5.8628 -2.3813 14 6 7.1736 -6.8383 -1.8368 15 1 6.7228 -7.6950 -1.3579 16 6 8.5557 -6.7261 -1.9001 17 7 9.1134 -5.5447 -2.0589 18 14 9.6241 -8.2521 -1.7598 19 1 9.8567 -8.8195 -3.1122 20 1 10.9261 -7.8898 -1.1443 21 1 8.9387 -9.2599 -0.9113 22 6 6.9722 -4.8381 -3.2458 23 6 7.3493 -3.6376 -2.4165 24 8 7.1461 -3.6383 -1.2254 25 8 7.9109 -2.5677 -3.0010 26 6 4.4452 -3.6597 -0.9870 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 2.3792 1.5833 -1.0277 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1385 0.5139 33 1 4.0358 -2.9055 2.2857 34 1 4.4522 -5.3227 2.4847 35 1 4.8747 -6.6710 0.4693 36 1 4.5934 -6.8625 -1.9323 37 1 4.4133 -5.4115 -2.9475 38 1 10.0792 -5.4663 -2.1035 39 1 7.8625 -5.2396 -3.7296 40 1 6.2483 -4.5421 -4.0051 41 1 8.1357 -1.8219 -2.4279 42 1 4.4429 -3.1946 -1.9616 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830569310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:30 Heat of formation + Delta-G solvation = -74.980689 kcal Electronic energy + Delta-G solvation = -27629.574069 eV Core-core repulsion = 23701.758564 eV Total energy + Delta-G solvation = -3927.815505 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.64298 -40.54232 -39.85319 -37.45286 -36.76263 -36.09628 -33.88679 -31.95196 -31.85787 -29.34093 -29.19070 -27.47294 -27.40402 -24.38134 -23.93717 -22.60979 -22.27285 -21.62205 -19.09282 -18.76079 -18.36654 -17.79350 -17.57238 -17.14681 -16.94519 -16.90089 -16.51684 -16.18713 -15.88806 -15.26826 -15.21391 -15.02936 -14.61501 -14.45745 -14.27492 -13.75641 -13.50459 -13.45055 -13.41405 -13.30602 -13.20204 -13.02745 -12.81833 -12.60745 -12.45675 -12.23239 -12.04466 -11.93675 -11.73712 -11.72564 -10.98600 -10.87852 -10.50806 -9.98377 -9.71368 -9.57416 -9.37823 -9.00095 -7.94463 -5.23627 -0.29063 0.57566 0.59341 1.12149 1.19134 1.49720 1.51961 1.58925 2.17693 2.32374 2.48869 2.84020 2.90398 3.28911 3.71400 3.93439 4.03360 4.14883 4.18132 4.33037 4.43750 4.46178 4.52811 4.59544 4.64644 4.67990 4.84602 4.86699 4.92954 5.01132 5.13709 5.19729 5.29446 5.29512 5.35990 5.49160 5.64606 5.77547 5.89570 6.07883 6.20723 6.26109 6.63464 7.02950 7.66946 7.86489 8.15717 9.14193 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.019801 B = 0.003505 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.726221 B = 7987.109284 C = 8627.956557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.603 5.603 3 C 0.067 3.933 4 C 0.490 3.510 5 O -0.562 6.562 6 S -0.027 6.027 7 C -0.140 4.140 8 C -0.084 4.084 9 C -0.136 4.136 10 C -0.084 4.084 11 C -0.093 4.093 12 C 0.173 3.827 13 N -0.569 5.569 14 C -0.251 4.251 15 H 0.084 0.916 16 C -0.047 4.047 17 N -0.927 5.927 18 Si 0.969 3.031 19 H -0.282 1.282 20 H -0.307 1.307 21 H -0.273 1.273 22 C 0.185 3.815 23 C 0.475 3.525 24 O -0.530 6.530 25 O -0.540 6.540 26 C -0.039 4.039 27 H 0.062 0.938 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.111 0.889 32 H 0.075 0.925 33 H 0.134 0.866 34 H 0.145 0.855 35 H 0.124 0.876 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.248 0.752 39 H 0.095 0.905 40 H 0.081 0.919 41 H 0.396 0.604 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.886 13.025 2.168 19.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.338 5.338 3 C -0.075 4.075 4 C 0.171 3.829 5 O -0.445 6.445 6 S 0.206 5.794 7 C -0.251 4.251 8 C -0.105 4.105 9 C -0.156 4.156 10 C -0.103 4.103 11 C -0.098 4.098 12 C 0.047 3.953 13 N -0.287 5.287 14 C -0.380 4.380 15 H 0.102 0.898 16 C -0.242 4.242 17 N -0.573 5.573 18 Si 0.798 3.202 19 H -0.209 1.209 20 H -0.234 1.234 21 H -0.198 1.198 22 C 0.056 3.944 23 C 0.315 3.685 24 O -0.417 6.417 25 O -0.352 6.352 26 C -0.061 4.061 27 H 0.081 0.919 28 H 0.107 0.893 29 H 0.104 0.896 30 H 0.094 0.906 31 H 0.130 0.870 32 H 0.093 0.907 33 H 0.152 0.848 34 H 0.163 0.837 35 H 0.142 0.858 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.057 0.943 39 H 0.113 0.887 40 H 0.099 0.901 41 H 0.253 0.747 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -13.476 13.094 2.125 18.909 hybrid contribution 0.584 -1.115 0.895 1.545 sum -12.891 11.979 3.020 17.855 Atomic orbital electron populations 1.21930 0.77242 1.03607 1.03805 1.47958 1.08082 1.05635 1.72174 1.22152 0.97521 0.83845 1.03988 1.23158 0.94053 0.86149 0.79575 1.90847 1.68203 1.31539 1.53916 1.84499 1.00474 1.04002 1.90417 1.21360 1.10500 0.96592 0.96673 1.21397 0.97776 0.95379 0.95984 1.21307 1.01221 0.93723 0.99300 1.21298 0.96146 1.00381 0.92497 1.20950 0.96432 0.94573 0.97851 1.20256 0.84321 0.98193 0.92492 1.44484 1.03138 1.27635 1.53457 1.19588 0.88150 0.97573 1.32731 0.89842 1.25430 0.97999 0.98673 1.02125 1.69990 1.09510 1.22142 1.55698 0.85233 0.77528 0.79800 0.77598 1.20869 1.23415 1.19771 1.20435 0.99048 0.84401 0.90563 1.25253 0.71990 0.82452 0.88802 1.90556 1.52722 1.80566 1.17882 1.84560 1.75495 1.28090 1.47044 1.20955 0.95159 0.93389 0.96573 0.91896 0.89326 0.89621 0.90587 0.87011 0.90690 0.84787 0.83749 0.85784 0.90619 0.90939 0.94251 0.88710 0.90132 0.74663 0.87548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.24 10.69 127.77 1.37 2.61 16 2 N -0.60 -12.63 3.27 -884.40 -2.90 -15.53 16 3 C 0.07 0.86 10.26 127.77 1.31 2.17 16 4 C 0.49 14.78 7.91 129.79 1.03 15.81 16 5 O -0.56 -21.34 15.40 -4.07 -0.06 -21.40 16 6 S -0.03 -0.83 20.04 -56.49 -1.13 -1.96 16 7 C -0.14 -5.32 4.72 22.58 0.11 -5.21 16 8 C -0.08 -3.07 9.79 22.40 0.22 -2.85 16 9 C -0.14 -4.89 10.04 22.25 0.22 -4.67 16 10 C -0.08 -3.32 9.70 22.30 0.22 -3.10 16 11 C -0.09 -3.84 4.40 -19.88 -0.09 -3.92 16 12 C 0.17 6.83 5.83 85.63 0.50 7.33 16 13 N -0.57 -26.46 2.11 -710.73 -1.50 -27.96 16 14 C -0.25 -12.87 9.70 84.03 0.82 -12.05 16 15 H 0.08 4.16 7.91 -2.91 -0.02 4.14 16 16 C -0.05 -2.51 4.92 84.86 0.42 -2.10 16 17 N -0.93 -51.83 9.05 21.65 0.20 -51.63 16 18 Si 0.97 43.85 29.61 68.60 2.03 45.88 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.31 -14.46 7.11 99.48 0.71 -13.75 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 22 C 0.18 8.36 5.56 85.63 0.48 8.84 16 23 C 0.47 22.24 6.20 71.24 0.44 22.68 16 24 O -0.53 -27.81 13.74 21.96 0.30 -27.51 16 25 O -0.54 -21.77 13.42 -51.40 -0.69 -22.46 16 26 C -0.04 -1.59 7.20 22.40 0.16 -1.43 16 27 H 0.06 1.34 6.90 -2.39 -0.02 1.33 16 28 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.11 0.72 8.07 -2.38 -0.02 0.70 16 32 H 0.07 1.08 6.58 -2.39 -0.02 1.07 16 33 H 0.13 4.19 8.06 -2.91 -0.02 4.17 16 34 H 0.14 4.23 8.06 -2.91 -0.02 4.20 16 35 H 0.12 4.63 8.06 -2.91 -0.02 4.60 16 36 H 0.08 2.79 7.97 -2.38 -0.02 2.77 16 37 H 0.07 2.52 7.86 -2.39 -0.02 2.51 16 38 H 0.25 13.85 8.31 -92.70 -0.77 13.08 16 39 H 0.10 4.73 6.26 -2.39 -0.01 4.71 16 40 H 0.08 3.07 7.93 -2.39 -0.02 3.05 16 41 H 0.40 12.97 9.10 -74.05 -0.67 12.29 16 42 H 0.11 4.24 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -73.42 368.43 3.82 -69.60 By element: Atomic # 1 Polarization: 28.48 SS G_CDS: 0.38 Total: 28.86 kcal Atomic # 6 Polarization: 16.91 SS G_CDS: 7.19 Total: 24.10 kcal Atomic # 7 Polarization: -90.92 SS G_CDS: -4.20 Total: -95.12 kcal Atomic # 8 Polarization: -70.91 SS G_CDS: -0.45 Total: -71.37 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: -0.83 SS G_CDS: -1.13 Total: -1.96 kcal Total: -73.42 3.82 -69.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830569310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.376 kcal (2) G-P(sol) polarization free energy of solvation -73.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds