Wall clock time and date at job start Tue Mar 31 2020 20:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34230 * 117.00202 * 2 1 4 4 O 1.20824 * 119.99531 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00239 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47019 * 179.97438 * 5 3 2 7 7 N 1.46502 * 109.46936 * 179.97438 * 6 5 3 8 8 C 1.36892 * 120.00368 * 269.99937 * 7 6 5 9 9 H 1.08001 * 119.99986 * 124.52773 * 8 7 6 10 10 C 1.39006 * 120.00402 * 304.53322 * 8 7 6 11 11 N 1.31394 * 120.00023 * 174.64295 * 10 8 7 12 12 Si 1.86802 * 119.99554 * 354.64290 * 10 8 7 13 13 H 1.48500 * 109.47176 * 94.98778 * 12 10 8 14 14 H 1.48507 * 109.46875 * 214.98427 * 12 10 8 15 15 H 1.48498 * 109.47504 * 334.98355 * 12 10 8 16 16 C 1.34776 * 119.99566 * 90.00725 * 7 6 5 17 17 O 1.21726 * 120.00346 * 2.88034 * 16 7 6 18 18 C 1.46568 * 120.00177 * 182.89128 * 16 7 6 19 19 C 1.36787 * 126.17342 * 351.73066 * 18 16 7 20 20 N 1.30939 * 113.91735 * 179.73628 * 19 18 16 21 21 C 1.29375 * 117.46638 * 0.51368 * 20 19 18 22 22 C 1.50706 * 124.70107 * 179.76956 * 21 20 19 23 23 C 1.53000 * 109.47387 * 89.69797 * 22 21 20 24 24 C 1.52997 * 117.49912 * 243.62214 * 23 22 21 25 25 C 1.52999 * 117.49750 * 174.99867 * 23 22 21 26 26 S 1.70925 * 110.59875 * 359.50325 * 21 20 19 27 27 H 1.08996 * 109.47567 * 59.99774 * 1 2 3 28 28 H 1.09005 * 109.47385 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46969 * 299.99411 * 1 2 3 30 30 H 1.08997 * 109.47095 * 60.00042 * 5 3 2 31 31 H 1.08999 * 109.46960 * 300.00111 * 5 3 2 32 32 H 1.09003 * 109.46811 * 60.00364 * 6 5 3 33 33 H 1.08999 * 109.47349 * 299.99878 * 6 5 3 34 34 H 0.97003 * 119.99569 * 179.97438 * 11 10 8 35 35 H 1.08003 * 123.04127 * 359.97438 * 19 18 16 36 36 H 1.09002 * 109.46712 * 209.70081 * 22 21 20 37 37 H 1.09005 * 109.46971 * 329.69381 * 22 21 20 38 38 H 1.08999 * 115.54681 * 29.32892 * 23 22 21 39 39 H 1.08996 * 117.49893 * 0.02562 * 24 23 22 40 40 H 1.09002 * 117.49891 * 145.01807 * 24 23 22 41 41 H 1.09000 * 117.49275 * 214.97902 * 25 23 22 42 42 H 1.08997 * 117.49869 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7420 -0.0011 7 7 5.4631 2.8187 -0.0011 8 6 6.1466 2.8550 1.1844 9 1 6.9150 2.1237 1.3873 10 6 5.8516 3.8329 2.1273 11 7 6.4317 3.8054 3.3059 12 14 4.6305 5.1861 1.7185 13 1 3.2838 4.8039 2.2140 14 1 5.0569 6.4509 2.3697 15 1 4.5800 5.3795 0.2470 16 6 6.1360 2.8537 -1.1683 17 8 5.5266 2.8745 -2.2218 18 6 7.6016 2.8664 -1.1692 19 6 8.4085 3.0048 -0.0733 20 7 9.6881 2.9773 -0.3494 21 6 10.0281 2.8372 -1.5898 22 6 11.4489 2.7897 -2.0899 23 6 11.9424 1.3415 -2.0875 24 6 13.1095 0.9944 -1.1611 25 6 13.3286 1.0665 -2.6737 26 16 8.6424 2.7061 -2.5820 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 3.9557 0.7809 -0.8908 31 1 3.9563 0.7805 0.8891 32 1 3.6107 3.2363 0.8890 33 1 3.6100 3.2360 -0.8911 34 1 6.2261 4.4881 3.9636 35 1 8.0248 3.1221 0.9294 36 1 11.4904 3.1860 -3.1045 37 1 12.0836 3.3909 -1.4388 38 1 11.1738 0.5828 -2.2352 39 1 13.5256 1.7977 -0.5532 40 1 13.1090 0.0071 -0.6991 41 1 13.4721 0.1266 -3.2067 42 1 13.8888 1.9172 -3.0615 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893168024.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:10 Heat of formation + Delta-G solvation = -38.978483 kcal Electronic energy + Delta-G solvation = -26598.055626 eV Core-core repulsion = 22671.801294 eV Total energy + Delta-G solvation = -3926.254332 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.30345 -39.54291 -38.54911 -37.34259 -36.39843 -35.25174 -32.66173 -31.74158 -30.78150 -28.37809 -27.41928 -25.39161 -24.20161 -23.58765 -22.43699 -20.93478 -20.78233 -20.37510 -18.98947 -18.13436 -17.38498 -16.80051 -16.55465 -16.38897 -16.07556 -15.37957 -14.87135 -14.78200 -14.32232 -14.16080 -14.11590 -13.84785 -13.44328 -13.12035 -12.98399 -12.75149 -12.61384 -12.41506 -12.29902 -12.01044 -11.74314 -11.58819 -11.52105 -11.31060 -11.06836 -10.79176 -10.70542 -10.46688 -10.32275 -10.18316 -10.10848 -10.02351 -9.63326 -9.08397 -8.86439 -8.80428 -8.19996 -7.86802 -6.65796 -4.53697 0.91221 1.76612 2.29288 2.43677 2.85158 3.02614 3.14509 3.23630 3.26866 3.72040 3.99106 4.05316 4.27978 4.40800 4.67815 4.74709 4.84936 4.99635 5.06626 5.12014 5.18463 5.30325 5.42665 5.44838 5.52223 5.55991 5.57919 5.67061 5.81303 5.85203 5.94324 5.94814 6.03726 6.16088 6.18891 6.27792 6.42752 6.56601 7.12887 7.25476 7.81397 7.92661 7.95425 8.33315 8.69209 9.00095 9.38307 10.38277 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.013427 B = 0.003282 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.871531 B = 8530.465762 C = 9615.167728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.468 3.532 4 O -0.510 6.510 5 C -0.123 4.123 6 C 0.119 3.881 7 N -0.455 5.455 8 C -0.364 4.364 9 H 0.115 0.885 10 C 0.078 3.922 11 N -0.850 5.850 12 Si 0.875 3.125 13 H -0.267 1.267 14 H -0.282 1.282 15 H -0.256 1.256 16 C 0.567 3.433 17 O -0.588 6.588 18 C -0.258 4.258 19 C 0.083 3.917 20 N -0.474 5.474 21 C 0.027 3.973 22 C -0.009 4.009 23 C -0.146 4.146 24 C -0.173 4.173 25 C -0.180 4.180 26 S 0.153 5.847 27 H 0.060 0.940 28 H 0.098 0.902 29 H 0.061 0.939 30 H 0.106 0.894 31 H 0.116 0.884 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.281 0.719 35 H 0.237 0.763 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.944 -6.000 -7.042 10.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.311 3.689 4 O -0.398 6.398 5 C -0.162 4.162 6 C -0.004 4.004 7 N -0.175 5.175 8 C -0.491 4.491 9 H 0.132 0.868 10 C -0.133 4.133 11 N -0.483 5.483 12 Si 0.701 3.299 13 H -0.193 1.193 14 H -0.208 1.208 15 H -0.180 1.180 16 C 0.356 3.644 17 O -0.473 6.473 18 C -0.381 4.381 19 C -0.071 4.071 20 N -0.189 5.189 21 C -0.249 4.249 22 C -0.050 4.050 23 C -0.165 4.165 24 C -0.210 4.210 25 C -0.217 4.217 26 S 0.409 5.591 27 H 0.079 0.921 28 H 0.116 0.884 29 H 0.080 0.920 30 H 0.125 0.875 31 H 0.134 0.866 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.252 0.748 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.124 0.876 39 H 0.115 0.885 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.696 -5.678 -8.055 10.525 hybrid contribution -1.270 0.799 1.054 1.834 sum 2.426 -4.879 -7.001 8.871 Atomic orbital electron populations 1.23208 0.76999 1.03288 1.02424 1.86533 1.22999 1.33953 1.84394 1.23969 0.92260 0.81053 0.71640 1.90650 1.67360 1.36334 1.45458 1.21799 0.86256 1.01672 1.06465 1.21412 0.82792 0.93120 1.03104 1.43293 1.03663 1.65183 1.05362 1.19121 1.21791 1.15576 0.92593 0.86800 1.25545 0.96207 0.96793 0.94738 1.69633 1.40258 1.34070 1.04344 0.86812 0.81128 0.81422 0.80535 1.19260 1.20824 1.18023 1.17065 0.84628 0.78617 0.84093 1.90712 1.69634 1.55500 1.31456 1.25841 0.99237 1.17465 0.95558 1.24837 0.84650 0.94163 1.03468 1.66331 1.19424 1.15606 1.17499 1.27196 1.00440 1.04443 0.92790 1.19764 0.88389 0.95616 1.01232 1.22204 0.91828 0.96944 1.05573 1.23024 1.02105 1.03177 0.92662 1.22995 0.99028 1.03134 0.96567 1.83634 0.97441 1.66421 1.11629 0.92075 0.88390 0.92041 0.87544 0.86595 0.90549 0.90007 0.90812 0.74820 0.89609 0.88932 0.87638 0.88472 0.88871 0.88807 0.88704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 101.05 1.07 1.46 16 2 O -0.36 -5.41 10.56 -39.26 -0.41 -5.83 16 3 C 0.47 8.17 7.96 36.01 0.29 8.46 16 4 O -0.51 -10.16 15.73 -18.75 -0.29 -10.45 16 5 C -0.12 -2.20 6.13 -27.88 -0.17 -2.37 16 6 C 0.12 2.55 3.32 -4.04 -0.01 2.54 16 7 N -0.45 -10.38 1.91 -116.33 -0.22 -10.60 16 8 C -0.36 -8.61 6.60 -15.01 -0.10 -8.71 16 9 H 0.12 2.80 6.28 -52.49 -0.33 2.47 16 10 C 0.08 1.91 5.41 -17.45 -0.09 1.82 16 11 N -0.85 -21.60 13.96 55.50 0.77 -20.83 16 12 Si 0.88 20.06 24.97 -169.99 -4.24 15.82 16 13 H -0.27 -6.06 7.00 56.52 0.40 -5.66 16 14 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 15 H -0.26 -6.11 6.97 56.52 0.39 -5.72 16 16 C 0.57 13.18 7.61 -12.90 -0.10 13.09 16 17 O -0.59 -14.54 16.54 5.17 0.09 -14.45 16 18 C -0.26 -5.50 6.43 -36.75 -0.24 -5.73 16 19 C 0.08 1.77 9.85 -18.46 -0.18 1.59 16 20 N -0.47 -9.23 10.50 -11.25 -0.12 -9.34 16 21 C 0.03 0.43 6.58 -13.31 -0.09 0.35 16 22 C -0.01 -0.11 6.07 -27.88 -0.17 -0.28 16 23 C -0.15 -1.62 5.72 -90.62 -0.52 -2.14 16 24 C -0.17 -1.75 10.18 -26.73 -0.27 -2.03 16 25 C -0.18 -1.58 10.25 -26.73 -0.27 -1.85 16 26 S 0.15 2.64 23.01 -107.50 -2.47 0.16 16 27 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 28 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 30 H 0.11 1.82 8.14 -51.93 -0.42 1.40 16 31 H 0.12 1.96 8.14 -51.93 -0.42 1.54 16 32 H 0.08 1.69 4.47 -51.93 -0.23 1.46 16 33 H 0.08 1.82 7.34 -51.93 -0.38 1.44 16 34 H 0.28 6.76 8.31 -40.82 -0.34 6.42 16 35 H 0.24 5.43 4.35 -52.48 -0.23 5.20 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.09 1.09 7.88 -51.93 -0.41 0.68 16 38 H 0.11 1.27 8.07 -51.93 -0.42 0.85 16 39 H 0.10 0.97 8.03 -51.93 -0.42 0.55 16 40 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 368.92 15.07 5.56 5.56 Total: -1.00 -29.19 368.92 -7.58 -36.77 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -5.37 Total: 7.01 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: -0.86 Total: 6.18 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: 0.43 Total: -40.77 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -0.62 Total: -30.73 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.24 Total: 15.82 kcal Atomic # 16 Polarization: 2.64 SS G_CDS: -2.47 Total: 0.16 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.19 -7.58 -36.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893168024.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.213 kcal (2) G-P(sol) polarization free energy of solvation -29.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds