Wall clock time and date at job start Tue Mar 31 2020 20:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34226 * 116.99454 * 2 1 4 4 O 1.20830 * 120.00341 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99863 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.47075 * 179.97438 * 5 3 2 7 7 N 1.46504 * 109.46751 * 180.02562 * 6 5 3 8 8 C 1.37102 * 119.99602 * 269.99701 * 7 6 5 9 9 H 1.08000 * 119.99442 * 145.33197 * 8 7 6 10 10 C 1.38941 * 120.00313 * 325.32833 * 8 7 6 11 11 N 1.31414 * 119.99897 * 337.24116 * 10 8 7 12 12 Si 1.86803 * 120.00302 * 157.24339 * 10 8 7 13 13 H 1.48508 * 109.46693 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.47067 * 119.99557 * 12 10 8 15 15 H 1.48493 * 109.47315 * 240.00026 * 12 10 8 16 16 C 1.34775 * 119.99915 * 90.00051 * 7 6 5 17 17 O 1.21289 * 120.00418 * 4.88246 * 16 7 6 18 18 C 1.50705 * 119.99744 * 184.88389 * 16 7 6 19 19 C 1.52993 * 109.47165 * 177.73457 * 18 16 7 20 20 S 1.81401 * 109.47412 * 179.97438 * 19 18 16 21 21 C 1.76195 * 103.00140 * 180.02562 * 20 19 18 22 22 C 1.39207 * 119.70958 * 180.02562 * 21 20 19 23 23 C 1.38268 * 119.09202 * 179.97438 * 22 21 20 24 24 C 1.38913 * 118.51453 * 359.97438 * 23 22 21 25 25 C 1.38031 * 119.33838 * 0.27960 * 24 23 22 26 26 N 1.31962 * 120.86107 * 359.44561 * 25 24 23 27 27 H 1.09000 * 109.47095 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47272 * 300.00234 * 1 2 3 29 29 H 1.09001 * 109.47085 * 60.00809 * 1 2 3 30 30 H 1.08999 * 109.46989 * 59.99431 * 5 3 2 31 31 H 1.08999 * 109.46655 * 299.99776 * 5 3 2 32 32 H 1.08993 * 109.47093 * 60.00067 * 6 5 3 33 33 H 1.08996 * 109.46927 * 299.99340 * 6 5 3 34 34 H 0.97008 * 119.99726 * 184.95402 * 11 10 8 35 35 H 1.08993 * 109.47181 * 57.73482 * 18 16 7 36 36 H 1.09005 * 109.47015 * 297.73777 * 18 16 7 37 37 H 1.09010 * 109.47148 * 59.99798 * 19 18 16 38 38 H 1.08996 * 109.47447 * 300.00346 * 19 18 16 39 39 H 1.07993 * 120.45271 * 0.02562 * 22 21 20 40 40 H 1.07999 * 120.74693 * 180.02562 * 23 22 21 41 41 H 1.07999 * 120.33507 * 179.97438 * 24 23 22 42 42 H 1.08002 * 119.56732 * 179.72220 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0000 2.7423 -0.0002 7 7 5.4630 2.8190 -0.0002 8 6 6.1475 2.8555 1.1871 9 1 7.1102 2.3733 1.2704 10 6 5.6027 3.5130 2.2832 11 7 4.7001 4.4513 2.1046 12 14 6.1533 3.0634 4.0107 13 1 7.1719 1.9850 3.9405 14 1 6.7417 4.2573 4.6691 15 1 4.9846 2.5908 4.7955 16 6 6.1359 2.8536 -1.1675 17 8 5.5290 2.9108 -2.2160 18 6 7.6426 2.8213 -1.1698 19 6 8.1504 2.8141 -2.6130 20 16 9.9640 2.7760 -2.6158 21 6 10.3577 2.7726 -4.3333 22 6 11.6900 2.7452 -4.7356 23 6 11.9844 2.7423 -6.0865 24 6 10.9333 2.7664 -6.9944 25 6 9.6354 2.7983 -6.5256 26 7 9.3833 2.7951 -5.2303 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 3.9564 0.7806 -0.8891 31 1 3.9556 0.7811 0.8909 32 1 3.6099 3.2369 0.8893 33 1 3.6107 3.2357 -0.8907 34 1 4.3724 4.9597 2.8630 35 1 7.9876 1.9225 -0.6588 36 1 8.0257 3.7020 -0.6542 37 1 7.8054 3.7131 -3.1241 38 1 7.7673 1.9335 -3.1286 39 1 12.4828 2.7256 -4.0025 40 1 13.0087 2.7209 -6.4284 41 1 11.1296 2.7653 -8.0564 42 1 8.8154 2.8217 -7.2281 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871343048.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:14 Heat of formation + Delta-G solvation = -87.581641 kcal Electronic energy + Delta-G solvation = -25874.179350 eV Core-core repulsion = 21945.817427 eV Total energy + Delta-G solvation = -3928.361923 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.05659 -39.94957 -38.68370 -36.20552 -35.06962 -32.74341 -32.30358 -31.86940 -31.32962 -30.54919 -27.55234 -25.10171 -24.93242 -23.77810 -23.55024 -22.24056 -20.20554 -19.14606 -18.02560 -17.39203 -16.81345 -16.39408 -16.26791 -16.18682 -16.12582 -15.79870 -15.05669 -14.82709 -14.49107 -14.35302 -14.14386 -13.76191 -13.44594 -13.36001 -13.12980 -12.81627 -12.44966 -12.23224 -12.01029 -11.87774 -11.60965 -11.57362 -11.28248 -11.12093 -10.77217 -10.71686 -10.54639 -10.42970 -10.18421 -10.13517 -10.08979 -9.99990 -9.77935 -9.59565 -9.24983 -8.54287 -7.63849 -7.48266 -6.44630 -4.13501 0.90097 1.14516 1.57514 2.46312 2.66371 3.04019 3.06588 3.18860 3.21680 3.62441 3.79438 4.05898 4.46010 4.68273 4.70554 4.90096 4.95454 4.98396 5.13385 5.23644 5.29655 5.30551 5.43727 5.50894 5.56675 5.63352 5.79944 5.83318 5.88963 6.01285 6.04408 6.25782 6.30433 6.39743 6.46633 6.54964 6.72581 6.87877 7.28207 7.45866 7.72600 7.81277 8.17502 8.27747 8.98639 9.38989 9.82512 10.56787 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.011281 B = 0.002785 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.480967 B =10052.418789 C =12030.113841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.466 3.534 4 O -0.505 6.505 5 C -0.123 4.123 6 C 0.123 3.877 7 N -0.437 5.437 8 C -0.352 4.352 9 H 0.095 0.905 10 C 0.046 3.954 11 N -0.851 5.851 12 Si 0.912 3.088 13 H -0.265 1.265 14 H -0.280 1.280 15 H -0.279 1.279 16 C 0.477 3.523 17 O -0.600 6.600 18 C -0.108 4.108 19 C -0.066 4.066 20 S -0.086 6.086 21 C 0.128 3.872 22 C -0.156 4.156 23 C -0.061 4.061 24 C -0.189 4.189 25 C 0.116 3.884 26 N -0.486 5.486 27 H 0.095 0.905 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.119 0.881 33 H 0.067 0.933 34 H 0.272 0.728 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.812 -6.536 -8.822 13.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.309 3.691 4 O -0.391 6.391 5 C -0.162 4.162 6 C -0.002 4.002 7 N -0.155 5.155 8 C -0.480 4.480 9 H 0.113 0.887 10 C -0.161 4.161 11 N -0.486 5.486 12 Si 0.739 3.261 13 H -0.189 1.189 14 H -0.206 1.206 15 H -0.205 1.205 16 C 0.265 3.735 17 O -0.486 6.486 18 C -0.149 4.149 19 C -0.215 4.215 20 S 0.157 5.843 21 C -0.121 4.121 22 C -0.183 4.183 23 C -0.089 4.089 24 C -0.213 4.213 25 C -0.044 4.044 26 N -0.198 5.198 27 H 0.114 0.886 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.123 0.877 32 H 0.137 0.863 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.156 0.844 40 H 0.154 0.846 41 H 0.152 0.848 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 6.895 -6.103 -7.834 12.089 hybrid contribution 0.072 -0.099 -0.441 0.458 sum 6.967 -6.202 -8.275 12.469 Atomic orbital electron populations 1.23168 0.77369 1.03025 1.02343 1.86539 1.22749 1.34413 1.84673 1.24069 0.92393 0.80894 0.71762 1.90654 1.67259 1.36221 1.44997 1.21886 0.85847 1.03347 1.05143 1.21234 0.82144 0.91034 1.05749 1.43380 1.04471 1.62886 1.04736 1.19483 1.05442 1.35939 0.87105 0.88732 1.25382 0.96381 0.93984 1.00366 1.69866 1.29162 1.17448 1.32161 0.86105 0.78828 0.78948 0.82266 1.18948 1.20583 1.20457 1.20164 0.88783 0.80453 0.84132 1.90563 1.70229 1.55826 1.31966 1.21138 0.95144 1.04798 0.93850 1.23264 0.89592 1.07580 1.01058 1.85466 1.10588 1.90362 0.97901 1.23235 0.91982 0.97976 0.98901 1.21664 0.95886 1.03830 0.96921 1.21465 0.99763 0.95068 0.92557 1.22054 0.93910 1.04396 1.00916 1.22776 0.96208 0.93708 0.91736 1.68180 1.34876 1.14074 1.02710 0.88621 0.92162 0.92174 0.88607 0.87686 0.86310 0.91470 0.91700 0.89356 0.88512 0.88579 0.88820 0.84408 0.84590 0.84821 0.82569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.56 101.05 1.07 1.50 16 2 O -0.37 -6.03 10.57 -39.25 -0.41 -6.44 16 3 C 0.47 9.02 7.96 36.01 0.29 9.31 16 4 O -0.50 -11.08 15.73 -18.75 -0.30 -11.38 16 5 C -0.12 -2.45 6.14 -27.88 -0.17 -2.62 16 6 C 0.12 2.92 4.34 -4.04 -0.02 2.91 16 7 N -0.44 -10.52 2.54 -114.81 -0.29 -10.82 16 8 C -0.35 -8.42 8.73 -14.93 -0.13 -8.55 16 9 H 0.10 2.12 6.95 -52.49 -0.36 1.76 16 10 C 0.05 1.12 4.95 -17.47 -0.09 1.03 16 11 N -0.85 -22.14 11.34 55.50 0.63 -21.51 16 12 Si 0.91 18.69 29.61 -169.99 -5.03 13.65 16 13 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 14 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 15 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 16 C 0.48 11.14 7.63 -10.98 -0.08 11.06 16 17 O -0.60 -15.39 15.54 5.55 0.09 -15.30 16 18 C -0.11 -2.06 4.33 -27.88 -0.12 -2.18 16 19 C -0.07 -1.17 4.49 37.15 0.17 -1.01 16 20 S -0.09 -1.30 21.91 -107.50 -2.36 -3.65 16 21 C 0.13 1.84 7.00 -16.92 -0.12 1.72 16 22 C -0.16 -1.77 9.84 -39.21 -0.39 -2.16 16 23 C -0.06 -0.56 10.17 -39.32 -0.40 -0.96 16 24 C -0.19 -1.75 10.11 -39.41 -0.40 -2.15 16 25 C 0.12 1.36 11.17 -17.57 -0.20 1.16 16 26 N -0.49 -7.35 9.43 -12.10 -0.11 -7.47 16 27 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.06 0.75 8.13 -51.93 -0.42 0.32 16 29 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 30 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 31 H 0.10 1.97 8.14 -51.93 -0.42 1.54 16 32 H 0.12 3.09 5.32 -51.93 -0.28 2.82 16 33 H 0.07 1.73 7.32 -51.93 -0.38 1.35 16 34 H 0.27 6.71 8.32 -40.82 -0.34 6.37 16 35 H 0.09 1.56 7.68 -51.93 -0.40 1.16 16 36 H 0.10 1.85 8.09 -51.93 -0.42 1.43 16 37 H 0.10 1.86 8.08 -51.92 -0.42 1.44 16 38 H 0.09 1.74 8.12 -51.93 -0.42 1.32 16 39 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 40 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 41 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 42 H 0.16 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 378.18 15.07 5.70 5.70 Total: -1.00 -31.11 378.18 -8.30 -39.41 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -5.62 Total: 8.74 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: -0.59 Total: 9.07 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.22 Total: -39.80 kcal Atomic # 8 Polarization: -32.50 SS G_CDS: -0.62 Total: -33.12 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.65 kcal Atomic # 16 Polarization: -1.30 SS G_CDS: -2.36 Total: -3.65 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.11 -8.30 -39.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871343048.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.170 kcal (2) G-P(sol) polarization free energy of solvation -31.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds